Array 1 1909-2367 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_FKJL01000039.1 Mycobacterium avium subsp. hominissuis isolate 12_062, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	============================	==================================	==================
      1909	    28	 100.0	    34	............................	GTCGACGCCGTCGAGCGGCTTCTCGGTGTCCTCG	
      1971	    28	 100.0	    34	............................	CAGCAGCCCGCCGCGCAGGCCCAGGCACAGCCCA	
      2033	    28	 100.0	    33	............................	GCACGCCGATAGCGCCACCGCGGCTGCTGCCAC 	
      2094	    28	 100.0	    33	............................	GATCGCGCCGCAGGACATCTCCGATGACGCGCA 	
      2155	    28	  96.4	    33	A...........................	CGATGCGCCATCGGTGGGCGCCGCCGTCCACTC 	
      2216	    28	  96.4	    34	G...........................	GTGCAACGCCCTACACATACGCGGCGTACCTGGA	
      2278	    28	 100.0	    34	............................	CCTGGAGCCGACGTGGTCATGGTCGAACTCCGGC	
      2340	    28	  96.4	     0	.....................G......	|                                 	
==========	======	======	======	============================	==================================	==================
         8	    28	  98.6	    34	CTGCTCCCCGCGCAAGCGGGGATGAACC	                                  	       

# Left flank :   GCGACCGGCGCACCCCCAGTCGCCGTCGAGCACGCCGACATCACCGCCGCGGCGGCTGCCACGGCGGCGATCGCGTACCCGTTGTGCCAGGTCATGGGTTCGATTCTTCCAGATGGTGTCGAACAACCCGCCGAATCCGGTGTCACGTCCCCCGGCTGAATGCCTTGAGCGCGCGTGGGATTCATCGGTCGGCCTGGTCCGTGAGGCGCTGTTCCACGCCGCGGAGGTCGGCTACCGCAGCGGTGAGCTTCGCCTGTTCCAGGAGCTCGATCACGCCGTGCAGTCGGGTCCGGGCTCCCGTGAGGTCGTCGTGGATCGAGCCGTGCAGGTTCGTGATCAGCTCGTGGTAGCTGGTGCTCATACGTGGCAGCGTGGCAGGCGTCCGCCGACGGAGACGTACGCGGCGCGTGTACGAGGCGCGCTCGCCGGAGGTGGTGATCGTTAGCTGGTCACAGGTTTCAAACCGGGCATTCGGGCTGTATCATCCCTGGTCAGTGAGT
# Right flank :  CGCGGGATGAACCGTCGTGCCGCGTTCGTGGACCTGGTGCCGACGAGCAGTAGGAACCGTTGCGCTGCAGTCCGTTCCGCGAAAGTTGGAACAAACTTTTTGCTTTTGTCCCACCGTCCCCGCTGACCAGGGGACTCTCGATTATCGAGACGGATTCGGGGTCTGATCAGGCACGATCCGGCGCCTTCGTTGCGGACCACTGTCCAATCTGCTTGCTACAACTGGAGGCACAAATCAAACATCCCGTACGAAAGGAGTCGCCGTGACTGCGACGCTGCCCGACGATTTGATCACCCGCCCGGCCGGGGCCCGGCGTGCCCGCGTGACCCCGCCGACCATCACCCGCTGGATCGCCCGCGGTGTCCTTGCCGGATACCAGATCGGCGGAAGGGTGTTCGTCAGCGAAGCCGAGATCGACTCGATCCTGGCGAACGCCCGCATCCCCGTCACTGCCGCCTGAGACGAGAAGAACCCGGTGTTGTCGCACCGGGCTCGTCTTC

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTGCTCCCCGCGCAAGCGGGGATGAACC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGCTCCCCGCGCAAGCGGGGATGATCC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-10.50,-8.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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