Array 1 8275-9568 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPB01000016.1 Helicobacter pullorum strain NAP6W24 contig016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8275 36 88.9 29 ....A....GG........................G TTTCATCATCAATATTTTCAACACTAGAA G,CT,TC [8279,8283,8290] 8345 36 100.0 30 .................................... AAAATCCTTTAATAGATATTAACAGATATC 8411 36 100.0 30 .................................... CTCTATTGGGAATCCAAAATAGTCTGCTAA 8477 36 100.0 30 .................................... CAATAGTGTTTGTATTATTAAGTTCTTGAA 8543 36 100.0 30 .................................... TTTGAGAAAGCGACCAAGATAGCGTTTATG 8609 36 100.0 30 .................................... TTCCTGGAAAATGGGAATTGTTGATGTCCA 8675 36 100.0 30 .................................... ATATGTGTTGTCAGAATCAGAATATTGATA 8741 36 100.0 30 .................................... ATGATAGCGATATTCCTGATATCGGTCACT 8807 36 100.0 30 .................................... CATGATTCCAAAAAATGGATTATCATATTT 8873 36 100.0 30 .................................... TTAGTTTGAGTAGCATAAAGCTCTTGAGTC 8939 36 100.0 30 .................................... AGCTCTTCCAATGTTGTTCATAGCTTGAGA 9005 36 100.0 30 .................................... TGCATAAAGTTCCTGCGTCAAAACTTCCTG 9071 36 100.0 30 .................................... TGTTTTTTAAAAAACGACCTAAATATCGCT 9137 36 100.0 30 .................................... GGACGCTGGGCAATTAATCCCCTTTTTGTT 9203 36 100.0 30 .................................... GAGTGGTCTTTGAGAATATCACTTGAGAGT 9269 36 100.0 30 .................................... TTGATTTATTGTAATACCATTTGCTTTAAA 9335 36 100.0 30 .................................... AGTGATTTGTTTGAGAGATTAACTAAGAAA 9401 36 100.0 30 .................................... CAATAGTGTTTGTATTATTAAGTTCTTGAA 9467 36 100.0 30 .................................... ATGGTAACGATATTCTTGATATCTGTCAGA 9533 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.4 30 GTTTTAGTCCCTTTTTAAATCTTTCTATGCTAAAAT # Left flank : ACATTTGTAGCAAACACACTTCCATTAGGTGCCAAGTCTAATTCAAAAGTATGAGGCTGTTCTCCATTAAAATACCTGTCTAACCATATTTTAGTTTGCAATAAGATAGGTTCATCGTCTTTTTCTTGTGTAGATTCCCTAAGATTTCCTAAATAATATTTCTGCCCTTCTATCCAAGAACCTATAAGCTTATTATCTTTACTTGCTAAAAGTATCGTGCCAATAGGACTTTGGTAAAAAGTAGTATATACCATGATTTTCCCTTCAATTCTTAAAATATTTGTTTGAATCTTGTAGTGTGTTATCCTTGATTTTTTAGTCTAAATTACGAAAAACCCCAAAAGATAAGACAATCTAAAACTCTTAATTTTTCACCACACATTAGCTTATCGCACAAATCCAAAATATAAATATAGCAAACCTATCTTATAGTAATCAAAAACTACATCATTTAAAATATTTTAAAAAACCTAAATTATATCAAAAACAATAAAGTAATG # Right flank : ATTATTGTAGGTTATGAAGTGTATATCAAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATCTTTCTATGCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 719-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPB01000108.1 Helicobacter pullorum strain NAP6W24 contig108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 718 36 100.0 30 .................................... ATGACGCCTAGCAATGCTGTTGTTTATGTT 652 36 100.0 30 .................................... ATTTATATGAATCGTGCGTCCAATGGTGCA 586 36 100.0 30 .................................... AGAGTTTTTTGAGAATTGTGTTAAGACCGC 520 36 100.0 30 .................................... GAATTCGTCCTTACGCTTCCTTTTTATACT 454 36 100.0 30 .................................... AGTTCAATCAGCTAGTTCAATTTTCGCTGA 388 36 100.0 29 .................................... AATCTATGATGGGATTATAATCTTTTGGG 323 36 100.0 30 .................................... GACATTATGGTTCCCATTTTAGGTGGTGCA 257 36 100.0 30 .................................... TTGTTCCTAGTGGTTATCGCTTACTAAGAA 191 36 100.0 30 .................................... TGTCCCAGTTGGAACTTATAAATATATAGA 125 36 100.0 30 .................................... TTTGATATACACTTCATAACCTACAATAAT 59 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Left flank : GGACTAAAACTCAATGGCTTTTCGTTGGTATAAGCGCAG # Right flank : CTCTGACAGATATCAAGAATATCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 9341-9905 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPB01000030.1 Helicobacter pullorum strain NAP6W24 contig030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 9341 36 100.0 30 .................................... CGTCCTTTCTCTTCCTTTTTATACTCCTTA 9407 36 100.0 30 .................................... GGAATTGCTTCTGTTGCACAACGCCCAATT 9473 36 100.0 31 .................................... GGGATACACCGCGAGCGGTAAGCTTGTCTTA 9540 36 100.0 30 .................................... ATTGTCTTGTCGGTAATATTCCAGTTTCTT 9606 36 100.0 30 .................................... CCTATAAAAGAACAAGGAATTCGCGTGTCT 9672 36 100.0 30 .................................... ATCCCATTAGAAAGGATGCTGCTGACATTG 9738 36 100.0 30 .................................... TCAATGGCTTTTCGTTGGTATAAGCGCAGA 9804 36 100.0 30 .................................... ATGACGCCTAGCAATGCTGTTGTTTATGTT 9870 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 100.0 30 ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Left flank : AGGGGGAGTATCCGCTGTCTTATCATCACAGAGAAGCAGTTTGATTCTATGGAGATTTTGCTAGGTGGGGTGGGATTCAATGAGATGATGAATGAGCCAAGAAATCTCGTGCTTTTTGGATTTGATGAGAAAAAGGGAGAGTATGTGTATGCGGATAATGATAAAGATAGCGATGAAGAGAAGTTGTTGCAAACAAAATCAAAGAAAACAAGAAATATACAAGGAAGTTTATTTGAGTTTTGAAGATAGAATGGTGCGCTACTTAGGATAATATGTGTAGAATAGTAACAATATAGGGAATATAAAAAACAATAAAATGTGAAAAGTATTATGTAATATAAAGTAAAAAAGTCTTGGCAAAAAGGGATTTTTGGAGGTTTTTAATCTCACACCCTGCACCTTTACTCCTAGTACTGCCAAGAAATACTAGGTAGGTTTATTTTAGTCCCTTTTTAAATCTTCTTTTGCTATTGTAGCATAAAATCCCAATTTTTTGGTCT # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //