Array 1 6057-4501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWJC01000035.1 Herbaspirillum rubrisubalbicans strain Os44 35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6056 29 100.0 32 ............................. CCCGGACAAAATGCGATTGTGCAGCGCATTCG 5995 29 100.0 32 ............................. ACTGCGGCCGTGGGCGACTCGATGGACTACGC 5934 29 100.0 33 ............................. CACCTGGCCGGCACTGGCTGCGCCGTGGTCGAA 5872 29 100.0 32 ............................. GTCGGCGACTACTCCGACGCGGCCAAGGATTA 5811 29 100.0 32 ............................. AGCAATCTAGTCCTGCCGGAAGCCCGTCTGCA 5750 29 100.0 32 ............................. GCGGCGCAATGGGCCAAGTAGTCATCCGTGAA 5689 29 100.0 32 ............................. CGCAGTAAAGATAGTAATTCCAGATTTCAGTC 5628 29 100.0 32 ............................. GCCGTGGCCCTGGGCCAAATCACGCGCCTGCC 5567 29 100.0 32 ............................. ACCTGGACGCGGATTTGCGCGCAGGGTGGGGA 5506 29 100.0 32 ............................. TCCAGCATCGGCGGTCAGTCGACCGGCATTGA 5445 29 100.0 32 ............................. AGTTAGTTTGATACAGAATGTCTACACGAGAA 5384 29 100.0 32 ............................. GCTGGCCTTCAAACACGCCAGGGTCATACACA 5323 29 96.6 33 .....T....................... TCGCGCGCACCAGATCCACTCTCTCCACCTACG 5261 29 100.0 32 ............................. CCCGGATGCACTGTGAAAACGTCCTCGCGGTA 5200 29 100.0 32 ............................. GAGCATTGAGGATGTACGACCCGACGAACTCG 5139 29 100.0 32 ............................. TCGCTGCCGGTTTTTGTCATAGATACCGTGAT 5078 29 100.0 32 ............................. CCCACACGCGATGCCTGCGGTGCGCTGGCCAG 5017 29 100.0 32 ............................. CCGCGCAAGGGCATCGTCAGCAGCTACAACCC 4956 29 100.0 32 ............................. TTCGATGGTGCGGGATTTCAGCACTACAGCCA 4895 29 100.0 32 ............................. TCGTCCAACGAAAACTTGCTCATGGCACGGAA 4834 29 100.0 32 ............................. GTCGAGTGGCGCATCCTGCGCGCCTGCGACTA 4773 29 100.0 32 ............................. TACCCGCCGACTTCTTTTGACGGAAGTAGGAC 4712 29 100.0 32 ............................. GACGCCCGTTTCGATGTCGCCCACGCGGCTGC 4651 29 100.0 32 ............................. CGGTCGTTGCGATTCCGGCGTCTTTGCGCCAG 4590 29 100.0 32 ............................. TGGGAGCGCCTTGTTCTCCCAGGATGCGCGCC 4529 29 96.6 0 ..............G.............. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.7 32 CTGTTCCCCGCGCACGCGGGGATGAACCG # Left flank : CTTGCAGATCAGGATCTGCTCCCTCGCTTTTCGGATCTGTAGCTAACGTGTTCCGGCGCGATGATGCGCCGACTCCATCGGCGGACAGTCTTCGTGAAACTCCACTGCGAAATTGCCGATTGAAACGGTCTTCCGCCATGAAACACGCCTACGAAATCTCGATGTCGATGCACCACAAGGAAGACTTGTCAGTCAGAACCCTTGTCGAAGAACTGCGCCTTCTCACCAACGAGCTTGAGAAGCTATCTCCATCGCTCAATGAATGGCTCCTCACCGGTGAAACCCGTGATTCAGCACTGCTCTATGACGTATTTTCCAGCAACACGGGCACGACATCAGCCCTTGCCGTTCTTGAAACTCGCCTCAAAGGAGCGATCGATCCAAGAATTATCTCGATCTGGAATGGTAAGGAAGGACATGCAGCCGCATCACTCAGAATCATGGCACGCCCGGCTCCGCACTTGAGCCTTGTGACGTTCGTCGGTCGTCCCCTGTCGTTC # Right flank : TCAACGTTTGCCGTCAGTATTCGATTGAACGTCCGCGACATCAACAGCGCTTCCACTGCGGTAGTAACGTCCAACGCGGTTGACCAGCGGTACCAACATCAACCAGAACGCATCGATGTCGGTCTCCGAGAGCAGTGGTTCGCTCACCGCAGTGGCGGGGTGTGACATCAACCTCAAGGCCAGCAGCACTTCTGCTGACGACGCAACTCTGATTGCGCAACGTTTCGTGAATCTGCCCACCGTTCACGAAACGTCCCAGGAAAAAATCACCTCGGACAACAACAACCACGCCGAGGTCAAACGTGATAACGCCATCGGCAGCACGGTACAAGGCAAAGAGATCAGCATCACGGCTGATGGTAGACATTTAATTGCGACCAGTCTTGGAGCGCAGGGAAGAGAAGATGGCGGGTGGAGTGCCGCCGAGTGATCCCTATTACAGCTTGCTGAAGGGACTTCAGGACAAGGGGGCCACATATCAGGAAGAAATGGTGGCTCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCCCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //