Array 1 433375-433767 **** Predicted by CRISPRDetect 2.4 ***
>NZ_SEWL01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 163_15 NODE_3_length_433814_cov_33.0989_ID_5, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
433375 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA
433436 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA
433497 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC
433558 29 100.0 30 ............................. TTTGATACGTAGTATCATTACGCCTCCTAG
433617 29 100.0 32 ............................. GCGAAGGTCAATAAAAATGGTGTGGCTTTACC
433678 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
433739 29 100.0 0 ............................. |
========== ====== ====== ====== ============================= ================================ ==================
7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT
# Right flank : AAAAAACAGAGAACGGCAAGCGGCACCTCAAGTGTTCCCCGCGCCAG
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.51,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 1 46-683 **** Predicted by CRISPRDetect 2.4 ***
>NZ_SEWL01000022.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 163_15 NODE_22_length_71183_cov_31.001_ID_43, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
46 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
107 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
168 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT
229 29 100.0 32 ............................. ATGCCGGAACGCTGATGGCGTTTGACATGAGC
290 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
351 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC
412 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
473 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA
534 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
595 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT
656 28 82.8 0 ...............A.AA....-.G... |
========== ====== ====== ====== ============================= ================================ ==================
11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : AGCGGGATAACCGCGTCAGCGCGGTATTGAGGCCGGGGACCGCCCG
# Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG
# Questionable array : NO Score: 6.16
# Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [21.7-63.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0.27 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 16941-18605 **** Predicted by CRISPRDetect 2.4 ***
>NZ_SEWL01000022.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 163_15 NODE_22_length_71183_cov_31.001_ID_43, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ========================================================================== ==================
16941 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT
17002 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG
17063 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT
17124 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA
17191 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT
17252 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC
17313 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT
17374 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA
17435 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG
17496 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA
17557 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA
17618 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC
17679 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC
17740 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
17801 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT
17862 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG G [17884]
17924 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG
17985 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC
18046 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC
18149 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
18210 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA
18271 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA
18332 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC
18393 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
18454 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
18515 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
18576 29 96.6 0 A............................ | A [18602]
========== ====== ====== ====== ============================= ========================================================================== ==================
27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG
# Questionable array : NO Score: 6.13
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//