Array 1 15205-13254 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAKS01000135.1 Yersinia pseudotuberculosis strain LFB2015M0M69/I85 NODE_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15204 28 100.0 32 ............................ TGCAAAGCCTCAAGCAATTCCGGTGAGGCTGC 15144 28 100.0 32 ............................ ATCTTCACTGCAGCTATAACGTATCCGTAGCA 15084 28 100.0 32 ............................ GGTCGACCAGCGCCGGGGACGTTTGGCGGAAG 15024 28 100.0 32 ............................ TGCGCCGGAATGGATAGGAATAACTCCTTAAC 14964 28 100.0 32 ............................ AGAGTCAGTTGTTAACTCACTGAATGGTGATG 14904 28 100.0 32 ............................ GCCAATAAGTGATAGCGCTCCCCTTGCCAATC 14844 28 100.0 32 ............................ TTACCGGCATCATACCGGGCATGTATTTCATG 14784 28 100.0 32 ............................ AAGCGTTAGCTTCCGGGGTTCTTCGCGGGGAA 14724 28 100.0 32 ............................ GTTAGAGCAATTACAAAGGCATTAATTATTGG 14664 28 100.0 32 ............................ TGTTCACCGTGACGCTTGGTAAGCCAGTCGAT 14604 28 100.0 32 ............................ AGTTCCATATCAACGGATTCACATAACGCTTC 14544 28 96.4 32 A........................... AGAATATCCTTACGGTTGGTGTTGATGTGCCA 14484 28 100.0 32 ............................ ATGAAGTCAACTGACCGACAAAGCCGGGCGGG 14424 28 100.0 33 ............................ ACTTGCAGCGCATGAAGTATGCAAGAGAATTAA 14363 28 100.0 32 ............................ GCATCTTGCAGCGGGAGGAGGGGAAGAAGAGT 14303 28 100.0 32 ............................ ATAGCCACCACTTAATTATCATCATCAATCAA 14243 28 100.0 32 ............................ TATCGTTGATGATATTGTGATGAACGGTGGTT 14183 28 100.0 33 ............................ GCGATAATATTTTCATTAAGTTTCGCTATCCGG 14122 28 100.0 32 ............................ ATCAACCACACCATCGGCTGTGTGATGCTTAA 14062 28 100.0 33 ............................ ATTATCTGAGTAGATATCTTTAGTAAGAATACA 14001 28 100.0 32 ............................ ATATGAGAAACGTTTCACAAGTGAAATAGCTA 13941 28 100.0 32 ............................ CTTGGAATACAGATTATTGCTGGTACTGTCAA 13881 28 100.0 32 ............................ TATGGTAAAGCCAACTTATCCAGACATACCAC 13821 28 100.0 32 ............................ TATTTCGGAGGTGCTAAATAATGGCTCGTTAT 13761 28 100.0 32 ............................ ATATTCATCCAGCGGGACCGCTGATGTTTATT 13701 28 100.0 32 ............................ GGATTGATCGGGTGATTCTTCATGCGGCATCT 13641 28 100.0 32 ............................ TACACCACCCCACAGTTGAACTCTCCGGAGAT 13581 28 100.0 32 ............................ ATATAGAGAGTTTAAAAACAGTTTACCTAACG 13521 28 100.0 32 ............................ TTGCGGTAATCGCTCCACGATGGGATTTTGAA 13461 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 13401 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 13341 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 13281 27 85.7 0 ...................A-.A.T... | C [13257] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15939-16087 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAKS01000172.1 Yersinia pseudotuberculosis strain LFB2015M0M69/I85 NODE_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15939 28 100.0 33 ............................ ACTTTCGGAGACAGTGATTCTACGACCGATGCA 16000 28 100.0 32 ............................ AAGCCAACGACGGATCTCTTCAACGGCAATGC 16060 28 89.3 0 ...........T............T.G. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCCTTTAAACACCAGACAGCACAACAACCCAAGAGGTTAGTTACTGTCCGCGGACGGATAAGTCACAGTTTCCCCATTCAGGTTATATTTTATCAGGGATAATAGGTGAAATAGGGGGGAGGGGCTAATGGTAAAAAGCCTCTTATTGATCCAATATATAATAATTCAGATAAAACGCGCATCTATTAGGATATTTCAGACATTTATACAGGATATTTCTGATCTCCATCACAGGGGGACCTCATTAGATCACGTCAATATTCTTTTTTTAATTTACCTAATAACCTCATTTACTTAATAACCCAATTGACCTGAACCCTAAAAACGAAGCTATGGCAGAGTCATGCCCTGAGAGCGTTTCAGGGCGTTGGTACAGCAGATGATAAAGATCACAATAATAACTCATGGGGATTCTTAGCCTATTCACATCAGGGGCGTCATTTTTACCCTTTGGCGAAAGAGTTATTTTATAAACAGTTTGTTACCCGTATTATCTTACT # Right flank : AGGGTTACTGTCTGTGCGCCAGCGCGGCCCCAGCCTGCGCCTCCTGCTGGTAGGCCAACGCCACGACCAGCGACTGCACTAGACAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCGGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTAAGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCTGTTCACCTGCTCGCGCAACATCCCCCCGAGGCCATGAAGTTGCACTGGGCGACATTCTAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGCAGTTCCACCGCACGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGCTGTAGTGCC # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6552-8082 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAKS01000190.1 Yersinia pseudotuberculosis strain LFB2015M0M69/I85 NODE_87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6552 28 100.0 32 ............................ CTGTGATAGCAATCCGTTGACTATAACGTCAG 6612 28 100.0 32 ............................ AAGGGTTCATTGGCAGAAGCACTTGCATTACA 6672 28 100.0 32 ............................ CAAGAAAAGACACGCCAAATATCTGAGCAGTA 6732 28 100.0 32 ............................ ACAGCCAATCTACTTCCGTTCTCTGAGATTGA 6792 28 100.0 32 ............................ AGACGAAGAGCCACGCCAACGTAAACGTAAGA 6852 28 100.0 32 ............................ TATCTCAGATGGCGAGCCTGTATCGCACTCAT 6912 28 100.0 32 ............................ TAATCATGGATGAGGTTGGAATAAAACTATCA 6972 28 100.0 32 ............................ AAGTAAGGCACAGAAGGTTGTCACAATGACAA 7032 28 100.0 32 ............................ AACACTAAGGGATTATTACCAGATACAGGTGA 7092 28 100.0 32 ............................ AAATTATCTATAAACATAAACTGACTTTGAAT 7152 28 100.0 32 ............................ AATTCGGTATCGGTAAATTCATCAAGTATTTC 7212 28 100.0 32 ............................ TACAGCGGGCCAACTATTAGTAGATAGAGTTA 7272 28 100.0 32 ............................ CCAGATAAAAACCTGATCACCCTCATCATCAT 7332 28 100.0 32 ............................ ACTTTAAAGTCGAGAATGTTTTCCCCGCTCCT 7392 28 100.0 32 ............................ CATTGAAATAATGGTTACTGGTAACGGACAAG 7452 28 100.0 32 ............................ AGAATAATCAACGCCATTAGGGTTTAAAGGTA 7512 28 100.0 32 ............................ GCATTGCTTCAGATGCCGGTCAGGTTGTACGA 7572 28 100.0 32 ............................ CCCGTATTTTTGAGTGCCAGCTGCTTCCTGCA 7632 28 100.0 32 ............................ ATTTATCGCCTGACTTGACAATCATGACTTAA 7692 28 100.0 34 ............................ CCGATGGTCCGGCAATACCGATAACCACTTTTGA 7754 28 100.0 32 ............................ AACAACGCCGCAGACGCAACCAGTGCCAATAC 7814 28 100.0 32 ............................ CAAATGAGATTAAAGCATCAGTGCAGTACATG 7874 28 100.0 33 ............................ CCTGCCTGAATAGGGTGCATCAGCAAACCAAAT 7935 28 100.0 32 ............................ TCAAAAACCTGATGGCAGTGGCCCGGCAATAT 7995 28 100.0 32 ............................ TCAGGCTGGCGGCGAAATCACCACCTTTGCAT 8055 27 89.3 0 .....................CC.-... | T [8081] ========== ====== ====== ====== ============================ ================================== ================== 26 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //