Array 1 1115-1666 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLS01000130.1 Haloarcula californiae ATCC 33799 contig_130, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1115 30 100.0 36 .............................. CTGGACGTCGTCGACGTCGGGGACCTGTTGCCCCTG 1181 30 100.0 36 .............................. CTCTTTCAGTTCTTCTTCGACGCGCTGCTCGACGCG 1247 30 100.0 35 .............................. GTGGCTGTCTAACTCGGCCTGCGTGGCCGTATCAA 1312 30 100.0 34 .............................. ACCACCTGTAGCGAGCCACAGACATTACAGGCAA 1376 30 100.0 35 .............................. GCGCCGGCGGCGGAGGTGACGCTCCGAGAGTTCTC 1441 30 100.0 35 .............................. GAAGACGAGAACCGCATAGAAGCCACTGAGAGCGA 1506 30 100.0 36 .............................. CACTTTCATCACGCCACGCGCTGCCGTCGGCGTGGT 1572 30 100.0 35 .............................. ACCCAGAAGGACGGCCGACAGCAGACCAAAGAGAG 1637 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 100.0 35 GTTTCAGACGGACCCTTGGGCGGTTGAAGC # Left flank : GTGAAGCAGAGAAGGTCACGTTGGCAGAGGCGCTTGCAGAGTGATGCGAGTATACCCGCGGCGAGCGTGGGTGGGATATTGGGTCACGTGTCAGCGGGTCGTTGGTCGGCGATCCCGTGCGAGGTGTTGAGGTATGAGCTGTACCGTTGAGGACCGCAAGCGGGTTCGGCGGGCTGCGCGGGCTATCCGTGAGGAGGTGCCGACCGAATCCGTTGGCGTGCTTACGCCGAGCGCAAGTCAGTACGGTGAATGGACGTTAGATGCGGTGTTACGTGATTCGAAGGGTGTGCCGCCAGAGGTACCTCGGGAGTTGGCGTTGGCTGGATTGACGTTACAGTCCACACCGTCGCAGGCTGAGTTTCAACACGTGGCAGCGGCGGCGTAGGACGGTGATGGCTATTTTCATCGACCCCCCGGGGGTTGCGAGGGTATTGGCGGTCGACGAAAATAGTGAAGTGAAACCAGGCTAGAAATAGGCTGTGTCCCGGGAATCGGGCATG # Right flank : CATCTCGGGGTACTCGTCGCCGCCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGGGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 37-590 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLS01000030.1 Haloarcula californiae ATCC 33799 contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 37 30 100.0 35 .............................. TTGACGCAATTCGCTGAGTGCGCCATCGGCTATAT 102 30 100.0 37 .............................. TACGACCTCGCTCAGGCCGGTCTCTCGATGGAGGACG 169 30 100.0 36 .............................. GTTCCGAGCGCGTCGTCATAACTCACGTTCGCATCG 235 30 100.0 35 .............................. TTGAATCGTCTCGGCAGGGTTGACCGCTGCAGGCA 300 30 100.0 33 .............................. CGCCAGTTAGGGCTGAAGCATTATCGACCAGGA 363 30 100.0 36 .............................. GGCTCCTTTGCACAAAGAGCGATATCTTCCCGATAG 429 30 100.0 37 .............................. GGTCGGCATCGGCAGATTTGACCGCTGGAAGCCACGA 496 30 100.0 35 .............................. AGGTCCCACCCGTCGCCGGTGACTGTTACGTCCGG 561 30 86.7 0 ...............AT.G.C......... | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.5 36 GTTACAGACGGACCCTCGTGGGGTTGAAGC # Left flank : GGCGTAGTCCAGAACGTCCTGAATGAACCGGACGTAG # Right flank : CAATTCGCCCGCATCACAGTTATCGAAGGTTATCGTTACCACCGACCTCGTCTACGGCGACCGACACAAACGGCTTAGTATTTGATCTGGTGTGATACGGATTAGTGTAGATTATTTTCGGATTACACCGGCTCCGAGGAGGGTGGACACCGGTAAATTGCTACACAACTCCGTATGAGGCATCGCGATAGAAGCGCTGTTCGCTAAACCGCTCGGTGAAATCGGCGTCCCACTGCTTGGCCTCAAGCACGGCCGCCGACAGCCCGTACATGCCCTCGGTGTTGCCGTCGCGTTTCTGTCGCGCCGCATCTCGCCGGGCGTCAGCAGACTCGAAGAGCAAGCGGTCATTGTAGCCGCCGCTGTCCGGGAGTGTCGTCTCCTGGAGTGTATCGAAACCGAGGATATCGAGTACTTCGTCGATCCATGCGCCCAGCAGTTCGTCTTCGTTGTACGACGGCAGCAGGTCGCCTTCGCCTTCCCAGAGCGCTTGGAGATCCTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGGACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 267-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLS01000047.1 Haloarcula californiae ATCC 33799 contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 266 30 100.0 37 .............................. GTCTGGACGTAGGTGAACAGCAGCTCGGGAATCGACC 199 30 100.0 35 .............................. GCCGTCGGAGTCCTGCACCTTGTTGATACGCTCGA 134 30 100.0 37 .............................. CAGCAAAACTCAACCGACTCGTGTGGTGTGTCGACCG 67 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 GTTACAGACGGACCCTCGTGGGGTTGAAGC # Left flank : GCAGCGAGGACAGGTAACACCATCACGCCAGCGAACCTGCTCCAACAGGTCCGCTGCGACCGATTCCGACCCAAACACATCTAGCGGAATCATTCGTGTCGGGCACCGCTGGCGCGGTGCCCTTGTCCTCTTCGACTCCGCAACTACTGCTCTCCAGTATCAACAATCTCCTACGCAAGAGCGTTTCTCAAATATCTCCGGCGGTATCTCACGCACGTACAGAACTCTGTATTCGAGGGCGAGCTCACAGAGGGGACACTCGTTGAAGTCAAAGAGACCCTCCAATCAATGCTTGAGGAAGGGGAATCCGTGATGGTTTATCGGATGGACTCGGAGAGTTATGTCGAGCGATCCGTGTACGGTGACGATCCAATGGACGACCAACAATTCCTCTAGGTATTTTCGTCGACCCCCGGGGGGTTGCGGGGGTATTGGCGGTCGACGAAAATAGTGAAGTGAAACCAGGCTAGAAATAGGCTGTGTCCCGGAAATCGGGCATG # Right flank : CATAGTGTTCGTCGATACAACACACGTCGTGTCGGGAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGGACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.30,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 9873-9514 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLS01000047.1 Haloarcula californiae ATCC 33799 contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9872 30 100.0 36 .............................. ACATCACGGAGCCGATAGTGCCCGGCAGGCGGCCCG 9806 30 100.0 37 .............................. CACTCTGGGTCACTCGGAACCTCACCTTCAGTTGTCT 9739 30 100.0 36 .............................. AACCGTCTTTGTCGCTGACGACAGTTCTCCGCCCCC 9673 30 100.0 35 .............................. TCGCGCTCGCGGCGTTGCGCCTCTGGCGTCGACGT 9608 30 96.7 35 ............A................. GTCTGTCCGCTCGACCGTGCAGTCCATGCCGGTGA 9543 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 98.9 36 GTTTCAGACGGACCCTTGGGCGGTTGAAGC # Left flank : GGGCCTGCAGCAGCAGGTCACAGAGTGCGTTCCC # Right flank : AGACGGACTCGTGTCGCAGGGAGAAATATCCCAACAGCAGACATATCCATACAACAGTTAATATAGTGGAAGTGTAGAAATTAAACGTATACAGAGCCCCTACAAGCCAATTCCACTTTCATTCCGCAAAGCTGGCATTTATTTACCACCCAACTGATATAGATAGTGATATGCAAGCAACTCCTCCATGGTTGGTGATGTAACCAGTGCGGATTCTCACACGACTCTCTGCGCGAACAGACGCCGCCTACGACAATACGTACCACAACAAGCTTCAGGGCCGCATCTGGCAGGCCCTCAAAGACAGCGAGTACGACGCCCTCCACGACAAAAAACCAGCCAAAACCATTCGTATACAGCAATCCCTTCCCCCCGCAGGACATGGACGAGGGTGACGAACGAACGCTCCTGGTTGCCTCGCCCGAGGAATCCCTGCTCGCCCACATCGCCGAGGACCTCACGCACAACCGGGAGCTAAATATCGGCGAGATGCCCTTCCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGGGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-B [Matched known repeat from this family], //