Array 1 180519-181038 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOYD01000005.1 Pseudomonas formosensis strain JCM 18415, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180519 29 100.0 33 ............................. GAATTGACGGGGGCCCGCACAAGCGGTGGAGCA 180581 29 100.0 32 ............................. ACCATGCTGCCGGACGGATCGGTGAGCATCGA 180642 29 100.0 33 ............................. GAATTGACGGGGGCCCGCACAAGCGGTGGAGCA 180704 29 100.0 32 ............................. ACCATGCTGCCGGACGGATCGGTGAGCATCGA 180765 29 100.0 32 ............................. GGCAGGCTTCGGGGAATCTCTCGGAGATCGGC 180826 29 100.0 32 ............................. GTGTCGCCCCGGTCGCGCCATATCTGGTGCAG 180887 29 100.0 32 ............................. GTATCCGGCGCTGTCGAGAACAAGCTGTCGCT 180948 29 100.0 33 ............................. CACGACATCCTGGCCCGGGAGCCAGATCGCAAA 181010 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.6 32 GTGTTCCCCGCACCTGCGGGGATGAACCG # Left flank : CGCAAAAATCATCCCTACTATCGAAGAAGTTCTGGCGGCAGGCGAGATATCACCACCCGAAGCCCCGCCGGAATCAGTTCCACCAGCCATCCCCAACCCGAACAGTATCGGCGACGCCGGTCATAGAGCCCAGTAATGAGCTTTCTAGTTGTAGTCACTGAAAACGTCCCTCCCCGTCTGCGCGGACGTATGGCCATCTGGCTGCTGGAAGTACGCGCAGGTATTTATATCGGCGATGTATCCAGACGTACTCGAGAAATGATCTGGCAACAGCTGAGCGAAGGACATGAGGATGGCAATGTTGTCATGGCTTGGGCCAGTAACAACGAATCCGGCTATGAGTTCCAAACCCTGGGTGCCAACAGACGCTTACCTGTGGAGTTTGATGGCCTCCGTCTAGTCGCTTTTCACCCAGTCGAAAACCCTGATCTTTAACAAAGAAAATTGGTAGATTTTTAGCTCCCGATTTTTCCCTTAGGAAACAGTCGGTTATGCTAAGA # Right flank : AGCTGGGTCTGACCGCGTTCTACGAGGTCACGGACGTGTTCCCCGCACCTGCGGGGATGAACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183026-183481 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOYD01000005.1 Pseudomonas formosensis strain JCM 18415, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183026 29 100.0 32 ............................. TCGGGCGGCCTGCGCATTGTCGTGTTCCAGGA 183087 29 100.0 32 ............................. TCGCTGGAGGTGGAGTGATGAGCATCGTGATA 183148 29 100.0 32 ............................. CTCGCCCTGCTGTATGCGGGCCTGTACGATCA 183209 29 100.0 32 ............................. TTGTAGGCCTGTTCCACCCGCAGGCTGAACGC 183270 29 100.0 32 ............................. CGCACGATGTCGCAAGAGGACTACGACAACAT 183331 29 100.0 32 ............................. CACTATTAGCCCCGCCACGTTCGGCGCTGGCT 183392 29 100.0 32 ............................. CGAGTGCGCAGTTCCTGGCCGTGTTCCGGCAC 183453 29 86.2 0 .......................CT..TT | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGTTCCCCGCACCTGCGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGG # Right flank : TGTCGCGCGGATCAGATTGCCCCTCGGGATCCTGGCGATAGAACGCAGTCAGATGCCCGTACACCGCTGGCCAGGCTTCACGCAGCGGCGCGGGTCGCTCGAAGAAGGTTTCCGAGAGCACGGCGAAGAACTCGGCGGGGTCCTCCAGAGCATAGTCGTCCACCGGCAGTGGCAGGCTCTTTTCGGTGCGTTCGGCCAGGTCGTCCCAGGCGGCCTGCATGTCCCGCTGCCAGGCCTGCGGATCCATGTCCGGGTGCAGCGGTGGTGCGCCGTTCGCGCTGGCATCGCGCATGTCCAGGGTATGGGCCAGCTCATGAATAACCACGTTGTAGCCGTCGCCCTGGCCGGAGTGCCAGACGTCCTCCAGAGACAGCACTACAGGACCGCGTTCCCAGGCCTCGCCGCTGCGTTCACTGACCTCCTGGTGGACTATGCCGAATTCGTCTTCCCAGCTGTGCTCGGCGACAAAGGGGCCGTCGTAGAGGATCAGGGTTTGCCAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //