Array 1 1117376-1116240 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJV010000001.1 Kitasatospora kifunensis strain DSM 41654 Ga0436962_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1117375 29 100.0 32 ............................. GGTGGCCGGCAGACGTCGTGGGGGCTGTGGCA 1117314 29 100.0 40 ............................. GCCAGCCCCAGGGCCCGGATGTGCTCGTGGCAGTTGATGG 1117245 29 100.0 32 ............................. GCCTCCTCGATGACGAAGACTACGGACCCAAA 1117184 29 100.0 32 ............................. TGGTAGGCGGCGAACGGGTAGTAGACGTGGAT 1117123 29 100.0 32 ............................. TGTTCGTGCCAGTGCTGCCACTGGGGCAGGCA 1117062 29 100.0 32 ............................. ACGCGGGCGCTGGATACGCGGACGCCGGCTTC 1117001 29 100.0 32 ............................. AACACCATGGACCAGGAGCACGCGCTCGGCAA 1116940 29 96.6 33 .................A........... CCGTTGTCCACCGCCTCCACGATCAGCTCGTTG 1116878 29 100.0 32 ............................. GCCGCCAAGACGCCCGTGCCGACGACGGTGAA 1116817 29 100.0 32 ............................. GCCACCGCCCAGGTCAAGGTGTCTTCGGCGTG 1116756 29 96.6 32 ...T......................... AGGCAGGGCTACCTCAACCCGACCACGGTCTC 1116695 29 96.6 32 ............T................ AGGTTGAGGTCGACGTTGCTCTCGAAGATCGC 1116634 29 96.6 32 ............T................ AGGCAGGGCTACCTCAACCCGACCACGGTCTC 1116573 29 96.6 32 .......................A..... GACACCTGCTCGGACCTCAACGCCCAGCTCTC 1116512 29 100.0 32 ............................. TTGCGGAACTCCGATTCGGAGTCGACGTTGTG 1116451 29 100.0 32 ............................. TCGTGGGCGTATCCGGTCAGCGCCCCGCAGCA 1116390 29 93.1 32 ...T............T............ ATCGCCGACGCCGTCATGGCGCAGGGCAGGTT 1116329 29 100.0 32 ............................. CACCTCGCGGCTTCGAACGGTCGCGGCCGGAA 1116268 29 79.3 0 ......................GCAGAA. | ========== ====== ====== ====== ============================= ======================================== ================== 19 29 97.7 33 CTGCTCCCCGTGCACGCGGGGATGGTCCC # Left flank : GAACCACACGTCGCACTGGGCGAGCTCGCCGGGCCGGTAGACCGTCCGCGAGACCGGGTCCACCGGCAGATAGCCCGGACGCAGCTCTCGCACCCGCTCACGCAGGATCGTCAGCCCGCGTTCCCACCCGATCCGCTCCGCGATCACGGTGACCGGCATCGTCGGAGTCTGCTTCAAGAGCTCGCGGATCGCCGGTTCGACCGCGTCCACAGCCGAGCCTTTTAGCGGACGCTGGTATCTCGGCGGCCGATCCGAGGCCAGAGCCCGCGACACGGTGCCTCTGGAGATCCCCAGCTGCCGGGCCACCGCCCGGGCCGACAGGCCCTCGGCCCGGTGCAGCCGGCGAATCTCTGCCCAGTCCTCCACGCGGATCACCCTCTCTTCCTCCTGACTCCAGACCCATGAAGTCAGAATGATCAAGAGATCGCAGAGCGGCCCGCTTTTGATCCGCCGTCCGTGGTCCTCGTTTCACCCGTTGCCGACAAGGAGCAACTGGCCGA # Right flank : AGCGCACCGCCGGCACGCGTCCCCCTGGGGACCCATCCCGCAGGCGCGGGGAGCAGTTCGCCTGGCCCGTGCTCGCCAAGTTCCTGACGGGAGCAACTCCGCAGGTGCGGGGGCAGGTGGGGGCTGAACCTCGCACTCGACCTGCAGCGAGGACCAACCCCGCAGGCGCGAGGAGCAGAGCGCGACCAGCTGCTGGGCCAGCTGCGGTCAGGGGCCATCCCCGCGTGGGCGGGGAACAGCTCGACACAGACAACCAGCCGATCGTGGGCCCGGGACCATCCCCGCGAGTGCGGGGAGCAGGTGGCCGGGCGGATCGGTCGGTGGGATCGCTGAGGACCATCCCCGCACTGGCGGGATGGTCCCTGCGCAAGCGTAGACGGTCGGCAGGATCAGCTGCTCCCCGCACTCGGGGGGATGGTCCCACCACCGACACCGAGAAGCAGCTCGATGGGGGCTGCTCCCCGTGCACGCGGGGATGGCTCCGTCCTGGCGGCCTCTCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1120074-1119679 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJV010000001.1 Kitasatospora kifunensis strain DSM 41654 Ga0436962_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1120073 29 100.0 32 ............................. GGGCGATCGCGAACGGAGGGCCGAAGGCCCGT 1120012 29 100.0 32 ............................. CACTCGCCCCGACTATCGCCACCACCGGACCC 1119951 29 100.0 32 ............................. CATCGCGTCCGCCACCGCCTACTTCCAGGACC 1119890 29 100.0 32 ............................. GCCCGGGCGACCTCGACGGCGCCCGCGAAGTC 1119829 29 100.0 32 ............................. TGCACACCGCGCTCCGAGCACTCGCCCTCCCG 1119768 29 100.0 32 ............................. GCGTGGCGGGCGCATCAGGAGCAACTGGCCGA 1119707 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 CTGCTCCCCGTGCACGCGGGGATGGTCCC # Left flank : CTGACTGCATGTCAGCTTGATCAATGAGACGGCAGGGCAAGGAAGATGCCCGGTCTCTGTCGTCGTGAGCCCCGGAGGAGTCTGTCGTGTCGGCCGTGCCGCCTGTTGTGGCTTCGTCCATCATTCCCTGGCTGATCGCGGCGGTCTTTGCATCGCTGGCGATCGGTCTGACGGCGGCCCTCATCGCGGTGAAGGAGGGTGCGTCGAACGGTTCGGCTGTGAAGTCTGCCGGCAAGGCCTTCGGGGGTGCGATGACGCTCTGCGTGGCGATCTTGGCAGTTGTTCGGTTCCGGTGATCTGGACCGCGTCGGCTTGTTGTGGGCCCGGGGCTGTTATCGACAGGGTTTGGATGTGTCGAACCTTCCTGGTCATTGCGTAGTCTCGCCCAGGTGGGCTTACCGTCGCTTGCTGTCTGGGATGGGTGTTTTGGGTGTTATGGCCGAGTCGGGGAAACTGGTAAGAATCCGGCGGGCGCCTGACAAAGGTGCAGGTCACGAAGT # Right flank : GCGTGGCGGGCGCATCAGGAGTGTCGGCAACGGCTGAAATCGGGCCGGTCTGATCGGTTCAAACGTGGGCCATCGTGCGGTCTTGTCAGTCGTTGTCGGTGGTGCGGGTGCGGCCGAGTTCGCGGCCGCGCATGCGGTAGGACTCGCCTTTGAGGGAGTGGACCTCGGCGTGGTGGACGAGTCGGTCGATCATGGCGGCGGCGACGGTCTCATCGCCGAAGGTCTCGCCCCAGCGTCCGAAGGGCTTGTTCGAGGTGACGATCACGCTGGCCCTCTCGTAGCGGTTCGAGATCAGCTGGAAGAACAGGTTCGCGGCCTCTGATTCGAACGGGATGTAGCCGACCTCGTCGATCACGATCAGCGGATAGCGGCCGAGCTTGACGAGCTCGTCCTGGAGGCGGCCGGCCTGGTGGGCGGCGGCGAGGCGGTCGACCCACTGGGCGGCGGTGGCGAAGGCGACCCGGTGGCCTGCCTGGCAGGCCCGAACGGCGAGTCCGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1135423-1136183 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJV010000001.1 Kitasatospora kifunensis strain DSM 41654 Ga0436962_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1135423 29 100.0 33 ............................. GGGCTCATCCGGTCCCAGGTCCGGCCGCTCTTG 1135485 29 100.0 32 ............................. CCAGCTCCACCAGCAGCGCCTCGACCAGCGCC 1135546 29 100.0 32 ............................. CAGGCCAGGTTGAGCCGGAATTCCTGCTGGTG 1135607 29 100.0 32 ............................. TTCTACATGGGCGGCAGCGCGGGTCAGCTCGC 1135668 29 100.0 32 ............................. ACGAACCGATACGTGGTCGTCGGATCGAGCAG 1135729 28 96.6 32 ....-........................ CCGAGGTCGCACTCCTCCAGCAGCGTGAGGCG 1135789 29 100.0 32 ............................. GATCAGGAATTTGCCCCGTACGTCGACAATTT 1135850 29 79.3 32 ..A...T...C..CT......T....... TCTCCCTGGACGGACGATCTCAGCAACTGCCT 1135911 29 86.2 32 ..........C..CT......T....... TGATCCCGCGCCCCACCCAAACGCCCATGGCC 1135972 29 86.2 32 ..........C..CT......T....... ACCGGCGGCGGCCCGTCGCAGGCCCTGTACGG 1136033 29 86.2 29 ..........C..CT...........G.. GTGGTGATGGGCATAATCGGCATCGTCGG 1136091 29 75.9 32 .G...T...CC........AAT....... CAGAGGAACCCGGTGTCGGGCTGCGGTCCCAT CT [1136106] 1136154 29 82.8 0 ..........C..CT......T...C... | G [1136181] ========== ====== ====== ====== ============================= ================================= ================== 13 29 91.8 32 CTGCTCCCCGTGCACGCGGGGATGGTCCC # Left flank : GGGCACCAACTGGGACACGTGGAACGCTGGCGAGGCCTGGTGACCGTCATCGTGCTGACCAACTGCCCAGCCGGCCTCCGTGGCTTCCTCACCCGCTGGCTCCTGGAGATCTCCGCCGGTGTCTTCATTGGCACGCCATCAGCGCGAATTCGGGACCTACTGTGGAGTGAAGTCCGAGCCTACGCAGGCCAGGGCCGTGCCTTACTCGTCCACAGCACCAACACCGAACAGGGCTTCACCTTCAGTACCCACGACCACGCCTGGGAGCCCACCGACCACGAAGGCCTGACGCTGATTCACCGCCCCGCCACACCCCCGATCACGACGGCCACCGATCCGAAGCCGGGCTGGAGCAAAGCCGCGAAGCGCCGCTTCGGGCGACGCTGACAGCTACATTTATGGGCATCTGAATTACAGGGCGTAATTTGACTGAAATGTCGGCTTCTCAAAAAGTGGTGCAACTCGGCCGTCCACCCTAACAAAGTTGTAGGTCACGCAGA # Right flank : CGGACCACTTGGAACAGTGGAGCACACTACAGGGACCTGGCCATCACTCGAATGAGTGATGGCGCTTCAGGCGCCTTCCACTCGCCGTGCCCTACCGGCATACTGCGTCTGGGACATCTATACCCGAGCCACACTTCACTGGCATTGGCTCCTGGGCGATGATCAGGGTGCCACTGGGGCCAATTCGCCCAGCACGCCCGATCGCCGTGGGGCAACGGTGCGTGTCCCCCCTCGGACACCGACTGATACCCCACGGGGATCATTCAAGTGCTGGTTGAGATTCATCTCAACCAGCACTTTCTGCTTTCCGGAATCGTACGTGAGCACCAGGCCCAACTTCTGGTAGAGGTCAGCGCGTTCGGCCGGCTCGGTGCGGGTGAGGATGATGACGAGGTCGCTGTTGGCTCGGACGAGTGAAGCGATGTCGTCGCGCGTGGGCTGGGCTCGGCGCGCGGATTGCGCGGCGCGGAGTTCGGCCTCGGCTCGGGCGCGGGTGGCCT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //