Array 1 4868-6936 **** Predicted by CRISPRDetect 2.4 ***
>NZ_ORYB01000265.1 Xanthomonas fragariae strain CFBP 4786 isolate CFBP 4786, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================= ==================
4868 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG
4928 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC
4989 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA
5049 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT
5109 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA
5169 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC
5229 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG
5289 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC
5349 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC
5409 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT
5469 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC
5529 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT
5589 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC
5649 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA
5709 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC
5769 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC
5829 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC
5889 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA
5949 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC
6009 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG
6069 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC
6129 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT
6189 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC
6249 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT
6309 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT
6369 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG
6429 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC
6489 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG
6549 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA
6609 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT
6669 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT
6729 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC
6789 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG
6849 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT
6909 28 100.0 0 ............................ |
========== ====== ====== ====== ============================ ================================= ==================
35 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA
# Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT
# Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTTCCTAGACATCTCAAGGCCATGGAAAATGGTCAATTCGGAGGTGTCTATGAGCAGCAAGCGGTATACGGATGAATTCAAGATCGAGGCGGTCCGGCAAGTGACCGATCGTGGTTTCAAGGTGGCAGAAGTCGC
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.51,0 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//
Array 1 601-807 **** Predicted by CRISPRDetect 2.4 ***
>NZ_ORYB01000282.1 Xanthomonas fragariae strain CFBP 4786 isolate CFBP 4786, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================ ==================
601 28 92.9 32 .............T.C............ TTACCAAGCAGGTGCACCAGAACTGCCCGCGT
661 28 96.4 32 .............T.............. CATTTGATTTTAATGGACTCAACAAGCCTCTC
721 28 100.0 31 ............................ TATCGTCGCGCCACGCATAGCAGACCGGTGC
780 28 78.6 0 A..........TCT.......G..T... |
========== ====== ====== ====== ============================ ================================ ==================
4 28 92.0 32 GTTCACTGCCGCGCAGGCAGCTCAGAAA
# Left flank : CAGCCGCGAACGAAACAACTCGTCGGCGGGTCTGTCTTCGGCAGCAGGACGGCGTGTACGCATGGGCGGAAATTGCAAGAAACCAGCCTTCAGCGTAGCGAACACTGGTAGTTCTGGCACGCCGGTGAAGACATCAAGGCCTTGCGGTCGTTGGGTGGTTGGGGTTTTTCAGGGGCGACTTTTTAGGATGTCGCGCTCCTCGGTCACTCGACGCAACTCTGCCTTCAGCCGCCGAACCTCGGCGCTCTGGTCCACCTCGGCGCGCTGCACCACGCCAGGCTTGCCGAACTTGCGCAGCCAGGCGTAGAGGCTGTGCGTGGTGAGACCCAGTCGCTCCGCGACTTCTGCCACCTTGAAACCACGATTGGTCACTTGCCGGACCGCCTCGATCTTGAATTCATCCGTATACCGCTTGCTGCTCATGGACACCTCCGAATTGACCATTTTCCATGGCCTTGAGATGTCTAGGAAACCCTGGGCGTATCATGTGTAGTAGTTAG
# Right flank : ATGCGACCGGCCCGTCCACTCTCGCGCTGTATTTGCCACGACTGTCGCGTCTCATGGACAGGCGACCTGCAGTGCTCCATGCATCGGCATGTGCTGTTGAACAGGTGACGTTAACCGCGCGCGCATTGGAAAGGCATGTTTGCGCAGGCGTAGCAGTGTACGACGCGTGACGTCGTCGACGCCTTCAACAGACGTGCAACGCAGGGGAAAACCGGCGGAAGATGCACTGCGATAAAGCCACGCCGCGCGCATCACCCGCGCGTGCACTCACTTGCGCCAGTAAAACCCCAGGAACATCGCCACCGCCGATTCGGCCATCTGCGTCTGTTGCTCCGGCGACAGCGGCGGCTGGCCCGTGGCGAGCTGCGGCCAGAACGCGAAGCCCTGCACCAACGCCTGCAGCTGCTGCGCGGCGAAGTGCGGCTCCACGCTTGCGAGCCGCCCGTCGGCCAACGCAACGCGTCGCCAGGTGGTGGTTCCTTCCTCCTTGCTGCCCAACG
# Questionable array : NO Score: 3.65
# Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGCGCAGGCAGCTCAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//