Array 1 47460-47693 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTYL01000071.1 Enterococcus faecalis strain CVM N53420 N53420_S17_L001_R1_001_contig_71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 47460 37 97.3 28 A.................................... TGCTGTTTCTTTACATATTTGTACGTAC 47525 37 100.0 29 ..................................... ATCTCCTTTAATACATTTTTATTAAAGTA 47591 37 100.0 29 ..................................... GTTAGCCATCTCATAGTTTAATGCTTCAT 47657 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 99.3 29 TGTTTTACTGATAAGAAATTATTGAGAGTACAAAAAC # Left flank : CGCCAGATTGGACTTGACTCAGACCTGTTCCGCTTCCGCCACCTTGGACATTAATAAATCTTCCCGGATTTTGGCTTTGATATTCCTCACTCGCTGTCTCTACTAATGGTTGTAAAGCTGATGAGCCTACCGCTGTGATGGATTCACCACGATCAATCCATTTTGCACATCCTGTTAAAGTAAGTATACTTGCCAAACCAATAAATAATAGCAATCTTTTTTTCATCGATTCATTATTCCTCCAATTAATTTCAATCTATTCCATTTTACCATTATATGTAGGACTTGAAAATTATAAGTTATCAATTTGTTGGTACAACTGAGAAAACTCTTAAATTAAATAACAAAAAGTATCTGAAGAAGCCAATTTGGCTGTTGCTTCAGATACAAACAATTATGCTAGAAAGATGTCTATATTTAAGAATTTGGTGGGAATGACTTTATTTGAAAGATTATTGGGAGTACAAAAATAATTTATTCATGGTATCTCCTTTCAATAA # Right flank : | # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTACTGATAAGAAATTATTGAGAGTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 1491-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTYL01000065.1 Enterococcus faecalis strain CVM N53420 N53420_S17_L001_R1_001_contig_65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1490 36 100.0 30 .................................... TTTTAAAATCTACCTGAGTCCCTGCAGTTT 1424 36 100.0 30 .................................... GAGTCCACATCGTTATATACTTGCCCGACA 1358 36 100.0 30 .................................... GTACCTCTATGGAATCTGGGCGAATCATTT 1292 36 100.0 30 .................................... TTCAACTGGTGTTTTAATTTTCCTTAGCTG 1226 36 100.0 30 .................................... CGACTCTGTGGCGATTTCCATGCGGGACTA 1160 36 100.0 30 .................................... AGGTGGGTAGGGTGGTAGGCAACCTCATTG 1094 36 100.0 30 .................................... CAAGCCCTCAACTATCTTGTAACTCGATGG 1028 36 100.0 30 .................................... AAACTGGGGTTAATTGATTGACTTTCCCCC 962 36 100.0 30 .................................... TTGAATCCCAAAGTCCACTAAAGAATTCTT 896 36 100.0 30 .................................... ATTTGCCAGATCCACAAGCAAAGGTTGGCT 830 36 100.0 30 .................................... ACTATTCTAACGCGGGTTGGCAAGATATGG 764 36 100.0 30 .................................... CCCTAACAATATTTAGATATTGTGGTTTAT 698 36 100.0 30 .................................... CTACACCCTTCGTTAAAGTACCTGTTAACT 632 36 100.0 30 .................................... GATCAAGAAGAGTTATCGAATGCAATTCTG 566 36 100.0 30 .................................... TGTGGAACTGTGAATCGTTGGTCTACCCAA 500 36 100.0 30 .................................... GATCAAGAAGAGTTATCGAATGCAATTCTG 434 36 100.0 31 .................................... TGCAGTCGATGTACTTGTTAGGAAAAAGCGT 367 36 100.0 30 .................................... GTACTTGCTTTCCTGCATCTTCTGCAACAG 301 36 100.0 30 .................................... GTTATAAAGTGCAAGAAGTTACTGGAAGCA 235 36 100.0 30 .................................... CTTATTAGTTATATAAAAATGTCATTAATA 169 36 100.0 30 .................................... AATGAAGCATTAAACTATGAGATGGCTAAC 103 36 100.0 30 .................................... ATACTTTAATAAAAATGTATTAAAGGAGAT 37 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 100.0 30 GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Left flank : ATCCACTATTTATTTCAACAATTAAAAGAAATAGCACGGGAAACAAATCAGTTAAAGTTTTTTATTTTTAGTAATCGAAGTTTGCCTTTGGCTTATACAGAAGAAGATATTGAGAAAACGATTTTGTTATACGATCAGTACCAACAGTTGCCAGCCTTTGATATTTTTCGTCAAAGTATTGAGCGTCATTATCCCGATGAATTTGTTTGGACGAATCAGCAATTGGTTGATGCTTTTTATCGAGTCTGTCATTTTGTTGGTGATCAGTATACAAAAAATTATCTTTTACCTAGAGATATGATATTATTAAAATTGTTAAAAGAATTGTTAGATGACAATAGTGAGAGTGTCGAGACGTCGATGGGAAAGCTCACTGTGTTGGAAGAACAATATTTTCGTGAACGGTTATTGTGGAAAGAGTGAATCTGGGATTTTGACCGCGTAAAGTTATATTTTTTGTCAAAAAGCTTACTAATGAGATTTCAAATTTTAAATTTGAG # Right flank : CA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //