Array 1 115589-116680 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCEZ01000002.1 Fructilactobacillus sanfranciscensis strain TMW1640 Lactobacillus_sanfranciscensis_TMW_1640_contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 115589 36 100.0 30 .................................... AAAACGAAAACAACAATCAGAAACAGACCA 115655 36 100.0 30 .................................... AGTGAAAGTTACTTTTTTCGTACCTTTGTC 115721 36 100.0 30 .................................... TTAGTTAGTTATGCTAATGGTACTAAAGAT 115787 36 100.0 30 .................................... TATGTTTTAAATTTATTGACATTATCCGTT 115853 36 100.0 30 .................................... AAGGAGAATGTGAAATATGAGTAAATCATT 115919 36 100.0 30 .................................... GAAGCGGTAGACGAATTTAATGAAAAACAG 115985 36 100.0 30 .................................... AAGGTACGTTGCTTTCCATTAACGTTCTAG 116051 36 100.0 30 .................................... GCATGATTGGCTCTTTCAAGCGCCTTGAAG 116117 36 100.0 30 .................................... CCTTGCCTAGTGCATAGTTCAAGGCACTTG 116183 36 100.0 30 .................................... AAAAATTAAAACACTTAATGCTAGTAATGA 116249 36 100.0 30 .................................... AATTTATCGAGAATTATGCTTGCCTTTGGC 116315 36 100.0 30 .................................... ATTTTCCGGAAAATGATGGTAAAACTTCAG 116381 36 100.0 30 .................................... TTCACGGGTGTGTTCAACAAAGTGATCGCC 116447 36 100.0 30 .................................... CTTGTTGAACCAGAACAATAGTTAGCATTG 116513 36 97.2 30 ............C....................... CAACCGTTGCTTCATATACGCGGACTGTTT 116579 36 97.2 30 ............C....................... AACCACTGAAGAAACTAGCAATTCCTTTAA 116645 36 97.2 0 ............C....................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.5 30 GTTTTAGAAGTATGTCATTCTAATGAGATTAAGAGC # Left flank : TAGTGACTAATACTGAGCAAACCCTAAAATTTAAAACAAAAATTAAAAATGATGTATTAAATAATCTAAATGATGATAATCGAAAACGGTTATTTCAACTCGATGCAGAAATGAAAGAGATTTTTTTAGGTGCCGCTTATTTAGATGATTTCCCCATCCAAGTTGATGAAGATTGGGATATTAATAAACAATATGCATATACAGGTACTAAATTGTTGAATGTGAATCATGATAATCCATATGATATAATTAAAGAAGTTCTTAATTTATATGCGAAATTTGATTCAAAAAAGTTGTTAGTTCTTAAAAATCTATTTAATTATTTGTATTCCAATCAGATTGAAAGTCTGGTTCAAATGATTAAAGCTTTAGAATTGAACGTACTTATTTTAGATTTTTCAAGTGAAGATTATTCCACTTTTCTAGAAGAATGCCGTTATTACTGCGTTGACAGAGACTTTGTGAGATGGGATTCTGCTGATAGGTGAATATTACAGACG # Right flank : CAGATATACTCCATTGTGTTATACTGGTAAATGAATATAAAAACTAAACAAAAGGTGGAGAATGCATGTTTGAGAGTTATAAGAGAGTTTTGACAAACCTACCAGAATATTCTAAGAACATTTTTCGTAAGGGATATTTTAAATGGCTATTGGGTCAAGTAAAAGGTTGGAGTAAGATTAGTTATGCTTTATTAGTAGTAAACTTTATTTTACAAGTTTATATTTTAACAACCACTATTATAGGTAGCCCTTCTCCAGAATTATTATGGGGAGCAATTTTTGGATTTATTGGCTCTAACTTAGCAGTATTGACAGTTTGTGGCATTAGTAATTTAAGTCCTATCCAGGGATGGGCTGCGGCATGCTCAGCAGTGTTTATTATCTTATCTGCTGCTATTGCACACAATTATGCTAATATTGTAGAACAATTGGTTTACTTTTTTGCACTAGATTTATTCTGTATCTTAGACCCCCAGTGGAATGAAGACATCCATGTAGAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTATGTCATTCTAATGAGATTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 2524-3593 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCEZ01000025.1 Fructilactobacillus sanfranciscensis strain TMW1640 Lactobacillus_sanfranciscensis_TMW_1640_contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2524 29 96.6 32 ............................C GTAGCTACTGACTGGACACCAGCACCAGAAGA 2585 29 100.0 32 ............................. GATGAGCGATGAAATTACTTCCAAGACTGATT 2646 29 96.6 32 ............................C CTAATTGTTCTCGTGACATTTTGCTTCGCAAA 2707 29 100.0 33 ............................. GTAAATAGTTAAAGGGAAATGTAAATAGTTAAA 2769 29 100.0 32 ............................. TTTGACTTTCGGATTCGAAAATTTATTGTAAG 2830 29 100.0 33 ............................. CATAAAATCACAATTAAGAATGACCAAGTTTTT 2892 29 96.6 32 ............................C TTTGGAAATGTTAGTGGCCAAGAAGCGTTAGC 2953 29 96.6 32 ............................C TTAAACCAGCTAACTCGGAAGCTTAATCAAAG 3014 29 100.0 32 ............................. GTTTCGATCGAACACAACAATAGAACTTTTAA 3075 29 100.0 32 ............................. CGTTCACAGCGGTATCTGTCATGACACTATCA 3136 29 96.6 33 ............................C AACGGTTTTATTTTCAGTTTGGTTTTGAATTTG 3198 29 100.0 32 ............................. AACATGATGATAAATGCTTGTAACAGAAATAT 3259 29 96.6 32 ............................C CAGTTGCTAACTTCTGGTAGATTATCAATCGC 3320 29 96.6 32 ............................C TTCCATGCCATATTTTTTAGCGATTTCATCGT 3381 29 100.0 32 ............................. AGCTAAACATTAAACAACCTACTAAGAAAACT 3442 29 100.0 32 ............................. TATTCGACTTTTTCAGAAGCAATTTTGAAATT 3503 29 100.0 32 ............................. GTAGGGGAAATCAACTTTAACGCCATTATCGG 3564 29 89.7 0 ..........................GTA | G [3587] ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.1 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : ATTTAACTGAACTTGTAAAATATGGGATTCCCCAAACAGCAATGTCACGGGATTATGATCCATTTTTAATGCAAATTCAAGAGGGACAAATTATGCAGTTTCGATTAACAGCCAATCCAACCCATGCTATCAAACGCCCAGACAGTAAGCAGCCACGGATTGTTCCTCACATTACAATCCAGCAACAGGGAAAGTGGTTAGCTGATCGGGCTGACAAGCTGGGATTTCAATTAGTTGAGCAAAATCAAGATAGGTTTTCGAACGTTCCGGAGCTAGCAGCATTTGACATTGTTAACCGGGATTGGCCAATTTTGCGACATGGTGGTCGAAGAATTCGTTTGAGTCGGGTTACTTTTGAAGGACTTTTAAGAGTCAAAAATTTGGAAGAGTTTAAACGAACATTGGAAAACGGAGTTGGACGCGAAAGGGCCTTTGGAATGGGCCTAATGACAGTTATTCCAAGGAATTAAAAAATGCTGTTATGGCGGGAATCGTTTAGT # Right flank : AAGCTGATTCCTGAGACAACTTTTAAGAGAGAGTATAATGAATAAATCGTCTCTCAAAAGGAAGGAATTTTTACATGGATGGTGTCTTTTTGATGTTCTAAAATAGTTTTATTAATAAATGGTATACAAAAATAGAGTTGATGGCAAAATGCCTATCAACTCTATTTATCGTACAGCCTAAATGAGAAATCATTTGTGTATTAGTCTATTTTTATTAGTCTTTGATTTTAATTTTAGCTACGGCATAGTAACAAATGGCAGTAATTATCATAGCTGGGAAAGTTGCGCCAACAGTGTTGACGATAAAGCTGAATTTGTTTAATCCTAAGTAACTTAGAACGCCAATAATCCAGGTAGTAACAGCTAGAAAATTAATACCTTTGGTATACCAGTAAGCACCTTGAGGTTTAGAAAATTCAGAAACCTGATAGTTTTTCTTTTTGATAAGGAAGTAATCAATTAGAAAAATAGCAATTTCTGGCCCCAAGAACATTCCAATA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //