Array 1 555797-559904 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACVAF010000001.1 Yersinia vastinensis strain IP38594, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 555797 28 100.0 32 ............................ AACACATTGCTAAAGGCGACCCGCTCGATGTG 555857 28 100.0 32 ............................ TGTACCACCAGAATCTTTAGAGCATTGAGATC 555917 28 100.0 32 ............................ AAAGGTTGGAACACTACTAGCCGGACTACGGT 555977 28 100.0 32 ............................ GAGATGAGAACCAACGGTCTGTAAATGCGGTG 556037 28 100.0 32 ............................ AGAATCGGACGATGTTTGGGTTAGCTTCGCGA 556097 28 100.0 32 ............................ GGCACATTGCGGCCTCTAATCCCGCAACTGAA 556157 28 100.0 32 ............................ AAAAACGGCAAAGCTGGTCACTGAATTTGCTA 556217 28 100.0 32 ............................ GTTACTTTTTCATCCAGCATCTTGCCGATGGT 556277 28 100.0 32 ............................ TGATATGTACACTCATATGTACACAACTCATT 556337 28 100.0 32 ............................ TGTATTAATAGGCAATCATCAGGGTTGAGATT 556397 28 100.0 32 ............................ TCCTGCATACCATCCGCGCAGTAATGCCATAA 556457 28 100.0 32 ............................ GAAAGGAAATTAAAATGGCTACTCAATACTTT 556517 28 100.0 32 ............................ ATTCACTGCAACAACGGTAAACGATGCATCGT 556577 28 100.0 32 ............................ AGAGAAACAAATCACCATTAATAGTTATAGAC 556637 28 100.0 32 ............................ ATTCATTCCGTGGCGGTGATGGTCTGGACATA 556697 28 100.0 32 ............................ ATAGCCATCATGGTGTTTAGGGTGATAATCAT 556757 28 100.0 32 ............................ ATGCCGGTTCATCGCACCATTTGATACAGTAA 556817 28 100.0 32 ............................ ACTGACGGCCTCAGCAAGGTAAGTAAGTTGCT 556877 28 100.0 32 ............................ AACAAGCTCTTTCGAGGTGGAGGAGTGAAGCT 556937 28 100.0 32 ............................ ATGACCAACGCATCCAGATTGACGTAATCACC 556997 28 100.0 32 ............................ GGCGGCCAGTGACCCCAACTAGCAGTCGGTCA 557057 28 100.0 32 ............................ AACTCGTCTGGCTTTGCAGAGCGCTGCTGAGT 557117 28 100.0 32 ............................ ATAACGCAATATTGTGAGATTGCGGTCATGAG 557177 28 100.0 32 ............................ AGAGGGCCACCAGCTAACCGCGCCGGAATTAT 557237 28 100.0 32 ............................ TGGATGATTATTTCTTTTGGGGAGTTATTATC 557297 28 100.0 32 ............................ TTGCATGTCGGTTATGAATTTGACGCCATGAT 557357 28 100.0 32 ............................ TGGTAGGCCTGTCGATTAATCTCGATGTGACC 557417 28 100.0 32 ............................ AGCACGCTTACACATGGCTTCGGTAATATCGG 557477 28 100.0 32 ............................ AATGCGAACGTGAAAACGCTTCAATAGAAATG 557537 28 100.0 32 ............................ AAGCAGTAAACGCATACTGATTGAGGTAACTC 557597 28 100.0 32 ............................ TTTCCACACGTTGCGTTGAGCTGCAACCGCTT 557657 28 100.0 32 ............................ CTGAGTTCAAGCGTAACGAGAACACAATCTAC 557717 28 100.0 32 ............................ AGCAATAGCAACCAAAGCAAAAGTAGTGACAT 557777 28 100.0 32 ............................ ATTAGATTTACGGATTGATACCCTCTCGTTGT 557837 28 100.0 32 ............................ TATAACTGGATAGTGAGCAAGTTAAATAAAAT 557897 28 100.0 32 ............................ ACAAAATATTCCTGAAATTATTCCGGTACCGG 557957 28 100.0 32 ............................ AATTTGGCTCAATCGGAACAAGCTTCCACCCT 558017 28 100.0 33 ............................ GTTAATGGAAACGGACAAACAACTAGCGTTTAT 558078 28 100.0 32 ............................ TAAACCGTCACTAATAACTTTCATGTTGCCGA 558138 28 100.0 32 ............................ CTAAGCCAGAATGACGACTCACTAGCATCTAC 558198 28 100.0 32 ............................ AACAATCGAAACAACACGTGTAGCCGAACCGC 558258 28 100.0 32 ............................ ATTGATATCAAGCCCCAAGACTTCACAGCATT 558318 28 100.0 32 ............................ TTGCGAGTAACACAACAACGAAAGACGTTACG 558378 28 100.0 32 ............................ TTACTCTAAATTTGATTGGAAAACGCATGTAT 558438 28 100.0 32 ............................ GATAGCGTGCGCCAAATTTACCAGTACAGGAA 558498 28 100.0 32 ............................ ATTCATCCAGCAAGAACTTGGCGTTGTGATCC 558558 28 100.0 32 ............................ AAATCACCCAAGCGCCCTACCAACTCTGCCAA 558618 28 100.0 32 ............................ AGATCGGCGCGTCAGGGATATGGATAACTATC 558678 28 100.0 32 ............................ TAAAAGTAAATTGTAATTCTGTATATTATCGT 558738 28 100.0 32 ............................ CACGCCAATTCCACCGCCGTAACCATAGCCAT 558798 28 100.0 32 ............................ GGCAATGTTGCGAATGCTAATCCGCGCATCAC 558858 28 100.0 32 ............................ TGCGTTATATATAGCCTCTGCCACATCAACAG 558918 28 100.0 32 ............................ AAGGAAGCATCGGATAAAGCCAAGCGTGAGAT 558978 28 100.0 32 ............................ AACCGGTCACGAACCGTCTTTCGGCTGGCGTC 559038 28 100.0 32 ............................ CGGATAAGATGGTGTCGCGAGATTTTCAAAGC 559098 28 100.0 32 ............................ ATAGATAGCTTCGCGCAAGCTACCCACACCGA 559158 28 100.0 32 ............................ AGCTAAGCGAGAGGCGTTCAGCGTGACTCGAT 559218 28 100.0 32 ............................ ACTGGCAGCGCGATTAATCAAGTTAATCAGTA 559278 28 100.0 32 ............................ AGCGCGGCCAGTGCAGCAATAATCAAGGTGAT 559338 28 100.0 32 ............................ TTGAGTCATATTTCCGCGCAACTGCATCGCGA 559398 28 100.0 32 ............................ TGCGACTATGAGATTGTCGGCCTGGGTGCATT 559458 28 100.0 32 ............................ GGTTTCGTCGGATATTCCAGCGAACACATTCG 559518 28 100.0 32 ............................ AATGTTTAAAGCAGACAATGCTAGGGTGTTCG 559578 28 100.0 32 ............................ AATGACGCGCGCGCATTTGCGGAGTATCAGCT 559638 28 100.0 32 ............................ TGATAGAACCGGATATTAATCAGGAGCTTTAC 559698 28 100.0 34 ............................ CCAGTGTCGGCGTCAACTACGGTAGTTACGCCTT 559760 28 100.0 32 ............................ GGTAGATGCTTTCGGCAGACTTACCCTAATTG 559820 28 100.0 30 ............................ AAAGACCTGGCTTGTTGATATAGAGGGATG 559878 27 78.6 0 ...............A....-GG...GC | ========== ====== ====== ====== ============================ ================================== ================== 69 28 99.7 32 GTTTGCTGCCGTACAGGCAGCTTAGAAA # Left flank : CGCAAGACATCGCTAATCTGATGCAGCAAAACTGGTTACAAGGTCTGCGTGACTACGTTCGATGCAGTGCGGTATTGCCAGTGCCTAAGGCAGTACAATACCGAACGGTGAGGCGAGTACAGGCAAAAAGCGCCCATAACAAGCGGCAGAGATCGATTGCTAAAGGGTGGCTAACTGAACAGCAGGCATTTGAACAAATTCCTGACACCCAACAGAAATCTCTTAGGTTGCCTTTTATTCAACTGCGTAGCCTTTCGAACGGCAATACGATGCGAATTTATATTCAGCATGGTGAATTGCGGGAACAAGCTCAGTTGGGAAGTTTTTCTGCCTACGGTCTAAGTAGCAGTACCACCATACCCTGGTTTTAACCCTTTTTTTTCGACTATTTCTAAGTCATTGTTTTATCATGGTGTAATTAAAGGGGGAGAAAAAAGGGTTTTCCTGTCACTATCCTGCTTTATGTTTAATAAACAGGGTGATGGCATATTTTTATTACG # Right flank : CAAGAAGTTATTCTCCACAACAACTAACTACGACGTGCATATCAGACCCGAAAGCGTATTTTCCTTGTACTTTCCATAACTTACAACCACTCTTAGCGGACGTGCCTTTACCCGCCGGGGATTTTTTCCCAACGTGCGTTTTTGGCCTGAAAGCGCTAGACGAAAATCAATTGGAATGTGAGTTGGCCGGGAGCTTATACAGCTAATCGATATTGAGTTTAACTATAAATATATAAATCAATAGAACTTTCAGCCCCAATACTACCTAAGAACCGATTCGTTTCTGCTGACCAATAGATAGATGGTTTTTCCCCATTCTCTACTTCGATTAAAAGAGAAAAAATGAACGTAACACCATATTTCTCTTTTATTTCTTCCAATACATTAATTTTACATTTTAATAGCGACAATAACTTTCTTGTTTGCTCATCTACATCATAGGACTCTTCCTTCTCCGTACAGATTGACCAACTAGTCTCTGTACTCGGTCTTTTTCTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCCCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //