Array 1 1-228 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRCH01000002.1 Halomarina oriensis strain SPP-AMP-1 SPP-M1-1.IonXpress_2017_trimmed_contig_2, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1 29 100.0 36 ............................. GAGTCATCGGCTAGTCGATCGACTCCACGAAGACGG 66 29 100.0 38 ............................. GTCCGTCTGGCTGGCAAACAATTGATGTCTATGATCCG 133 29 100.0 38 ............................. GGCAAACTCGACTGCATAGGACAGCCCGACTCATCGTG 200 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 38 GTTACAGCAGGACCCTAGACGGGTTGAAG # Left flank : | # Right flank : GCCGACAGAACAACACCACCCGCCGGACGGTGTCTCGGGAGTTACAGCAGGCCAATTAGGCCGTGCTGCCTCACAGCTAGTTGATTAGGTAGAGGAGGTAATAGGCATCGTTTCTAATCATGAAATGAAAAGAACACTTTCAGCAGCCCGTGAGCGACTGGAAGCGGACATGTACACGGTTCCTCAACGAAACACCTTGGAAGACAGCTTATCGTCGATTCAAGCGGAGGACTACAGTTGGATGTCGAACCCAGACAACGAGATCCAAAACTCACCAGAATGGCAAACAATTATTCAAATGTCGAAAAAGGGATGAACAAGTCCGGAGAAAGTGAAGTAAAGGCAGTACCAAATACCAAAATAATGACTAATACTACGAACTACCCAAGGATGTTGGACGCTATGCAGCAGAGAAATGAAACCGACGGTTATGGCTATGAGTACTTGGTCAACGCTGGGTACTTTGAAGATCCTACGTCGGACACAGTAACATACGACTC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCAGGACCCTAGACGGGTTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 141175-141013 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRCH01000002.1 Halomarina oriensis strain SPP-AMP-1 SPP-M1-1.IonXpress_2017_trimmed_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 141174 30 100.0 37 .............................. GTGTACTCAAGACTCGTGAGTTGCGTGACGAGACGGC 141107 30 100.0 35 .............................. ACAGGTAATGGCGCTGGATCGCCGCTTTCGGAAGT 141042 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 36 GTTACAGACGGACCCTTGTGGGGTCGAAGC # Left flank : TGCGGGCGCTACTAGCTTGTAGAGTCCCCACGGGTCACTGTGCCGGTGGGGAAACGGGGCTGCTTCGCCTCGCGCGCCGGATTGATGCTATCCGGCGTGGGGTCGTATCCGAACGCCGTCGTATCGGCCAAGGTATCCAATCCGCGCCGGTCGAGGGCTAGGATCCGAAATGCCAACCCAGACCAACTGGCTAGGGATGAGTAGTTCGTGCGCGCGGACGAACGCCCGATAAGTTGCACGTGGGCAGGGACATTGCCCACCGCTGTAAAGCCGAAGACCGACCACCCTACACCAGCTATCTGTCCGCTCGGACAGAGCCCAGAGGGCACGTCACTGACGTGGTGTATGCTGCACTGACGTTTTGTCGCCCGAGACTGGAAACAGCCACTCATATTCATTCCGTTCCATCGACCCCCGGGGGGAACCCAGAATTGCGGGTCGACGGAAACAGCCGTTCGTCATCCTGCTGCATAGGGGCTCATCCCCCAAAATCAGGCATT # Right flank : CGTTTCTGTGCCTTGACGAGGAACTCCTTGTCGCGATCGACCAGTCGTTGGGGGTCAGCTCCGAGTCGCTCCAGGGCGTCTTCGATGTCGGTCGGTGTGCCGCCGTAATCCTCGACGGAGCGACGATGCTCGCTCGAGCGATGGACCTCGCAGTAGATGAGCCGACAGCGGTCGTGTGAGAGCGCCGCTTCCATCCCCTCGATGACGGGGAGTTCGGCCCCTTCGACATCGATCTTAACGACCGTCGGTGGTGGGACGTCGCCGTTCGCGATCAGTTCGTCCCCGGTCCGAGTCGGTACGGTGATCGCATTCTCGCCGGGATCGGGTGCGAGCGACCCGATTCCATCCCAACCGGTTCGGGAGTACGACGGGCTGTCGAACTTCGCAGTGCCGGATTCGTTGGACAGCGCACAGTCCAGTGCGAACGAGGGGGTGTCGTTGTACGCGAGGTTGGTTCGGAGCTGTTCGAGAGTTTCTGGCAGCGGCTCGAAGGCCGCAAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGGACCCTTGTGGGGTCGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 144672-144421 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRCH01000002.1 Halomarina oriensis strain SPP-AMP-1 SPP-M1-1.IonXpress_2017_trimmed_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 144671 37 100.0 40 ..................................... GAACAATGAGTCTCTTCGACCGCTTCCGACAAGGCAAATC 144594 37 100.0 35 ..................................... GGTGCTATACAATAGTGTGTAGCAATGAAGATTGA 144522 37 100.0 28 ..................................... CCAATATTTGTGTGCACTTGGACTTGGA 144457 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 100.0 35 GTCACAGTACCCTAGAAACCCAACACGGGATTGAAAC # Left flank : CCCT # Right flank : ACAGCGATGCGATCCCATTGCGAGGCAGCGATGATTCGCCGTGTTCACGGGGACAGCGACAACGGGACCGCACCAGATCGGGGCGACTCCCGCACTCTCACGGTTCGATCAATAGCGGCCTGTGCCATACCATATGTATGTGTTACACAGTCATTCGGATTAGGGTTACAGCAGTTACCATTAAAGCTATCGGCCTGAGATATCGGAAAGAGCACCACTGTGACCGATCCCTCCGAACGCTTGGAGAGAGTCGGATTAGGTTACATCTCAGGTATATTTTCAAGAGGGTTGAGTACAAAGAGATGGTAATGTTTGTCCCATCGACGGTTCGCGACGAGTCGCTCTCGCTAGACCAGCGGGACGGACTCAGGCGATGGGTACGTAAGCATCACACTCACGAGAGTTTTCAACCACCGTTGTTGTTCGCTCTCGTCGTAGCAGGGGACAAACCTGCCACACACATCACACCACGCAGTTGGGCCTTCCCTGACTCACAATTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGTACCCTAGAAACCCAACACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 21303-20829 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRCH01000022.1 Halomarina oriensis strain SPP-AMP-1 SPP-M1-1.IonXpress_2017_trimmed_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 21302 37 100.0 34 ..................................... CTTCCAAGATGCTATTGGTGGGGCATTCAATTTC 21231 37 100.0 37 ..................................... CGAGACTCCTGCCTCATGTCACGAATCTTGTGAAGGG 21157 37 100.0 37 ..................................... TTTGTCGGTGTCTCGGTGAACCGCGAGGCAATACTCT 21083 37 89.2 36 .................A..G..GA............ ATTGGCCGGACGCCGTCATTATCTGGCGGATCGCGC 21010 37 91.9 36 ....................G..GA............ GATTCGTGATTATCTGCTTGGGTCGGATGAAGCGTT 20937 37 100.0 35 ..................................... TCGTTCGTTTCTCCGTTCATAGGGTTTGAGCAGTG 20865 37 75.7 0 ..........C....A.AC.C..CA......CC.... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 93.8 36 CTTTCAACTGTGCCAGCGGCAACTCAGGCATTGAAAC # Left flank : GAGTTTTATATCATAACGGGGCAACGATGAGATCGGAGGCCGAACACGAGATAAGCCCCACACGGATTGTGTGGGTGCCGGGTGCTGGAACCACCCGACAATGGTCTCCATAGCAACCAGAAGACCATGTTCGATTCTGATCCAAACGACCTTGAAGGTACCGACGTGCTCAAGAATGACATCGAAGAGACGATCCTGCGCTACTGCTGGGCCAAAACCGACGAATGTCCGGCGTGTGGCTGTGAGACCTCGCTTCGCATCGGCGTCGAGACGGCAGGCGAGGAGATCGTGAGTGCTCCGGACTGCCAGCTGTGCGATGCCGTAGTCACAGCAGTCACCGACGGCGTCGAGTTCGATCTCGTCTGACCGGATCCGGACAGTATTGCTGGTCCTTCGTGGACCTTTATAAAGTCCGTGTACAGGGGGGGTCCACGAAGAGAGGTGGCGCTGAGACCGATGGAGAAAGCTTTATTGGATCGCTCCACGGATTTTCACCCCCT # Right flank : GATCTACCAACAGGGATCGACACTCAACCAATACCACCGATCAAGTAGCAAAACAAACAAAAACACCCAACCACTAGTAACAAAACACTAACAAACAACGCGTGAAAGACGGAGTTCCCACGATAGGACACCACAGTCGATGGTGCAATCGGGACGAAAACACCGGTACGAACACGTTTTTGCGGAAGAGATTGCTGTTTCTGTATGATTTAAGATATTAGACCACATCGTTGCAGATCACATCAGCAATGTGTTTGGATAACCGATCAGATCATGTCACCCAAAGTACTGCTGATGTGACCGAGACACCAATGATGGACAGTGAGTCCAGTTTACAACACAACAGCAACGAATCGACAATCGAGGGGGAGAGATGACGACCGCCGAGGTCTTGCAAGGACCAGATGAACGGCTATTTATCCACGTTCACACTGGAGACGTAACGTTATTGACAGAGATCAAAGAGGAGGAGTACGATCTCCTCAAACAGACAGTTCGGA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACTGTGCCAGCGGCAACTCAGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA // Array 2 22205-22024 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRCH01000022.1 Halomarina oriensis strain SPP-AMP-1 SPP-M1-1.IonXpress_2017_trimmed_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 22204 37 100.0 35 ..................................... GGATATGTAGTCCGTTAGGAGCCATCAACTCGTGG 22132 37 100.0 35 ..................................... CCTTCTTCGCGGAAGTACCACCCGATGAGCGGGAT 22060 37 97.3 0 ...................C................. | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 99.1 36 CTTTCAACTGTGCCAGCGGTGACGAAGGCATTGAAAC # Left flank : CGGCTGCTCTCGAACAGTTTCAGGCGGTGGTCAGACGCGAAGACCAGCGGTTGATCGACACGGAGGGTATCGTAGAGTTTTATTCGACGCTTCCCACCACTGGCCCGTTCTTCCGAATCGGCTTCGGGACCGGCCACCACTCGAAAACCGTCTCACTGGCGCTTTCGGAAACGAAGCGGATCAACGCGAACATTGAGGCCGGATTAAAACACGCTGACTGTGGAGGATCGCTGCGAAAGGATAGGCGATCTACCAGTCGTCTGTTCTGCTCACGTTGCTCTGAAGGTGATATCGTACCGAATTTTGAGAATGTCGTTCGATTCCCGAAAACGCGGGAATTCGTTCTCCGTAATGGTTCACCCTACGCTCCCCTCGGCTGGATCGAGGCCTCGCTTCGTGGACCTTTATAAAGTCCGTGTACAGGGGGGTCCACGAAGAGGACGGTCGATGAGACCGATGGAGAAAGCTTTATTGGATCGCTCCACGGATTTTCACCCCCT # Right flank : ATGAGAACGGGATCCTCGCGTTGGCGAACGAACTCCGTATTCTACTGAGTCAAACCTAACAGCATCACACCACCCCGACAGCCGTTAGTTCCATCAACACGCGGTCACGACCATCACCCGACCGGAGACCTGACCGCTCACGTATCCATCGCCACCGAAAGCCGACACACCCACACAGAGCACACGAACCAATACAACGACACGATCGACACGATGGCCTAGAGTTTTATATCATAACGGGGCAACGATGAGATCGGAGGCCGAACACGAGATAAGCCCCACACGGATTGTGTGGGTGCCGGGTGCTGGAACCACCCGACAATGGTCTCCATAGCAACCAGAAGACCATGTTCGATTCTGATCCAAACGACCTTGAAGGTACCGACGTGCTCAAGAATGACATCGAAGAGACGATCCTGCGCTACTGCTGGGCCAAAACCGACGAATGTCCGGCGTGTGGCTGTGAGACCTCGCTTCGCATCGGCGTCGAGACGGCAGGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACTGTGCCAGCGGTGACGAAGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 3 160989-161242 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRCH01000022.1 Halomarina oriensis strain SPP-AMP-1 SPP-M1-1.IonXpress_2017_trimmed_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 160989 37 100.0 36 ..................................... TTCGGAAGGATATAGAGAACATAGATGGCCGAAGCG 161062 37 100.0 35 ..................................... AGTTTTTCTCTCATTGTTGGATTCCCTCAGCGGAT 161134 37 94.6 35 ....................C.A.............. TATCCTCAAATCTGTTCCGGCGTCGTGTTTGGTCT 161206 37 75.7 0 TG.....T..C............CG......C..G.T | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 92.6 36 CTTTCAACTGTGCCAGCGGCGACGAAGGCATTGAAAC # Left flank : GCGTTACAGTCCCACACGGATCGTGTGGGTCCGGGTGCTGATCCCACCCGGCAAAGGTCTCCATAACGACCAGAAGACCATGTTCGATTCTGATCCAAACGACCTTGAAGGTACCGACGTGCTCACAGACAGAGAGGAACGACGTTCCGCAAGCAGACGGCCAACGGCCGTCGATGACATCGAAGAGACGATCCTGCGCTACTGCTGGACGAAAACCGACGAATGCCCGGCGTGTGGCTGTGAGACCCCGCTTCGCGTCGGCGTCGAAACAGAGGGTGAGGAGATCGTGAGTGCTCCAGACTGCCAGTTGTGTGACGCCGTACTCACGGCGGTCACCGACGGTGTGGAGTTCGACCTCATCTGACCGGATCCGGACAGTGTTGCTGGGTCCCTTCGTGGACCTTTTTATGATCTGTGTACAGGGGGGGTCCACGAAGATAGGTGGTGCTGAGACCGATGGAGAAAGCTTTATTGGAGTTCTCCACGGATTTTCACCCCCT # Right flank : TTTGCCGATCACACCCGATAAACGAGCCCACACGTTCAGATATCAGACACTGGAAACACGGCCCGAAGAGACAGCCTACGAGCCGGACGAGACGCACTGCTGTCATATCCACCGTACCGGGATTTCAACAAGACCGAGCAGGCCAGCGCGAACCGGCAATCCATCGGAAATCATCGACATGCTTGCGACCGGATCAACGCCGTCGGTAAAGCCGACGCGTCGAGCAGCGACGAATGAGTATCCACCGCCGCGGCGCTCACCGAGCCGCGAACAGTCCCGAAACACAGCGTTGCCAGCAACAGCGACGAACCATACGAGCCATTGACCTCCTCCCGCGCCTAAAGTCGCGTGAATCCCACCATAGGATTTCGGGCCAGTCGAACCAACCCTAAGGTTTCAAGACGCATACGTTCCAAGCGTCATCTGCTAGGTGGCAGCATCGTCTTGGCTGTCTTGTGGAGCGGTCAAAGGCTCCCCATCCTCAGCCGAGTCATCGCTAT # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:0, 3:3, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACTGTGCCAGCGGCGACGAAGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 1 115513-115695 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRCH01000031.1 Halomarina oriensis strain SPP-AMP-1 SPP-M1-1.IonXpress_2017_trimmed_contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 115513 37 100.0 37 ..................................... GGCGTCGTTCCGACATCGCCGCTACTGCCGTCGTAGA 115587 37 97.3 35 ....................G................ TTGTTTTCTCATAGTTCGGTCTGAATAATGTGCGA 115659 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 99.1 36 CTTTCAACTGTGCCAGCGGCCACGAAGGCATTGAAAC # Left flank : CGAAGCTGCTCACCAGCCGTTTGGGCTGGTCGGTCGTTTCGACGGTGAACGGGCCACCGAACCGGTCGGTGATGTCGGTGATGGTGTCCCGGGAGTGGGAGGCGTCCGTCGAGAGCACCACCCGGTCGGCCCCGAGCGCCCGAGCGGTGAGACCGACGTGGGTGGTCATCCGGTCGTCGCGTCCCGGCCGGTGCCCGAGTCGGAGCACGGTTACCTCGTGGTCGTACATATCGCGCCTAACGCCGGGATGGGTTAGGCGGTTTCGCTGTCCGGTTGTGTTCCCGGCGGGAGGCGATCGGTGGCTATACCCCGATGGGTAGCGATGCTCTGTTCAGGAACGCGTTGCTCCCGGCGGGACTGAATCCAGATGCGGAACGTGTTGCCGTTACCCTTCGTGGACCGTTATAAGATCCGTGTACAGGGGGGGGTCCACGAAGAGGGCGGGCGATGAGACCGATGGAGAATGCTTTATTTGGGTTCTCCGCGGATTTTCACCCCCT # Right flank : CTGTAACACCGCTTTACCTTGTCGCTGTGATCGCGTGTTAGGACCGGATCACTGAAACAGACCGACGAGTCTCACACAGACAGGCGTCTCCGAGAATCGAATTAATCGACTGCTTGAAGACGGTCATCCTCACGTTTCTGTGATTCCCCGTATGTGGTAGTCGGGCACGTCATATTGTCAGCCAGTATGACCATTTCCTTACCGGCAATGCTAGTGAAATAAGAGAGGCTATTCGACGACAATCTCCGAAGGAGCGGGATGATTGATCGTCCGCGACACGTCCCCCTCTGACTCAACGACGTTGAGCCGATAGCGTCCCTCTGGCTCCTCAATCAGATATGCTTTCCACGGCTCCCACTCTGGACCGTCGATGCGGTGTTTGAAGGTCATATTAAACTGGACGACGCGCTCAACGGCGACGGTGTCGCTATCTTGAACCAGCGAGAGAATCCCGCCCTTTAGGGCGGGCGTGAATCGCGTCACCCGACTACGCAATCCAC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACTGTGCCAGCGGCCACGAAGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 1 15187-14857 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRCH01000034.1 Halomarina oriensis strain SPP-AMP-1 SPP-M1-1.IonXpress_2017_trimmed_contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 15186 37 100.0 37 ..................................... GGTTCAATCCCACGACTGAGCAAATCCGCGAGATGCG 15112 37 100.0 35 ..................................... TTTATTTTCGATGGCCGACAGCGCAGCGTTGTACG 15040 37 94.6 36 .................A..G................ CCTTTGCCAGAGGACGTTATCTTTCGCAGGGCGGGA 14967 37 91.9 37 .................A..G............A... GCTTCGTTGCGTTGCTTCGTGAACCGGAGAATCATCG 14893 36 78.4 0 ............T....A..G..C...A..G..-.G. | A [14862] ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 93.0 36 CTTTCAACTGTGCCAGCGGCCACGAAGGCATTGCAAC # Left flank : ACTGCACGGGAGCAGCTTAACGACTTATCTACGGCGGCACAGCAGCGGATCAAAACCAAACTCTTGAACGAAGTAAGCGATGATCCCGAGCGGTACCTGCGGCCACTCTCGAACTCCCCTCACCAGAGCATTCGCGTCGGGGATTACCGTGTGATCGTCGACTACGATGGCGACAGTGATCGGATCAAAATTCACGACGTGGGACACCGACGCAACATTTACGACTGAAGCATCTATCGACCGACGAGACGCGACGGTTCGAGGGCAGGGCGTGCTCACGACGACGAAAGACGTATTCAACGGCGCTCCGATGAGTTGCGACCGCCAAGTACACTGGGCGGCGGACTGTCTCGGGCGGGATCGAGTACTGTCGCGGAACGTGTTGCCGCTACTTCGTGGACCTTTTTATGATCTGTGTACAGGGGGGGTCCACGAAGAGAGGTGGCGCTGAGACCGATAGAGAAAGCTTTATTGGACCTCTGGACAGATTTTCACCCCCT # Right flank : GGACCACTGTCACCGTCCACTGCTAGTATACCGACTGTGCAACTGCGCCACCCACCGAGGCGTCAAAATCCAACCAACCAGTCACATCCACGCCCACTGGACCGAACCTACCAGTTCTGCCGCCACACCCAACCGAGAGCCGCCGCTCTCGAAGCGCCCAGACAAACCAACCCAACGACACGATTCAACCAATAGCCTAGAGTTTTATACCATAACGGAGCAAGGATCGAATCGGAGGCCGCACACGTTGAAAGTACCACACGGATTGTGTGGGTGCCGGGTGGTGGAAGCACCCGACTGTGGTCTCCACACGAGGCAGAAGACCATGTTCGATTCTGATCCAAACGACCTTGAAGGTATCGCTGACATCAACGACGGCATCGAGCAAGCCATCCTGTTGTACGGTTGGCGTCGAGCGGACTCGTGTCCGGCGTGTGACTGTGAGTCACCGCTCCGCATCGGCGTCGAGACGGGCGACGAGTCGGCCGTCGCCGTGCCCG # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACTGTGCCAGCGGCCACGAAGGCATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 9828-10079 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRCH01000036.1 Halomarina oriensis strain SPP-AMP-1 SPP-M1-1.IonXpress_2017_trimmed_contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 9828 37 100.0 36 ..................................... CGCGTGCGGCTACTATCGCGCCGAAGGCGTGAATGG 9901 37 100.0 35 ..................................... GGCGATGTCCTTGAGGCGCAGGTCGGGACGAACGT 9973 37 97.3 33 .....................G............... TGTGTCTGTGGGGATCTGCACAGGGACAGTCCC 10043 37 97.3 0 .......................T............. | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 98.7 35 GTCACAGTACCCTAGAAACCCAACACGGGATTGAAAC # Left flank : TGTCCTCACAGAGATCCAGCAGATCGATAGCGTTCTCGTTTTCAGCGATGTTGATGGCAAGGTCCGTGAATGGGAACTGCCCACCCTCAGCACGACCGTGTCCGACACCGTGTATGAGACTCTTACCGCCATCGCCGGGGCCGACGGAGAGATCTCGATACCGCAACTCACGGAGGCCACTGGCCGTCCAAAGAGCACGGTGGCCCGTCATGTTGATCTCCTCGAACAGAACGATGCTGTCGCCGGCCGGCGCGAGGGGAAAACGAAGCGTGTGTCACTGACCCTGACGGGCCAACTGGTGGTGAACAGTGAGTGAGGGGGTGAGTTGGAAGCACGTCCCGACTCCACTCTCAGAGTCACCCCCGGGTGAGACCTCTTGTGAGGGAGTGATCTTCGTGGACCTTTATAAAGTCTGTGTACAGGGGGGGTCCACGAAGATGCCCCTGTTGCTCACGGAATGAGAAATGCTTATAGGCCCTCTCGGCGCATGTTCACCCCCT # Right flank : CCGCCGACCAAAGGAACTCTCGTTCGACGACGTGCGTCACAGCACGTTACAGACGACCCCTCGTCGGGTTGGAGCACGTTCTTTATGGGCTATCGGTAATATGGAGGTCTCCATCGACGGCATACAGATATCCCTTTGAGAGCAACCGATCAAGGACGCTGTGGGCAACGGACGGCTCACAGTCGAGCTCTGCAAGTGCGCTGACGGCCACCGCTCGTGAAAAACTGTCTGCAACCGGCTCGTCGTCTTCGTACAGTCGCTCAAGGGCGGCTTGTTCGGTGTGACTCAATGGTGTCCGCTGGTTCCGCATACAGACATGAACGGCCCCGAGAACCGAGACTGTTCGGGTCCGTGCCAGTATCGGCGATAGCGAGCTGTCGAGAGAAGTTGTTCCGAACTGTCATCTTCATCGCGGATCGCACGCTCAGTCAACTACTGTCTTGCTTCCAGTACTTCCGATGCAGATTGGTATATCTGCAGCCGAACAGGTCTTGTGCAAT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGTACCCTAGAAACCCAACACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 27-317 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRCH01000051.1 Halomarina oriensis strain SPP-AMP-1 SPP-M1-1.IonXpress_2017_trimmed_contig_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 27 30 100.0 35 .............................. ATCGAGGTTGTCCGGTCCGTGACGGACGAGGCAGC 92 30 100.0 38 .............................. GTCGAGCAGCCGAGCACCGTGATCCGGCGCGCGATCGT 160 30 100.0 35 .............................. TAGATGTCCCAACCGGGCTGCCGTCGCCGCATTTC 225 29 90.0 34 ....................-.A...G... GCTCATTAGATACTCTTCTCCTTGGTCGAATTGT 288 29 83.3 0 .......-..........TT..A.C..... | A [299] ========== ====== ====== ====== ============================== ====================================== ================== 5 30 94.7 36 GTTACAGCAGGACCCTAGACGGGTTGAAGC # Left flank : TCAGTTACGCACGTCGTTATTGCTGAG # Right flank : CTTGGTGAACGTCATCAGGACTGTCACTCAGATAGTACAACCTAGTAGGTGAACATGCACCCCAGTTGAGCATTCAGCAAGTGACGAGCAACGGACCCACAAGTGGCTACGGTCTCGACCGTCCCTCCGTCCGTGCAGATGCAATTCTTTTACTTAATCATGTAATGTACTCAAATAATGATCTACAGGGCTGTATATCGCTCACGGTTCTCTGCAATCGTCCGCACTGTTGAGCGCGAAATGCCGAGTGACCGAGCGAGTTGTCGCCTGCTCGCCCCGTTATCGAGTGCATCGAGCACCACGACCCCTTTCTCGTCGTCATTCGGTGTGAGATACTCGTCGGACCCCTCATCGAAGCCGAACGGCGGCCGACCGTGCCATTTGCCCTGTTCGCGCGCTGCGGCAATCCCTTCACGGACGTTCGCCCGCTTGATCGCCGCTTCCAACTCGGTAAACGTCGCGGCCACAGATACGACTTGATGTAGGTGATATCAACTGTA # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCAGGACCCTAGACGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 48630-48957 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRCH01000016.1 Halomarina oriensis strain SPP-AMP-1 SPP-M1-1.IonXpress_2017_trimmed_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 48630 37 100.0 37 ..................................... CAGTGATGACGACTTGCACACACGACGATTGCACGAA 48704 37 100.0 35 ..................................... ATTTGATACGGTTTTACGTTGCTGATAATCAAACT 48776 37 100.0 36 ..................................... TTTGGGGCGCTTCCGGAGGGCTTCGGATCGTGGATC 48849 37 100.0 35 ..................................... CATCGTTGCGAGAACTGTGGCCGCGATCTCGCAGG 48921 37 97.3 0 .................................G... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 99.5 36 GTTGCAGTAGGGCAGAAACCCACTACGGGATTGAAAC # Left flank : GACCTCGAAACGCTCGGTTGCCTGATCGAGCAACTCGACGCGGAGTGAGAAACGGACCGAGTGTCTCCAGAGTCAGCGACGATATCGAGTGAGAGCGCTTGAACCGCTGTTGGCGGCTGACAGAGGCGTGTCTGTAGTGTGCCACCGAGTCGGACCTGCGGATCGGCTGGGAACAGGAGGGTGATCGCTCCGGAGGCGACCGCTCCCGGCTCTGCGTCGTGGAGTTGGCAGCGAGACCCCCGATGACTGTGGTTTCGCGCTGCGGCGTGGTGCTGTCTGCGAACGTTTCAAAACGGAGCCGCCCGTACACTGATTCACGGCAATCGATCCGGCCGCATCAGCTGCGATCGATGCTGGAACGGTCATCGAAGGGAACGTTATCGGGCCGGATCTACGTGGACCTTTATACCATCTGTGTACAGGGGGGGTCCATGAAGATCGGTGATGCTCTCACTGAATGAGAAATGTTTATAGGACCTATCCGCGAATATTCACCCCCT # Right flank : CCTCCAGATCGAGGTCGTCCACCACCTTTTTTCCGCTCGGGTGCGCTTCGCGCACCACTCACCACGCGAGACGGTCGCTCACTTCGTTCGCGCTGCGACTCGC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTAGGGCAGAAACCCACTACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //