Array 1 127219-127717 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHJN01000022.1 Escherichia sp. E10V4 10V4_22_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 127219 28 100.0 32 ............................ GGTAGCAAATCAGCTTTAGCGCGCGCAAAAAC 127279 28 100.0 32 ............................ GGAGGCGACGGAGGACCAGGGCGTGCCGGTTT 127339 28 100.0 32 ............................ GCTCACTGCGGATCTGTCCATACACCTACCCG 127399 28 100.0 33 ............................ GCCCGGAGGCCATGTTTGCGCTGGAGTTCAATT 127460 28 96.4 32 ..................T......... GCATCAGACTGATTGCCGCCCAACACCAACAA 127520 28 100.0 32 ............................ TTATAGATTTGTTTGCTTTATAGGCTTGGTTG 127580 28 100.0 32 ............................ TCAGGAAATAACGCAGCAAACGTCACCCCCGC 127640 28 100.0 32 ............................ AAAACGCAACAAGCCACTACAGGAAGCCATAC 127700 18 64.3 0 ..................---------- | ========== ====== ====== ====== ============================ ================================= ================== 9 28 95.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTTATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTAAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCTCGTGTGATTCAGGATAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGTGGCCAGGTGACAGTCGCGCTGGATAAAGATAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATAGGGTGGGGGAAGTTCGGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGAAAGGTAAGAATAAAAAAGGGTTGCAGCAGTAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : | # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 141727-141278 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHJN01000029.1 Escherichia sp. E10V4 10V4_29_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 141726 28 100.0 32 ............................ ATTGCTTGAGACGAATACGCAGGCCGTTGGTC 141666 28 100.0 32 ............................ TCGTTTCCCCGTATTCCCTCGGGGCTTTTTAT 141606 28 100.0 33 ............................ AATTACATTTGGTCAATGCCTGGCTGGCAGCAA 141545 28 100.0 32 ............................ GGAGAAACCCTTTTCTAAAGGTGCCATTGGCT 141485 28 100.0 32 ............................ CTTTATTGTGTCGTAGTAAAGTTGGGCCACTT 141425 28 96.4 32 ....................T....... AGCTATGCAAATACGCCCTTGATAGCTGAACA 141365 28 100.0 32 ............................ GATACAGAACCTACATTGGCCTCGGAGGATTC 141305 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCATCCCCGCCAGGTTGTGCAATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATGGATTGATTCGTTTGGTTACGCAATGAACATACTGTTCGCGCCCGGAGATTTTGACCGTATGTGTTCTGGTCAATTGTTTATCAAAATCTATGCATAAAATATGAGATTGAAGAAGTACCAAATAGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTTTTTTGATGTCTGGAAAAAGGGTTTAAATCTGCGACTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTTAACACACCATCCTCCAGTATTTATTCCCCGTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAGCAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGAGCGGTGAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //