Array 1 4102-3870 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPST01000061.1 Thermoactinomyces daqus strain H-18 H_18_contig_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4101 30 100.0 37 .............................. ATTGCTCCAGGCGACGGAAAATTTCCTCAGTAAAATC 4034 30 100.0 36 .............................. TAAACTCCAACTTGAAGGTAATCATCAACAGCAAGA 3968 30 100.0 38 .............................. GGATGGAGCCGATCTCATGAAATCCCTTTTCCGTGTAT 3900 30 80.0 0 ...................CC.GG...T.T | A [3882] ========== ====== ====== ====== ============================== ====================================== ================== 4 30 95.0 37 GTTTAGTTGTATCCATATTGGAATTGAAAC # Left flank : CCGTGGCTACATTGATGACCTCAAGAAGACCGAGAACAATCCGACATCGAATATGGGGATTTAGGGTCACTTCATGATCCGATTTGATCACCAGTTGTGTACCATCCCATCCGGAGACCAATCAAAATCATAAACGCTCCGATATGGGATGTTCTTCACATGATCGATCACATTATGAATCATATGAAATATGATTTGATCGATGATATCAAGGATGAAAGTTAAATCTCTGATTTTCTTTGTCTCGTCTGTGTTGCTACCATTTCTGACAAATCCAAAGTGACTCGCATTTTCAAACCTTCCATCATGATTGGTACGGCTGTCCTGCCAAAATCAAGCGACAGGTTTTAATAGAGAAGTGATTGGGGAACATCAATAAAAATCCGAGCACATCCAAGAGTCTGTGAACCTCCCGGGGATTTTGCAGGATTGGAGGTTTACAGACTGATTTTGTTTTTTATAAACTGAAAATAATTGATATTATCGATATTCACACACGG # Right flank : GTGGTGATTTAGTGCGGAGAAAAACGATTGAGCGAGTTTTTGCCGATATGAAAGAGATGCATGGAATGCGTTGGACGACGCTTCGTAGGAAGCGTCGTATTCAGATGTACAGTCTGACTCCTACCAGTAATATACAATGGTAGGAGTCATCAGCTCCTAACAATATTTATTCTGCTCGGCAAACAATTTTCCAAGCTCTCTTAATAACGCTGGTGAATCGAGTCGTCCCATATGAACTTCGATAAACACCAGTTTATTTGCTTTTTCAGCTTTAGAGAGCACTTCTTCCAGTTCTTCTTCAGTTTTAATTTGAAAGCTGATGCTATTCCCATTTAGATCCAGCACATCCGGTATGCGTCTATAATTCCACCTGTTTATATCGTTATACCTCTGCTCGGCACCATGAATCATTCGTTCAACGGTGTAACCGTCATTATTGATCAAGAAAATAATCGGTTTCAGGTCATGAAGAAGGATCGTAGACAATTCTTGAGCAGTAA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGTATCCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 36208-36025 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPST01000019.1 Thermoactinomyces daqus strain H-18 H_18_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 36207 37 100.0 36 ..................................... AACTTTTTGCCGCTGGAGGCTTTATCCCAAAGCTCG 36134 37 100.0 36 ..................................... GCTGTTGATTGGCAAAAACCGGTAGAATGAGAGCGG 36061 37 97.3 0 ......................T.............. | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 99.1 36 GCATCAATGAATACACCTCTAGCAAGAGGATTGAAAC # Left flank : GCCGTAAAAAACGCCCACCCGCAGGCGCAAAACCAGGCGCGGCTGATCCTCCCTTCCAATAACGACAGCGCGGTGGCGCATTTGATTCAAAATCATTTATTGCCAACACTTTCCCAAACATCAAACTGAATGGAAAAGGAGACCTGTTGCCGGGTCTCCTTTAGACTTGTATCCGGATTGTTCTCACCTGGATCAAGCGGAACCGGTTATCTCAAAATAAAAAGTGAAAAATTCTGCCCTTTTCTGTTTTTTTGTTTTCTCATTTGCTATATTAGCAGTAAGGTGCTGCAAGAAGATCCCTGCCATCATTTGCGAACACCGGAAGCTTCGAAACAGATCCAAGGGATGTTCGGAAACGCCAAAGGTCGCAAAAACAAAGGGGAATCAGACTTTTTGAATGGAGAAGATCCTGTCAAAACGGTTCGAAACCCGGATGAATCGGAAAGGTGTTCGGAAAATCACGTACAAACTCAATAATCAGAAAGGATCTCATGAACGCC # Right flank : ATCTTGCGGAAACGGCCGTGATCGGGGCTCGTTGAATCAATTTACGTATGAGCAAACAATCCATATGCTCTGTCGATTTATTTTCACACCCCGGATGAAAACGAATTTAAGATGATCACAACTTTATGATCAGACTTCAAGGGGGGGGATTTACCAGCCACGGCATTGGATGAATGGTTTATCAACAAGAATGAATTTTCTATAATTTTCATCAATATTCCGTACACGTCACTACTGGTCTGCAAGAGGGGAATATTTCCGCCTGGTCGATCGGGCGAATTTCCCGGCGGAAAATTTAAGCGATCCTCTTTGGATTCCCATTCACAATTAAATTTTAAACACAAGCAAACTCGTATCAAAAATCGCTTCCATCTCATAAATTTCATATTGGCTTAATTGCAGCAATGAACACGGTTTCAGCCTGAACCGCTGATTATATACACTAAACATGATCTCCCCGCGAATCAAAAAAATAATTGCATCAGAGTTTAAATAATGAC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCAATGAATACACCTCTAGCAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 7113-6933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPST01000081.1 Thermoactinomyces daqus strain H-18 H_18_contig_81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 7112 37 100.0 35 ..................................... CTTTCCATTCTCCATTTTCCTTTACTAGCTTTATT 7040 37 100.0 34 ..................................... ACTACCCTTCCATCCTTCTCCTTCAAATCTCCCC 6969 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 35 GAATCAACAAGTACACCTCCGGTAGGAGGATTGAAAC # Left flank : ATTACAGGAATGCTCCTTTAGTATAGACAGTGTGAATCTCTTGTATTTCTTCTAATACAGGTGCCGGTTGTCCTGCTGCTGTCATATATATCAATCCTGGAGTATACATGGGCGGTTCGTCTCACTAACTAGTTACCAGGCTGTATTGCAAACAACAAAATGGATTACTTATAATTGAAGATAAAATATGAAAAATTTTCGCCGGCATTTGCGAACACCGGAAGCTTCGAAAAAGACCCAGGGGGTGTTCGGAAACGCCAAAGCCCGCATAAGATAAGAGGGAACACTACTTTTTGGATGGAGGTTATCCAATCAATAAAGCCCGAAACTTGTCCAAATCGGGGAGATGTTCGGAAAATCGCATATAAACTCAATAAAATCAAAGGGTACAGTGAACGC # Right flank : GTGTCGAGAATCGGCTGACGTTGCTTCTGGTAACACCGAATCAATAAATAAACTTCAGGAGACCATCGTACTGCGTTAGTCACTAAAACAAAAAAGTCTGTCAACTTCTAGCACCGTAAAAACCCGGGGGTTGACAGACTTTTGTTCAGTTTGTTTCCGATACGAAGGGAAAATGGCTCCATATTTGAGAATTGTTGCCTGCCTTTGCCAAAAAAAGAGGCGTCCATCGCTTCTCTAACCTAGGGCATATAAGTCGAAAAATCCAAAAACATTTCTGTTTATTGGAAAGAACCGAGTCGCCGGATGCTGGCTCTGCCTCTGTTGATTTAAGCATTAAATTCCTTCCACAATCCGTTTTGCCCGTTGATGCGCCTCGTACAACAGTCTCTCTTCGTCAATCGTCAACAGTTCTCTGTTTTTCATCAGGATCTTTCCATTCACAATCGTTGTCACCACATCTTGACCGAAAGCGGAATATACCAGCAGCGAGACCAAATCAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCAACAAGTACACCTCCGGTAGGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //