Array 1 311023-312296 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007493.1 Thermofilum adornatus 1505 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 311023 25 100.0 42 ......................... GTAATACATCGCTATTGCAAACTCAAGATCATTCAGGCTAAT 311090 25 100.0 40 ......................... ATGCTCGACCCCCAGCTGTGATAGCGCGTAGTGGAGGACA 311155 25 100.0 42 ......................... CAAACGAGGCGTGGAGAGCAGCAGCCATGCAGGCAGCCGACC 311222 25 100.0 41 ......................... TTACCACCTTGATTGCAATGGTATTGTTGTCTCCGAATTCC 311288 25 100.0 40 ......................... TGCGCTATGCGAAGCTCAGGGAGACTTTTCCAGAGCTGCA 311353 25 100.0 45 ......................... ACAGGCTAGAACGACAGCTTGCACCTACACCAACAACAAGCTAAT 311423 25 100.0 39 ......................... AGAATCATCCTTGCCACGCCACTTGAGCTTCTCCTCCCT 311487 25 100.0 39 ......................... AGGATGGAAAGATAAAGGTCACGGCGCTGAAGAAGCTCA 311551 25 100.0 41 ......................... ATTGTAACATATCTGCCGAAGCCGACCCTGCCGCCCCCGAA 311617 25 100.0 40 ......................... GTCATAGAGGACTACAGGCCAGACATCGGCATCAAGCCTT 311682 25 100.0 40 ......................... CTCCCTGAAGTGCTCGTTTAGAAACCTCTTGAGGAGCCAG 311747 25 100.0 42 ......................... TTCTCGTAGTCCACGACCCAGAGCTCGACCGCGTGTATAGCC 311814 25 100.0 38 ......................... ACGCCCAGGTACTAGTAAACGCCCCACAGCCGGGAACA 311877 25 100.0 38 ......................... CTAGACAAGTCTTCCTCAACTACAAGAAGATATACAAC 311940 25 100.0 44 ......................... TCCAGGGCCTAGGCTTAAGGTTCCCAGACCGCTAAAACTTTGTT 312009 25 100.0 42 ......................... TGAGGGTAGATGCCAATCCTCCGAGTAGCACCTCTTATTCAG 312076 25 100.0 38 ......................... TAGTTGGAAGTGTATGCAGATTTAACAATTTCTTCGGC 312139 25 100.0 42 ......................... GTCGGAAACAACGAAATGCTATTCAACGTAAAAGGCAGATTA 312206 25 100.0 41 ......................... AACAGGAAAATTGCGTCATTCATCTCCTTAGCCATTCTGAG 312272 25 88.0 0 ....T....T.......G....... | ========== ====== ====== ====== ========================= ============================================= ================== 20 25 99.4 41 GATGCAACTCAGAAAGAATTGAAAG # Left flank : TAGCAACAATACACGAGAAAGCCCCAAACTCCCAAGAAGGAAAAACCATCCTACAAAGAAAAGACGTCAAACTATACACATTGACACTCGCAAACAGGGAAAACATGCCACCAATGATAGCAAAAGAAGTCGCAACACTAATCACGAAAACGGCATAAACAAGCAACACCTGGCCCATCACTGGAACAAACTCCCCAGAGCCACATATCCCAAGATCGCCGACTCCTACACGTCCAAACACAAATTAATCGTAAATCATTGTAAAATACTTCCCAACACGTAGCCTAAAAGTTATTTATGAAGTTTCTCGTCGAGAGAGTTATTTTAAACAGAGATTACGGGAAAACTTCCCGACCTCAAACGGGGTGTTTCGGGAAAATTCCCTAACGGGAAGTTTCAGAAGTTTCTAATGTGTAAATTTGAGTGCTAGGGCAGTTTTGCAGACTTCTTGATAAAAATAAACGTTAAACATATAAACCCCTCCTGGGTAAAAAATTTCG # Right flank : GAGCTGGGTAAAATCATATTGCAAATGTTCTTCTTGGTGCGGTTTAAGTCAAGTAATATATTTGTGCTAAGTAGAAGGTAACGGGTCAAATTAGCTTTGCCAGTATCTCTCGTACGATTTCTTCATTTACCTCGAACGGCGCGTTTTGCAAGTTACGCTTGTACTTTAGGCCCTCCGAAACATATAGGTCAAGCTGTTTCTCGTCTATACCGAGCTCCCTGAGGCTTGTCGGGGCGCCTATCCTCTGATAGAGCTCTCTTAACGCCTCTCGTAGTCCACCTACCATGGCTATCTCTATGTGTCTCCTGAACTGTTCGGCCCTGTGGGGGAGACGGGACTCGTAGAGCTCTACTGCGCCCAAGAGTATGAGCGCGCTGGCGAGCCCGTGGGGGAGTTTGAGCCTGGTTGTTAAGGGGTAGCCTAGGCCGTGCCCAATATTTGTGCCAGTGAAGTTGATTGCTACACCTGCAAGCATGCTGGCATAGAGCATCCACTCTCTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACTCAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 1309292-1309013 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007493.1 Thermofilum adornatus 1505 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 1309291 24 100.0 42 ........................ AAAGTGTTTTTTAAGATGAAGATGACCGCATTGAAATCGTGG 1309225 24 100.0 37 ........................ TGTTGTTACGCTTTACACTGACAATTAATGGGATTTG 1309164 24 100.0 40 ........................ GTTGCAAAGACGACAATACGACTGAAATATTTACGCAACA 1309100 24 91.7 39 ......G..C.............. AAAATAAGGACAACGATATCTAAGATATCGGCAAAAAGG 1309037 24 75.0 0 .........C.....G....GGCC | C [1309015] ========== ====== ====== ====== ======================== ========================================== ================== 5 24 93.3 40 TATCAGAAAAGAATGAATTGAAAG # Left flank : CAATCGGCCAAAACATATCCCAAGCCCTCAAAGGAAAAGGAGGAGGAGTAAACGACCTATACCAAGGACACATAACAGAAACCCAAAACATAAAAGAAGCACTAATCCAAGCAGTAAAGAAAACACTCCAACAACAACAATAACCCCCACCAAGCACCCAACAACTTAGCCTTCTTCCCATGCAAGCACCAAGCAACAAAAAAGATAAAGAGAAAAACAGAGATTTCCCCACCGTGATACGGGGTGGGAGGAAAGGGTTCCCTTGGAAATCTCTGTAGAATCGTTTTCCACGGGAAACTTTAACGCTTTACGGGAAGAAGCATCTTTGTAAAATACATTCCTCCCTGGTCCCTCTTCCCAGTTCATATCATTTACCATGCACAATGAGAAAACTAAAGAAATCCTACAATGATAAATGGGAAACACTTGCACAAAAACACTTTCACACAACAGAGAAACAAATAAATAACACCCCAACAAAATAAACCACTGGGAAACAG # Right flank : TTTTACCTTTATGTGCTTGTCTATGGGACTAGATGTAGTGGGGAAAGGAATAGAATGAGTTTTTGGGCTGGGTGCGGGATTTTTCGTGCTTGTTTGCGGGTGTTAAGAATTATATAGTTCTTTGTGGTTTTTCTTTGTGGTGTTTGTATGTTTAGGCTGAATAGGGAGCAGAGGAGGCTCCTGGAACGCATGGGCCTCAACTTTAAGCCCCTTGACGGCGTCCAGGAGGTACAGCTCAAGATGCAGGGCAAGACCATAGTTATCAGGTCTCCGGAAGTCCAGGTAATCGAGATCAAGGGCGGCTCCAGGATATACTACGTGTCGGGCATAGAAGAAGAGGTGGCCGCGGCGCAACAAGAGGTTCCAGAGATATCGCAGGAAGACGTCGAGCTAGTCGTACTCAAGACGGGCGCCAGCCAGGAAGAGGCAAGGAAGGCTCTCATCGAGGCAGGGGGAGACATAGCTAGGGCAATCCTGCTACTCAGCCAGAAAAAGGCCTA # Questionable array : NO Score: 8.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCAGAAAAGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 1320658-1320360 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007493.1 Thermofilum adornatus 1505 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================== ================== 1320657 25 96.0 42 ..........C.............. ATAATTTGGATGTTATTGGGAAGCGGTAGTCCCACATTGTAC 1320590 25 100.0 40 ......................... ATAGGTAACAGTTCCAAAGGTGTTGCGCTTGGAGTCACAT 1320525 25 100.0 41 ......................... TTGGCTCTCCAGCCCATGATGGGGCTCAGGTCATAGATGAC 1320459 25 100.0 50 ......................... ACCGATACGTATTTGCTCAATTGCACAAAGGTTATCCTGCGGTGGTTCTC 1320384 25 92.0 0 ..........CA............. | ========== ====== ====== ====== ========================= ================================================== ================== 5 25 97.6 44 GTATCAGAAAAGAATGAATTGAAAG # Left flank : ACATACACTACACACTCAACACCGCACCACTACAAGGCACAAAAACAATCAGAACAGAAGAAGCAGTACTCACAACAATGGCAATACTAAACCTCCTAGACCAACAAACAACAACCTAGCACAAAAACCACCACACAAATACCCCACGAAACCTCCCTCTATCCCCAAACACTTTACACACTCATACAAAGCTAGCAATATTGAAGAAAAGAGAAAAACAGAGACTTTTCCATCGTGATACGGGGTGGGAGGAAATGGTTCCCCTAAAAATCTCTGTAGAAACGTTTTCCACGGGAAAAGTTTGCAGATTAGGGGAAGTAGACTTTTTGTAAAATAAACACTTCCCTAACTTCTCTTCTCGATCTATATCATTTATAACTCACAATTGGAAAACTAAAACAAAGCTAATGTATTCCATGGAAAATTTTAACATAAATACACTTTCACACAACAGAGAAACAAATAAATAACACCAATACAAAATAAACCACTGGGAAACA # Right flank : ATTATTTCCTTGAAAGTCTTGGGTCCAGGATATTTTGTGGGCGGTTGTTGAGGCTAGTTTTAATTCTGGCAACTAGTGGTGGGAGTACCACTTCGCGGTTACTAGTGGGGAGGACGGCTTGACAAAGGAGCATATAAGGGCTGTTGAGGGGATTGCCTGGAGGCACGGGTTAAAGTATGACTATGTTATTGTTGCCGATGAGAAGAGGTACGTGTATATGAACATAACATTCACTTCCCGCGAGTAGCTTTTCTAGCCTGGTAAACGTGTGGCTCCTACAAGACCACGTGTGCCTTTTCAGGTGCCAGTCTTCTATTATTATTTTTCTACATTTCCGTGTTGTTTTGCAGTCTTCGATGCTTTTTCTGTGTAGCGTTGTTGGTGTTTTTCGTGCCTTGTGTCTGGTGGCGGCGTGTATGCAAAAAGCTTAATAAGTGTTGTTTATTGGTAGCTTTTTGTAGTCATGGTTGGTGATGTATAGTGGCTAAGGGGCATAGACC # Questionable array : NO Score: 8.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:-0.06, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAGAAAAGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 4 1354199-1353946 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007493.1 Thermofilum adornatus 1505 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ====================================================================== ================== 1354198 25 100.0 45 ......................... TGATGTGCCTTTGTTGATGTTGATTCCTCTAAATTCTATGCTCAA 1354128 25 100.0 38 ......................... CTCTCATCTTTAGAACATTTTCCCATTCAGCTTTCCAC 1354065 25 100.0 70 ......................... CGAAAGGAAGACTGTCCTATGCACACTTAACGACGACTTCGATGCAACTCAGAAAGCGCGCGCTCCAATA 1353970 25 80.0 0 .........T......G..C..TG. | ========== ====== ====== ====== ========================= ====================================================================== ================== 4 25 95.0 51 GATGCAACTCAGAAAGAATTGAAAG # Left flank : AGCTATCATGAAACGTTTCACGAAGAGAAAATGGTGGGCCCGCTGGGATTTGAACCCAGGACCACCTCCGCGTCAGGGAGGCATCCTGCCGCTAGACGACGGGCCCTAGACGTCGCAGAATAGTAGAGCTTGATGGGTAATAAATTTTTCTCCCCAAAGCACGAATCATGCATCAAGGATCTACAAGCTTTACACCCAGCACAAAACAGGAAACACGCCCCATCATTAACTAGCTTACATCAATAAAGCATTTCTATTTTGTCAATGTTTTCCCATTAGGAAAACTAAAAGTTGTTTATGAAGTTTCTCGTCGGGAAGGTTATTTTAAAAAGAGATTACGGGAAAAATTCCCGACCCAAAACGGGGTGTTTCGGGAAAGTTCCCTATCGGGAAGTTTCAGAAGTTTCCAACGGGTAAATTTGAGTGCTAAGGCAGTTTTACAGACTTCTTGATAAAATTAAACGTTAAACATATAAACCACACCCGAGTAAAACAATTCG # Right flank : TTTTTGGTATGTTTGTTTTGTGCAGGAGGGACAAGTTTATATAGTGTTTTTTGAAAAGGTATGGAGGCGTTGCTGATGAGTCTGGAGGAGTTGAGGTCTCTTGAGGGGCAGTTGCTGATACCCTTGGAGATGTACTTGGCAGCGGGTATAAGGATTGGCACTAAGGTGAAGAGCAAGTTCATGAAGCCTTTTATCTACAGTGCTAGGCCTGACGGGCTCTACCTGCTCGACGTGAAGAAGACTGACGAGCGTATAAGGATAGCCGCGAAGTTTATCGCGAGGTATGACCCGGCTAAGGTCGTCGTGGTTTCTGGGCGCCAGTATGGTCACAGACCTGTCAAGAAGTTCTGTGGGCTTGTTGGCTGTAAACCTATTCTTGGAAGGGTTCTGCCTGGGACATTCACAAACCCGGCTCTAGCACACTTCACTGAGGCAGACCTCTTGGTCGTCACTGATCCCCGCGTGGACGAGCAGGCCGTTACTGAGGCAGGTCAGATGGG # Questionable array : NO Score: 7.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:-1.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACTCAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 5 1368037-1367278 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007493.1 Thermofilum adornatus 1505 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 1368036 25 100.0 43 ......................... CTTTGTAGAAGGTGGGGGATAAGCATTCTAATCAGAGAAGTCT 1367968 25 100.0 39 ......................... TAAAATTAATCCCAAACCGTAAGTTGTTCGATTGGTTTC 1367904 25 100.0 41 ......................... CAAGGCCGCAAATCTTATCCCTGACGGAATCGTATAGTCGT 1367838 25 96.0 42 .........C............... TGATTGACAATGTGTCGGGCCAAAGTATACGCTCTGACCCTC 1367771 25 92.0 46 .......T.C............... GCGGTGAGGTTGAGTGTCCACGAGTCTGCTGGGTAAGAGGTGTATG 1367700 25 96.0 37 ...A..................... TCATGTCCAGGTATCCATATGCTATGAGCGTCTTCAG 1367638 25 96.0 41 ..........T.............. CGCTTTCGAATGGTATCAACCAAGTCGTCCCATATCTCACT 1367572 25 96.0 46 .........C............... GCTTTCCACTCTTTCCCATCAAAGACATGAATCGTTAGAGTATCCC 1367501 25 100.0 41 ......................... TTCGATGCTCAGTACAGTTAACCTCATCGTACTCCAGCTCA 1367435 25 100.0 41 ......................... AATATCGGGGACGCAACGGCTACCCCCTTCATTGCTACCGG 1367369 25 92.0 42 .........C.....A......... AGAATCCTAATCAAGCCCCTCGCCTCGTATTTGTGCAAGACC 1367302 25 96.0 0 .........C............... | ========== ====== ====== ====== ========================= ============================================== ================== 12 25 97.0 42 GATGCAACTAAGAAAGAATTGAAAG # Left flank : ACACGCGGCAATGGTGGGCCCGCCGGGATTCGAACCCGGGACCTCCGCCGCTCCCAGAGTCGAGCCCCAAACACGGCGCCTTGTGAGGGCGACATCCTAACCGCTAGACGACGGGCCCAAAGAGCCGAAAAATAGAGCCAACCTAGAGTAATAAAGTTTTCTCCCCAAGGGTCGAACAACAAAAACCTAGCCCCAACAAACACCAAACACAGGCACCAAGACCCCTAGAATCTTCTACGACAAACATCATTTCCACTTTGTCAATGTTTTCCCATTAGGAAAACTAAAAGTTATTTATGAAGTTTCTCGTTAGGAAGCCTATTTTAAATTTAGGTTTACGGGAAAAATTCCCGACCCAAAACGGGGTATTCTGGGAAGCTTCCCAGTAGGGAAGTTTCAGAAGCTTCCAACGGGTAAATTTGAGTGCTAGGGCAGTTTTGCAGACTTCTTGATAAAATCAAACGTTAAACATATAAACCCCACCCGAGCAAAACAATTCG # Right flank : CTCGTCCTTTATCTCATCGAGTTAGCGCGCGGGTATCTGAGAGATTTAGCTGGGTGAGCTTGGGTGTCTTTCTATTGGGTTCTGTGACTGGGCTTTATGTGTGTCTTTTGTTTATTGGTTGAGGTGTGTGTAGGAGAGGCGCCTTGAGTTTTCCCTTGCAGAGTGCCGAGATGATTCGCAAAAAATTTTAAAACCTGATGTGTGTTTTGTGTTTCTGGTGGGGCCGGTAGCTCAGCTAGGTAGAGCGATGGCGTGGTGCACGTCGAGGCTTTTAACCCATAGGTCCCGGGTTCAAATCCCGGCCGGCCCGCCAGTTTTTCTCGTTTTTTCTTTGAAAGAAAAGTTTAAAAAACAAGTTTTTGTCAATAGTTTCTAGCTACGCGGTAAGGGTTTGTTATGCCGAAAAAGTTCAATGTTTTGGAACATGAGCTGGTTCCCAAACATGTCTTGCTGTCTGAGGAGGAGGCTCTAAGGATTCTAAGGGCTATGGGCCTGAAGAA # Questionable array : NO Score: 8.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACTAAGAAAGAATTGAAAG # Alternate repeat : GATGCAACTCAGAAAGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 6 1371899-1371491 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007493.1 Thermofilum adornatus 1505 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 1371898 25 100.0 37 ......................... ACAAGACCTCAAGAAGGCCCTAGACGAGGCGAAAGAG 1371836 25 100.0 37 ......................... CGAGCCGCTATACGAATATGGCGTAAACTACAAGAGC 1371774 25 100.0 39 ......................... GAGAAACCTCTTGTCTCCAATCTTCATAACAATAAATCT 1371710 25 100.0 43 ......................... TTCAAGGTGCCGTAATACTTCAAGACGTACTGTACAAGCTTGT 1371642 25 100.0 38 ......................... TCCGCTATTTTAATTCCTTCTCTTAGCAGGGGGTCTCC 1371579 25 100.0 39 ......................... TTGACTACATTGGGGTTACCGGCTCCAAGCGTAATCGTG 1371515 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 7 25 100.0 39 GATGCAACTAAGAAAGAATTGAAAG # Left flank : GGCCAGGCACCTCCCTCTCCTCCGTCAGCTCAAGCCTGATAAGCTTCTCGCCGAATGGTGTATCCACAAGCGAGATATTCGTGACCTTCGCCCTAAACGATATACCAGCCTCACTCATATCCATAGTAAAACCAAGCCCACCTTTAAGTATTTCTAGCACCCACACAGCAAGCCAACCCCACACCAACCAAGAGAAACAGAGACCCACCACAACACATCTAAGAGACGTAGATGCACCAAAGAAGATGCCACATAGAAACTCATAACATGCATACATTTGAAGACTAAAAGTTATTTATGAAGTTTCTCGACGAGAGGATTATTTTAAAAAGAGATTACGGGAAAACGTCCCGACCTTAAACGGGGTGTTTCGGGAAGCCTCCCGTATGGGAAGTTTCAGAAGTTTCCAACGAGTAATTTTGAGTGCTGGGGCAGTTTTGCCGACTTCTTGATAAAATTAAACGTTAAACATATCAACCGCGTCCGAGCAAAACAAATCG # Right flank : GACAAGCTCGCCGTGTATGTTGCCTTTTCTTGTAGTCCGCTAGGCAGCTAAGAAGCGCGCTAGGTGTTGTTCGGCGCAGTGCTTGTTGGAAAGATATTTTATATGTATACATCTATGTATACTTGTGGGTTCAAGGGTTGTCCCGTCAGGCTGGGTGAAGATGAGCTGAAGAAGATAGATGTGCTTGTGAAGTATGGTGTTTTTCGGTCACGGAGCGAGGCCATTAGGGAGCTTGTCCGGCTCGGCGTCAAGCTTGCCTATGTGTCTGAGGTGTTGGAGGCAGTTGAGAGGCTTTTCGAGCTCGAAAAGGTAGAGGGCAGGATACCGGTAGAGCTGGGCGGTGCGACGCGGCAGCTTCTGGAGGAGAGGGAGAGATGAGTTACATCGATACGAGCGTTGTTGTGGCTTCTCTTGATCCTCTTGATCCTCGGCGCGAGTTGGCCCTAGGAGTGCTAGAGAAATTGAGGGACAAAAGGGTGTCGGAGCTTGTGTTGGCGGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACTAAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 7 1408329-1408046 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007493.1 Thermofilum adornatus 1505 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 1408328 25 92.0 36 ......A...A.............. TGTCCTTGATTTGTTCCCTTATTTCGTGTTTTATTT 1408267 25 92.0 40 ......A...A.............. AGCTCAGGGATGTCGTGAACCTCACTGAGCTCGAAGTAGT 1408202 25 100.0 41 ......................... GGGGACCTTCTCGGTCGATAATACAGATACAGAGAGTCTAA 1408136 25 100.0 41 ......................... CTTTTAATCTGTCCAAGCAATGCTAAAATCTTTCGAGTTTT 1408070 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 5 25 96.8 40 GTATCAGAAACGAATGAATTGAAAG # Left flank : CTACGCCTACCTTCAGGGCTACATCTAACCACACATAGAGCTTTGCATAGATGCGGCTCAGAAAGAATTAATGCACCTCTACGTTCCTCCACGTACCCGCTACCCGACAATAAGCCTACACCACACAAAGCTGTACATCCATAACGACCACACAAGCGTTTCGGAAAACCAGGAAAAACCCCTCGCTCCAAAATTAAAAATATACGAAAGTGAAAAACAGAGATTTCTCCATTGTGATACGGGTTGGGAGGAAATGGTTCCCCTGGAAATCTCTGTAGAAACGTTTTCCACGGGAAACTTTAACGCTTTACGGGAAGAAGCCTTTTTGTAAAATACATTCTTCCCTAGACCCTCTTCCCGTTCCATATCATTTACATGCAACAACGAGGAAAAATAAAACAAAATTAATGTACTTAACGAGAAACACTTACACAAAAACACTTTCACCCAACACCAAAACAAATAAATAACACCCCAACAAAATAAACCCCAAGGAAACA # Right flank : GTCAACTTTGCTGGCGGCTGATATGTCTTTTTTGCTGTGCATGCATTTTTTCATGGTACTTTCGGGTTTTCCATTTTTTTCTCATGCAAAGATTTTTATTTCTGCGTAGGTATTTCTCGGGATGACGGTATATTCTCTGGAAGCATCGAACGGGATTGCTGCCCAGGTGGCTAGACATCTTGGAGATGAACTCGTGTTCTTGGAGAAGAAGACTTTTCCCGACGGCGAGGTCTATGTGAGGGTTCCCTCGAAGCCTAGGGGCGTAGCCATACTTGTCTCATCAATGTATCCTAGCCAAGAGAAAAGGTTCTTAGAGCTGTTATTCTCGGTGGAGGCCCTCTCTGCATACGCGGAGGGCAGTATAATTGCTGTTGTGCCGTATCTGGCATTCGCTAGGCAGGATAAGCGTTTCCTGGAAGGGGAGCCGATAAGTGTCAAGGCTGTCTTGAAGTCGCTGGAGGCTCTCGGGCTGTCCGGCCTTGTCACTGTCGACCTCCACC # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAGAAACGAATGAATTGAAAG # Alternate repeat : GTATCAAAAAAGAATGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 8 1420616-1419923 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007493.1 Thermofilum adornatus 1505 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 1420615 25 100.0 43 ......................... ACGAGACCCTGTCGAGCGCGTCGTACGCTTCCTCAGTCCTGCC 1420547 25 100.0 44 ......................... CTAAGGGAACATTCTATGTAACAGCAGACTCTACATACATCTAT 1420478 25 100.0 38 ......................... AGCAATAATCTGGGACGATGCGGGTGTATGGGCCTCGA 1420415 25 100.0 42 ......................... AGGGGTTTTCCTTACCTCCAATACGTATTGCTGGCTTTCGCA 1420348 25 100.0 47 ......................... ATCATTATCATTATCGCGATTGCGGCCTGGATTAGTGATGCGTTGCC 1420276 25 100.0 40 ......................... TGTTGATAATACGGACGCCGTAAACAGACTTGACCTTTAT 1420211 25 100.0 36 ......................... CCCCAGCCCACGCCCAGCCCCCCAGCTCAACACCCC 1420150 25 100.0 37 ......................... TTCTTGTCTCCATACGTGTTCAAGAAAAAAGTTTCTA 1420088 25 100.0 46 ......................... AGATAGTTAAAACAGCGAAGCTTCTACGAGAGATAAGACGCTTCAC 1420017 25 100.0 45 ......................... ATAAAACCAAATCCACATGCAACATATTGCATCTGGAGAAAATAG 1419947 25 84.0 0 ........CC..G..A......... | ========== ====== ====== ====== ========================= =============================================== ================== 11 25 98.5 42 GATGCAACTAAGAAAGAATTGAAAG # Left flank : ACCTTACAAGGATCATCATTGCATTGTTAGATACGTAGAGACATATTTAAAACGAGCGCCCCCAAAACAACAGTCCATAGCCACAGCCTCCCAGGATCCACCACTCAAAAACGAAAAGACACGGCCATCTTAAATCAAAACCCAGCAAGCGGGAAACCTCCCACAGGACATTCAAGTAATTAGCCAGACCCAAACAGGAAAACTCACCCCTCCAGTTCTCCAAGCATACACAAGCCCCCTCATAAACCAAAATAGATTTTTGTCAATATATTCCCTAAAGCCAAACTAAAAGTTGTTTATGAAGTTTCTTGACGAGAAGGTTATTTTAAAAAGAGATTACGGGAAAACATCCCGACCTAAAACGGGGTATTCCGGGAGGCTTCCCGATTGGGAAGTTTCAGAAGTTTCCAACGAGTAAAAATTAGTGCTAGGGCAGTTTTGCCGACTTCTTGGAAGAAAAAGCGTTAAAAATATAAACCCCTCCCGAGCAAAATATTTCG # Right flank : ACGAAGTATCAAAGTTATTTTTGTTTCCCGGAAAAAGGGGAAAGCGGGCGAGTGGAGCGAGAATGACTAGACTTCCTCCATTTCTGTTATAAAGTATTTTCCATCCATGGTGGGTAGCCGTAGCGCAAGCCAAGCCTTGATCTCTAGACCTACCTGCTTGTCAACGATGAGTTCGACTCTTTTGCCTCCTAGAGCGTTCTCTGTAACCTTTGCTTCTACATTGTAGTCCATTAGCCTCTTGCGTAGCTCTTTCCTGTAAAGAGTGTATGGAAAATTAAAGTACATCTTGTCGCCTGTCTCGAGGATAAGTATCTCCTCGTCCATTAAAGGCCAATCCCCAACGGTTTCCACGGAGGCTTTCACCAACACTTTTTCGCCTACATCGCATAAAAGACCAACATTTAAGATAAAGAGCAAAAATAAGTGAACAAAATAAATACTCAAAGTTTACCGGGGGCCAAAACTATAATAATGCACGCATATTTATCCCCGTGTCTCAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACTAAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 9 1523374-1522688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007493.1 Thermofilum adornatus 1505 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================== ================== 1523373 25 100.0 38 ......................... TGCATATATCGGTGGGGCGTTACAGACGCATTCCCCGA 1523310 25 100.0 42 ......................... AAACAGCTGCTTATATAGATCTATACGTTCTACCATAGGTCT 1523243 25 100.0 38 ......................... GTTATTTGAAGATTGGGCGAGTGCCGAGCGGAAGATAG 1523180 25 100.0 40 ......................... TTTTCTGTATTTTTGTTGTATGGACTCGAGGAAAAAGGCG 1523115 25 100.0 41 ......................... TTCTTCAGCGTGCCGCCTTTTTCCGCGGGCACAGTGAACAA 1523049 25 100.0 42 ......................... CCTCATTATAGATACGGATCTTCACATATATGCCCCTTATGT 1522982 25 100.0 40 ......................... CCGCCAGTGTATGTGAAATTCTTAAGTCATACGTATATAC 1522917 25 100.0 41 ......................... AAATAAATTGATGTCTCTTACCGTCTCCCAAGTACCATGAC 1522851 25 100.0 39 ......................... GACAGAGAGTTGGGCATAGTAAGGGCACCCATTTTGCAT 1522787 25 100.0 50 ......................... AAGCTGTAGCCATTCCCATCGAACAATATAATGCTTTGCCATTGATTGTT 1522712 25 88.0 0 .....................GGT. | ========== ====== ====== ====== ========================= ================================================== ================== 11 25 98.9 41 GTATCAGAAACGAATGAATTGAAAG # Left flank : CACCCATCCCTCCTAGACACCGCGTTCATCTCGTTTGTAAAAGGCTACCGTGAAGCCAGAGGAAAAGAAAAAACCACACAAATACTACGGAAAGTAAAAGAAATACGTATGCGCGGCAGATACGTACGTGAAAGAAAACGTTCAACATCTCCAGACAAACCCCAATAGCCCTCTATTTTCCAAAGAGACATAAAATAAAAAATCATGAAAAAGAAAAACAGAGATTTTTCCATCGTGATACGGGGTGGGAGGAAAGGGTTCCCCTAAAAATCTCTGTAGAAATGTTTTCCACGGGAAGCTTTAACGCTTTACGGGAAGAAGCCTTTTTGTAAAATACATTCTTCCCTAGACCCTCTTCCCGATCCATATCATTTACATGCAACAACGAGGAAAAATAAAACAAAATTAATGTACTTAACGAGAAACACTTACACAAAAACACTTTCACACAACACCAAAACAAATAAATAACACCCAACAAAATAAACCACTGGGAAACA # Right flank : GGATTGGTGCGGGGATTGTTTTACATGTGCAGAACAACAAAGAAATTTATTTTGGAGCCCCAATAAGGTGAACCATGAGTTGTAGGCGTGCCTTGTTCCTTGGGCGCTTCCAGCCCTTCCATAACGGTCATCTGGAGGCGTTAAAGTGGATTCTTGAGAGAGAGCCCGAGGTGGTTCTGGCTATTGGTAGTGCCCAGTATTCGCATAGTTTCAGGAACCCGTTTACGGTTGGGGAGAGGCTGGAAATGATTCAGGCAGTCCTGAGAGCTGAAAATCTTGCTGACAGGGTTATGGTCAGCGTGGTCCCCGACACTGACAACGAGCATTCTCTCTGGGTGAGGCTTGTGGTTAGCTGGTCTCCCTGCTTCGACAAGGTGTACACGAATGATCCCTTGTCGCAGTTGCTTTTTAGGGAAGAGGGTTTCCAGGTTGAGGGGATACCGTTTCACGAAAGGGAGGTGCTCGAGGGTACACGTATCAGGAAGCTGATGGCCGAGGGT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAGAAACGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 10 1577352-1574746 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007493.1 Thermofilum adornatus 1505 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================================== ================== 1577351 25 100.0 43 ......................... CATAGTTATCAACAATGTTTCACCAGCCCTATAAAAAACCTAT 1577283 25 100.0 38 ......................... CTATTCGAGCCATGGTCGAGCGGTGAGAGGAAAATAGA 1577220 25 100.0 38 ......................... GCGCAGTGTGGACAAACGGCGCAACAGCACAGACTGTA 1577157 25 100.0 42 ......................... ATTTTCCGCAGTATCTCGGCAGTATTCACGTCAATGATGTAG 1577090 25 100.0 42 ......................... TCATGGTATGTAGAGATTTCCCAATACATAAATATAAGTCAT 1577023 25 100.0 38 ......................... TGACACTATGCTAAAGATTACAGAAGGCTTAGACATCA 1576960 25 100.0 41 ......................... CTGATTTTGGACCCTTTTACGGGACCCTGTTTTACAATTGT 1576894 25 100.0 42 ......................... AGCATTGCAGAAGCCGCAGAAGCCGCAGGATACAGCGAGAAG 1576827 25 100.0 41 ......................... ATATCTAGCGAATATTCTATCGCATCACACACTATTTCTAT 1576761 25 100.0 41 ......................... CCAACAGGTAGACAGCGGTAACTACCCCCTTGATTGTCTTT 1576695 25 100.0 44 ......................... ATTTGCAGGTAGTCAATACGGTCATGCAGTGATAGTTAAGAGTG 1576626 25 100.0 41 ......................... AACCACTGCCCGACACAGATACAGTTCACAAGCATCAACTA 1576560 25 100.0 39 ......................... AGCAAAACAGATAGTCACGCTCATGCCACGCAACAAGGC 1576496 25 100.0 38 ......................... AGTCCTGGTTCTCGAAGTCTATCGCCCACTCCTCTTCC 1576433 25 100.0 39 ......................... AGAAAACGTGGCTTTTAGTCCAGTTCCCGCGCCAGCGAT 1576369 25 100.0 47 ......................... ATTAATATATTCTACGAGCTTTTCTATTGCTTGTTCTACGCCCTCAG 1576297 25 100.0 37 ......................... CTTTGTACTCGGTCTTATACACGGCTTCGAGGAGACA 1576235 25 100.0 40 ......................... TTAAGGCGTCCTTATAGGGTTCAAGATTTATCCCCGCTTT 1576170 25 100.0 38 ......................... TATTACTCTCTCAACGCGATATTGGTTTACCAAGTCAT 1576107 25 100.0 40 ......................... ATTGATTGACGGAAAAGCATATCCAAAAATCAAAGCCCGA 1576042 25 100.0 46 ......................... TTGACATCACGAGAAACGACTACTTTGACATCCCCGATATTGTCTT 1575971 25 100.0 43 ......................... GTAGCCAGTCTTTGACACTTGTCCAAGCAGGCTAGATATTCTC 1575903 25 100.0 41 ......................... GCTGTAGCGCCTTCTGTGCCTCTGCCTGGGCTTTGGCCACG 1575837 25 100.0 38 ......................... GCCAGGGCTAGCCAGCCGTTCGTGGCCTTCGCCAGCGC 1575774 25 100.0 40 ......................... TGCTAAGGTCAAGGCACTCTTGAACTACGTAATTGCAATG 1575709 25 100.0 41 ......................... TTAATTACTAGTATTAGTATTACTATTAGTATTAGTATTAA 1575643 25 100.0 40 ......................... ACACGTTAAGCGTACCTGAACCGCTTATGTTGAACAATGT 1575578 25 100.0 43 ......................... ATATCCCGAGCTGAAAAACTTAGCCTGCAAAATTGCAGAGGAG 1575510 25 100.0 41 ......................... ATAGTCCATGTCTTGGAGAACCAATTGTACCCGGTGGAGCT 1575444 25 100.0 44 ......................... CCATACCCACCACAGATGCTAACAGGGTGGAATTTACAGCCATT 1575375 25 100.0 39 ......................... GCATATATCGGTGGTGCATCGCAGACGCATTCTCCGAAA 1575311 25 100.0 42 ......................... TCTAGATAGTTCAGGGCGTTCCTCAAATGTTCCTTTGCTACT 1575244 25 100.0 40 ......................... TAGTAGTTTGGGGATTACTGATTGCAAGCTGGCTGAGCAA 1575179 25 100.0 42 ......................... AAAGGGTGACAATGGCAGGTAACTTCGTAGGTTCTATTCGGA 1575112 25 100.0 38 ......................... ATGAGCCACGACTGAACGCCTATGTCGTAGTGGCAACG 1575049 25 100.0 43 ......................... GCGCGCTTTTTCTACTGGCCGCACTAGGAGCATTTTTGCGCCC 1574981 25 100.0 51 ......................... ACGAGTGATTCTTTTTGTTGTTCATCTAATATTAGCGGGAGCTTGCTGAGG 1574905 25 100.0 43 ......................... ATTGCTCATGGTTGTCCTCTTACCAACTTTGCTTAATGTCTTT 1574837 25 100.0 41 ......................... TTTACGTCCCCAACCCCTTCCACGCCCCTGGGGGTGTCACT 1574771 25 96.0 0 ...T..................... | A [1574748] ========== ====== ====== ====== ========================= =================================================== ================== 40 25 99.9 41 GATGCAACTCAGAAAGAATTGAAGG # Left flank : CCCACCCCTAGCCATCTGCGTCCCCCCTACCCACGCCGAGCATACTACTCTTGGGGGTCATCCCACGTGCTCGGCGTGTACACTTGGCCCCGAGGGGATGCATGTTGCCCAGGGGGCCCGAGACGAGTGCCGTTGGTCATGCGCCCACGTGTGCGGGCTCGAGCGGCCAAACTCAAAGGAAAGTTACCGAATACATAAAACCCGGAAAAAGAGAAAATCTTCACTGCGACCGGCTTTTATCGCAAATGTATGCCGCTTTTTGTCAATGTTTTCCTTAAGGGAAAACTAAAAGTTGTTTATGAAGTTTCTCATCGGGAAGGTTATTTTAAAAAGAGATTACGGGAAAACTTCCCGTCTTAAAACGGGGCGTTTCGGGAAGCTTCCCTACAGGGAGGTTTCAGAAGTTTCTAATGTGTAATTTTGAGTGCTAGGGCAGTTTTGCAGACTTCTTGAAGGAAAAAGCGTTAAACATATAAACCACTCCTGGGTAAAACCTTTCG # Right flank : TGAAGACGCAGGGCTGTTTTTGAGTGCTGTGAATTGGCTTGTAATAATTTTGTTATGTTTGTGTATAACTTTGTTATTTTTGTTTTTCTCTGTTTAAAATACATGTAATAACATTGTTATCATAAATAATAACGATATTATGCTATGTGATAACTTTGTTTTTATGGCTTTTCTGCTTTTTGGTTCTTGGATTATGTAGTTTTGTTCTTGAGTCGCTTTTCTGGGTCTAGTTTGTTTGGGCAATGTGTAGCGGGATAAAAGACGAATAAGTGGTGTGGCGAAGTATGTTTTAGGGGATGGTTCCAGGAGAGGATGGGTTGAAAATTGTGTGGGTGGCTGGTGGGTATGCGGATTAATGGCACTGTTGGGGCTGTTTTTTAGTGAGTTTTGTAACGCGTTTATCAAAGGGTCATGGTTTGGTGGTTCTCTAATATCAACGTGAATTTTCGATCATTACGAGTCCACTGAGCTACAATGGAAGATAATGTCGTGGGTGTCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACTCAGAAAGAATTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //