Array 1 2135-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQMG01000001.1 Geobacillus proteiniphilus strain 1017 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2134 37 100.0 34 ..................................... ATACTGATCTCGCAAACGGACAAGCAGGTCAATA 2063 37 100.0 33 ..................................... ATGGTGGGGGAGCTCCCCCACACCCCCCGTCGC 1993 37 100.0 36 ..................................... GAGTGTATCGAAGTCATACGCGCTGGGGAGTTTTTG 1920 37 100.0 35 ..................................... CATGAATCGCTCGGCCATATATGGAAGATCGCACG 1848 37 100.0 36 ..................................... GCTTTGAGCAACTTTGTATCAACACGGCTGCTGTGA 1775 37 100.0 34 ..................................... CAAGTCTTCCGCATGCTGGATAAAGACCATCAAA 1704 37 100.0 34 ..................................... CAGAGGACATCATGTCGCGTCTTGAAAAGGACAT 1633 37 100.0 36 ..................................... ATAGCCGGCGCCGGAATTGGAATGAAGTGGCCGTGC 1560 37 100.0 34 ..................................... AACGTATGCGATCCCTAAGATTTGGGGCGAATTG 1489 37 100.0 34 ..................................... ACCGCACCAATATCCACACTTTCGATGATAGATA 1418 37 100.0 35 ..................................... AAAGTGGAAATGCCACTGATCGATAACATTATCGA 1346 37 100.0 36 ..................................... ACGAAGGCTTTTGACGCGTACGAGTACAACGCTTTA 1273 37 100.0 35 ..................................... AAAGAAACAGTTGGAAAGAAAGTGAAAGTACTAGG 1201 37 100.0 34 ..................................... TGAATATGGGGCCAATCGAAGGCGGCGACACACC 1130 37 100.0 34 ..................................... CGAATGGAATGAATGGTTTGAAAAAGGGATGGAG 1059 37 100.0 34 ..................................... TAGTTGGTGGGGTGCATGGGATGACACCGATCAG 988 37 100.0 35 ..................................... ATAAAGCAAAAACACACTATCCCCAGCACGGGTGA 916 37 100.0 37 ..................................... ACGATGTTCATCATTACGGCCGCCGTTGGTGAAAAAG 842 37 100.0 34 ..................................... CTCCCGTTTCCTCAAATTAAACTCGATGGTCGCT 771 37 100.0 34 ..................................... ACAAGTTTTTCTATCTTTGAGTTTGGTATCATTC 700 37 100.0 35 ..................................... ATCTTCGATAATCGTACAATTAAAATCTTTATCAA 628 37 100.0 36 ..................................... TTTGCTTTCACCGTCCGGTGCATCATCTATAAAAAC 555 37 100.0 34 ..................................... ACCGCACCAATATCCACACTTTCGATGATAGATA 484 37 100.0 34 ..................................... TCGTTCGTCATGTCCCATGCCTGTCACCTCGATT 413 37 100.0 34 ..................................... TTTTGTCTGTTCACTATTTCACCCCGCTTGTCCA 342 37 100.0 34 ..................................... ACAAGTTTTTCTATCTTTGAGTTTGGTATCATTC 271 37 100.0 34 ..................................... AAACAAGTCTTCCCAAACTTGCAGGAAAATTCTA 200 37 100.0 36 ..................................... AAAATGCGAACGTCCAAGCTGTTGTCGGCGCATATG 127 37 100.0 35 ..................................... GAAGCGAAGCGGATTAAAGCAATGATCGCCAGGCA 55 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ===================================== ================== 30 37 99.9 35 GTTGCACCCGGCTACCAAGCCGGGTGAGGATTGAAAC # Left flank : ACGATGTAGAAACATTAGAACCAAGCGGTCAAAAACGGTTGCGGAAAGTGGCGACCATTTGCCAAAATTTTGGACAGCGGGTGCAAAAATCAGTGTTCGAATGTAGCGTCAGTCAAGCGCAGCTGGAAGAAATGGAGCATCAATTGTTGCGTGTCATTGACTTGGAAAAAGATAGTTTGCGGATATATACATTGTACGGCAGCCGGTCAAAGGCGGTTCGTGTCTATGGAAAAGATTATTACGTTGATTATAATGATCCCATCATTTTGTGATGACAAAGATGACAAAATGCCGATGATATGTGCGGCAAGAAGAGAATGATACGCGAACATAAAGCGATGCTGAAAAATAGGGGGGATCGCGATGAGCGGAAAAGCTGGTTATAAAGCCGAAGATGGAAAATGGATCAGTGATCATTGTAACTTTGATCCAAGCGGAATGTGTAAGTTCGCGTTTTTATGTCTTGAAATCTGCTCAACACAAGATATCTAAACGCGGGC # Right flank : TCAAAATGCGAACGTCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTACCAAGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.40,-15.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 1190-2555 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQMG01000035.1 Geobacillus proteiniphilus strain 1017 contig00035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1190 30 100.0 38 .............................. GCTTTTTCCAATTCATCTGCAAGCTGGTTGTATTCTGC 1258 30 100.0 38 .............................. ACGTCCCGGATCTGCGTTTTCCATACATACTCGATCAC 1326 30 100.0 36 .............................. AAGAGATATTTTCGAAGCGTTTCCTTTGTGGTTGGC 1392 30 100.0 38 .............................. CAATGCGGGAATTGTGGTGGACATAAAATGCAGGGGTC 1460 30 100.0 38 .............................. ACCTCTTTCGCAACGATGTTGTTCACATCATCTTGCGT 1528 30 100.0 36 .............................. ATCCACTTTTCCGCGTCTACACGGCACAAGAGGCAG 1594 30 100.0 35 .............................. ACTCGAATGCGTTCCGTATCAGTTCCGTAAGCCTC 1659 30 100.0 38 .............................. AAAAAGCACAGAAGGAAAAAGAAAAAAGAGGAGTGGAT 1727 30 100.0 38 .............................. TTGAAGAATTGTACTAACTCACAGGTTAGCGACTTTGT 1795 30 100.0 36 .............................. TACATAAAGATGTTGTCATTGGTGAGAATGCCCGTA 1861 30 100.0 36 .............................. GCTGGAACGTCGATGACAAGTGGAAACGTGTGGCTC 1927 30 100.0 39 .............................. TGTCCCATTCGAGTCCAACGGGCGTATTCATTTACCAAC 1996 30 100.0 36 .............................. CAAGAACGCCTTGCCATTTTGATGCAGACCGTGGAC 2062 30 100.0 36 .............................. GACGAACTGATCGATGCAGTTGAGGGCGAACCCGAC 2128 30 100.0 35 .............................. ACCAATGCCACTTCGTTAAAGGAAAGCCAGCTGAT 2193 30 100.0 38 .............................. CCATCCGCTCGGCTTCCTGATGCAGCGCAAAAATATAG 2261 30 100.0 38 .............................. CATTGATGAAATCCGCTTCCCTCTCACCCTGCTGGTTC 2329 30 100.0 35 .............................. TTCTGTGGTCATTTCACTCGGATTGATTTAGCGAT 2394 30 100.0 37 .............................. TTCAATCAGACGGTGCAACAAATGAATGCCGACCCGA 2461 30 100.0 35 .............................. TTGAGAAGCCATTCAATGAAATACCGTTCCTTCAC 2526 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 21 30 100.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TTGAAACGTATTTGCGGTTGTCCGAAGAGGAGGAAGCCAAACTGCGAAACGAGGTGAGCCAAATGGAAACGAAGGAAGCGAAGCAAGTGATGGAGCTCATCGTCTCGTACGAACAGCGGGGAATGGAAAAGGGAATTCAACAAGGAGTCAAACAAGGGATGAAGCAAGGGCGCCAAAAAGGGATTGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGGTACGATGTCGACACGATCCACGAACTGACCGGGCTGCCGGTTGAGAAGATCGAACGGGTGAAGGGGTAAGCAGAGCAGACTCTTCGCCGTCGAGCCTCACATTGTCGTCGACCCCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATGGTTTTTGGCGCCCTAAACCTACAGCCATCGAGGCTGAAAGCCATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCGCTAGATCGAAATGCTTGATACAACAAGCATTTTTTGG # Right flank : CAGCTTGGTTCAGCTTGTCCAACTCGGCCGTAATGCGTGTTTTTATAAAATCGCGAGCGAGAAAACCCACTTCTTCAGATGTGGGATGAAAGAAGGAGGGAGGTGAAAAGATGCCCACGATCACCTTAAAATTGGAGCTTTACAAACCAACGAAAGCCAAGCAAGAGATGTATGAGAAGATGTCCGACATCAACACCCAATTTGCCAATTGGCTGTTGAATCATCCCGAGCTGAATCAAGCGACGAGCAAACTATTTAAAGCGTTTTCGTCGCAACGGTTTCCTTCTGCCATCGCTTGCCAGACCATTCGAGATGTAAAGTTTCAAAGGATGGCCGAAATTCAGACGCCATTTCCGATTCCTTCAAAAAATGACATGAAGCTAATCGATTTAGCGTGCACATTTCTCCAAGTGTATTCCCATCCTAGACTGATCGAAAGGAGAAAGTTCTTTAGGCCTTTGCCTTGAGCCGTCTTCTTCTTTGTATGTTCTTGTATATGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4842-4081 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQMG01000063.1 Geobacillus proteiniphilus strain 1017 contig00063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 4841 30 100.0 40 .............................. CAGTTGAGTACCGTCCGGACGAATACGTAGTCATTGACTA 4771 30 100.0 35 .............................. TTGGGGATCCTTCCCCTTATCGCCGGCACGAGTTC 4706 30 100.0 38 .............................. AAAGTTTTTCGTCGCCCCATGGAGACCGCGCGCCCCAT 4638 30 100.0 35 .............................. TATATGCAAGCAACAAAATGAAGGTGTCGGTCGTA 4573 30 100.0 36 .............................. CATTCGGAAATCCGATAGTAACAATAAATAATGTGC 4507 30 100.0 35 .............................. TCAACGCCACGAGCCGCAAGTGACTGAATAGCGAC 4442 30 100.0 35 .............................. AACTGTCTGCTTCAATTTTTGACTGCCATTGTTGA 4377 30 100.0 36 .............................. CAGCCATTCTTTTATCACATCACAGCCCTCCCAGGT 4311 30 100.0 37 .............................. GTGTTTCCTTGGGAACAATGCGGTTTTTTTATAAAGA 4244 30 100.0 37 .............................. TCACGTTTGGTCAGCATCGTCTAACACCCCTAAAATC 4177 30 100.0 37 .............................. TATCCGCTCATTGATGACCCACATTCCGGACATTTGA 4110 30 93.3 0 ...............G....A......... | ========== ====== ====== ====== ============================== ======================================== ================== 12 30 99.4 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AAAATCACCCAGATTGTGATGGGGATGTCTGCTCGGACGAGATGGGAGGAAATATGGAAAGGATCGCTCATTAATGTAATTATGCAGCAACTTAAACATGTTGATGTGCTTGTTGTATCTGACAGATAGAGAAGAGGGGCATCTTTGATCATAGTTCCAAAAGAAGACTCCCGTTCGCAATTCAAGCAATAAGCGGAAGATGAATGTCGGCTGGCGCCAGCCAAAACGTATGATAAAATCAATGTGCATTGCGTACAGGCTGTTGACGGACTTAAGCGGCTAAGCAGCGCACGAGACGAGAGGAAATTCAAAGTGCACGCTGTGCATAGCATTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATCTTTTTACACACTTCAAGCCTACAGCCATCGTACATGAACACGATTGACAGAATTTTTGGATTATGGTATTCTGAAAATAACTTTGGAGCAAAAAGATTGATATATCAAGTGCTTTCTGG # Right flank : CTTCGTGTTTTGTGCGAACGATCGTCGCAATAAACGCTTTTCATCACACCGTAAGCAACTCCATGGAGCGCACATAGGTTTAAATCTGTGCGGTGGAGAGAGGTTAAGAGTTGGCGAAGATGACTGAAAGAGATGAATCAGCATTCGCGGGCTATGTCTGTGCGATACCGGCGATCCGCTTCTGCCGTTTGTTTTAGGCAGGAGTTTTTTATTGTTATACAGCCGCTTTATGTCCATCCCGAATTGTCGTTCCAGGAAGAGAAAACGGCGCAATTTGTGTACGAGACGCTGCAATCATTAGGTCATCTTGAACTTTCGCGGCCGACGAAAACGAGCGTCATGGCGCGGCTCATTGGCCAACAGCCAGGCCGGGTCGTCGCCATTCGCGCGGATATGGACGCCCTGCCGATCCAAGAGGAAAACACGTTTGAGTTTGCCTCAAAAAACCCAGGCGTCATGCATGCGTGCGGGCATGACGGCCATACGGCGATGCTTTTGGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //