Array 1 25837-28305 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRSY01000018.1 Escherichia coli strain FWSEC0595 FWSEC0595_contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25837 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 25898 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 25959 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 26020 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 26081 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 26142 29 100.0 32 ............................. ACTCTGATAGCCTGCTCAGAATCAAGGCGCAG 26203 29 100.0 32 ............................. CGCGATAACGCTCGCCCATCACGGTTTTCAAT 26264 29 100.0 32 ............................. CCAATATTTTTTGCATAAGATAAAGGTGATAA 26325 29 100.0 32 ............................. TTCTGTCAGCGCAGGCATACGGCCCGCCTGTG 26386 29 100.0 32 ............................. GCCAGGCGGGAAGCGATGGGCGGTTAACTGGT 26447 29 100.0 32 ............................. CGGCGACGATGATCCCCTCAGGTATTGCGCAG 26508 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 26569 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 26630 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 26691 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 26752 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 26813 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 26874 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 26935 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 26996 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 27057 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 27118 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 27179 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 27240 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 27301 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 27362 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 27423 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 27484 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 27545 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 27606 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 27667 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 27728 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 27789 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 27850 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 27911 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 27972 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 28033 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 28094 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 28155 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 28216 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 28277 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 542331-543458 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRSY01000001.1 Escherichia coli strain FWSEC0595 FWSEC0595_contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 542331 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 542392 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 542453 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 542514 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 542575 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 542636 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 542697 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 542758 29 96.6 32 ...........C................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 542819 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 542880 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 542941 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 543002 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 543064 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 543125 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 543186 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 543247 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 543308 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 543369 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 543430 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAGCTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTGAACGTGAACTGGAGATGTCTACCGAGATTGCACGTCTCAAACGCCAGCTGGCAGAACGGGATGAAGAGCTGGCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //