Array 1 35920-38972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHZ01000131.1 Geobacillus thermocatenulatus GS-1 contig_131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 35920 30 100.0 35 .............................. ACCCACGGCGCAGGGCAGTTTTTTCGTGTGACATC 35985 30 100.0 37 .............................. TAGTTCGCCTCAATCAGCGCATTGGACTTCGTCACGG 36052 30 100.0 37 .............................. AGGATGGCAGCAGAATTAGATGATGAGTCAATTTTAG 36119 30 100.0 38 .............................. AAATGTATGCTTCAATCAGAAAGTAATCGTTGCTTTTC 36187 30 100.0 37 .............................. ACAGAACACGGGCAAAGCCATAGAATATGATTAACTT 36254 30 100.0 36 .............................. TGCGTGAGGGGTTAAGCAAGATGGGGTGGCGTTTTA 36320 30 100.0 35 .............................. TCTTGATCGTTGTCTCTGTTCAGCTAGGTGTTTAT 36385 30 100.0 36 .............................. AAAATTTTACTTTGGTTTTTAGTTATAGCAGCACTC 36451 30 100.0 36 .............................. ATATCTTTTCACAATACTATCATTCTTCGATTTCAT 36517 30 100.0 37 .............................. GACGAAGTGGCATACCATGCAAACGACGGCACTTACC 36584 30 100.0 39 .............................. TCAATGAGTTATTCGAAACCATCGTGGTCGATGTTCCGA 36653 30 100.0 37 .............................. CGTCAGCTACGCAAAGATTGGAACACTTCTACTTAGC 36720 30 100.0 38 .............................. TATAACAATGTAATTCATGTAAAAGAATTCGGGACAGA 36788 30 100.0 37 .............................. CAAGCAATGGGTAATCCACGCTACAAAAATGGTTTTG 36855 30 100.0 37 .............................. ATGAGGCGCTTTTCGGCCATATGCAAGTGGCTGAGCC 36922 30 100.0 37 .............................. TCGCAATTCGGGCATATGTCATATTGTTCTTTCTTGA 36989 30 100.0 34 .............................. CGGTACGTGCGCACGACGTTGACCAGCCATATTA 37053 30 100.0 35 .............................. ATGCAAGGTTGCTTGGGATGTTATTCATCAAGTCC 37118 30 100.0 39 .............................. AAAGGAATTATTGATCGTTTTGAAGGCGATATTGCAGTA 37187 30 100.0 39 .............................. AAAAGTGAAAGTCAAAAAGGAGATGATACACAATGAGCG 37256 30 100.0 34 .............................. ATACCGGCAGGACAATCGATAGAGGACGCGGCTG 37320 30 100.0 38 .............................. GGAACGGAAAACACGCGCGATATTAACCGCGCCATGTA 37388 30 100.0 36 .............................. GTCGTTGTGGGTGAGTCTGTTTTAGAAGCAAATCCC 37454 30 100.0 36 .............................. TGTAACCTTGCACTATAACTATAAGCATCCGGAGTA 37520 30 100.0 39 .............................. ATTTGCTCGATCCCTTAAACCTTTCCGAAGCTGATACAG 37589 30 100.0 38 .............................. CATGCACCCTGATAGGTATTCGCCTAGTATTGGCGTTC 37657 30 100.0 39 .............................. ATTCACAAGATATGTTCGCAAATTCGAAGTCGTTTATCT 37726 30 100.0 36 .............................. ATATATCGACATAAATCGAGATGGATTTTTGGATTC 37792 30 100.0 41 .............................. CCCACGCTTCAGCGTGGAATGGCTCATACACAACATACCAC 37863 30 100.0 39 .............................. AATACAACTAAGGCAATCATAAACAAACAACAATTCAAG 37932 30 100.0 40 .............................. TAGAAAGCAATCACCGTATCTATCGAACAAGCAAACTCGT 38002 30 100.0 36 .............................. TTGAAGGCGGAACGATGAACGAAGTAGAACGGCTGC 38068 30 100.0 36 .............................. ATCCGCGAATAGTCATCGCCTTCCATGACGGTGAGG 38134 30 100.0 38 .............................. GCCGCACCAGAAAACGAAAATGTTGTTGAATTCAGGGA 38202 30 100.0 34 .............................. ACTCGACGGTTGACAAGCCGCTCGATCATCTCAT 38266 30 100.0 37 .............................. AAGAATGGCCAGCCGAAGATGTGATGGAGACTCTTGC 38333 30 100.0 37 .............................. CTGTGCAATACCCAAATGATGCGGTGAAAAAAGAATA 38400 30 100.0 38 .............................. CGAAATTGTGGGGATTGTGGAATACAAAAAAGATGTAT 38468 30 100.0 39 .............................. AAGATTGCTTTTGTGCCGCATGATGGCTTTGTTGAGCAG 38537 30 100.0 36 .............................. TGGTTTGTCGCCAATAAAATCTCAGCGCCGTTAGAT 38603 30 100.0 36 .............................. TCGTTTTTCTTTTCGACAAATACTTGTGTATGAGGG 38669 30 100.0 39 .............................. TTGTTTTGGGCAAAATGGATCACCAAAAAACATACCGGG 38738 30 100.0 36 .............................. ACTTCACGCGGACTCAAACGAAACCGTTCCGCAATC 38804 30 100.0 38 .............................. ATCGGAACCTTTTGACGAATTTCCGCGACACGGCGAAA 38872 30 100.0 41 .............................. ACACATCTGTTCAACAGTTAAATCACGTGGTACAGGAATAC 38943 29 83.3 0 A...........T..G...-...C...... | A [38959] ========== ====== ====== ====== ============================== ========================================= ================== 46 30 99.6 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGAATCCGGCGCTGTCCGACGACATCATCCGCGTCGCCCGCTCGCCGATCCGCAAACTTGGACCGAACGACCGCCTCGTCGCGCCAGCCGTGCAATATTGCGCCTTATTTGGCAACGTCCCACACGGCTTGGCTAAAGGAATCGCCGCCCTCCTGCGATTCGATGATGCCCGCGATGCGGAAGCCGCCGCCCTTCAACAAACAATCGCCCAGCACGGGATCGAAGGCGCGCTTCGGCAATATGCAGGCCTTGAGAGTGGGCACCCGCTTGTGGCGGCGGTGAAGGACGAGTACGGAAGAATGGAGAAAAACAAAAGCTGACCGTCTTGCAAATGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAAATCCTACAAACAACACGGCTGAACGGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAACTCAGAGAGAAAAAGCTTGATTTGATGCGTATGGTTTGG # Right flank : ACTACAGTACCGTACAACATTTTCCCTCTCCGATGCAGGAGTTTCCGTCTGTACTTGCGAATGGATATACTGGAACACGTTCAAAGAGAGGTGATCAAATGGCCATTGATCATGACCGATTGTTCAAAGAGCTGATTCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTCCCCGACATGCACGAACACATTGATTTCCGCCATTTGTCCTTCCTGTCCGAAGAACTGTTCACTGATGTCACGGCAGGTGAAAAATACCGCGTCGATCTATTGGTTGAGACGAAGCTGAAAGGGGAAAATGGGCTGATCATCGTTCATGTGGAGAATCAAAGCTACGTGCAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1934-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHZ01000015.1 Geobacillus thermocatenulatus GS-1 contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1933 37 100.0 36 ..................................... GCCGATCGCCGCGCAGAATTTATCAAGCCCCAGCGG 1860 37 100.0 35 ..................................... TAGGCGAATCGTATTTAGATGGCTACTACTTAACC 1788 37 100.0 36 ..................................... AGCGCGTTCGTCAGCGTTGTTGGGTCCCCCGCCGCC 1715 37 100.0 33 ..................................... AAGATGTAGTCTACATTCCCGGACGATGTCTGC 1645 37 100.0 36 ..................................... GGTTTCGGGTCATCGTCAAACGGAACGGTGAACCGG 1572 37 100.0 35 ..................................... AAGATGGGGTTGATACCAAACACAACGGAACGGGC 1500 37 100.0 34 ..................................... CTCTTTGTGCTGAGCATTAGCAAACAGTGATTGC 1429 37 100.0 36 ..................................... AACGTGTATGCGGACAGAAACGAAGCAACCATTGCT 1356 37 100.0 35 ..................................... CGATTGCTTGCGACCAACCCAAAAATCCCGTATAC 1284 37 100.0 34 ..................................... ACACACGTCCCGATCTCAAACCAATTGTCATCAT 1213 37 100.0 37 ..................................... ATAAAGCCACATTGCAACAATACAATGAGTCGTCAGA 1139 37 100.0 38 ..................................... ATTTCCATACGGTTTTCCTCTCGCCGTTTTCTAGGCAA 1064 37 100.0 35 ..................................... CGCGCGATCGCGCAACATCGGAATACGGAATTCAC 992 37 100.0 34 ..................................... ACATGAAAGTTGAGCTAAACCCAAATAAGCATAG 921 37 100.0 35 ..................................... TAACCAAATCATCAGCCTTCCCCGATTGTCCCAAA 849 37 100.0 34 ..................................... CTTTCCTCTTTTGAACACTATGATAACGCCTTTC 778 37 100.0 34 ..................................... CGCGGTTCCGATAAGGTAGACGTCTTCCGTTCTC 707 37 100.0 34 ..................................... GCGAACATCCATTTCTAACGCTGGAAGCTGCGGC 636 37 100.0 34 ..................................... GTTGCGCTGGCGGCAGTCCGTGACGACAACGCGC 565 37 100.0 35 ..................................... TCGATACGAAAATTCGCACCAACTTGACCGTGCGA 493 37 100.0 37 ..................................... CATGAGCACGAAGTCGGTAATTCCGGTGACGCCGACG 419 37 100.0 34 ..................................... AACTCCTCCACGCATCAAACAGCCCCCTTACACC 348 37 100.0 34 ..................................... ATCTATAATCGGATCGTCGACCGGCGCAACCCAA 277 37 100.0 33 ..................................... CTTTCTCACGCAGAGACATCCGACTCATAACCG 207 37 100.0 33 ..................................... CAATCTGTTTCACAAGGTTGATTTCTTTTTTTA 137 37 100.0 34 ..................................... TCAACACTATGCAGAAATTCTTCCCACCAGTCAC 66 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 100.0 35 GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Left flank : CGGTCAAAGGTGACGTAACGCGGGAGTA # Right flank : CCGCTTCCTTTCTCCGCCATTCTGCCGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.40,-15.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [16.7-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 7687-8969 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHZ01000132.1 Geobacillus thermocatenulatus GS-1 contig_132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================================== ================== 7687 30 100.0 40 .............................. CCTCAAATCAGAGAAACCGGACGGCATGACATGGGAGCAA 7757 30 100.0 35 .............................. CTCTTATGCTTCTCATATGCTTCTTTCGCTTTTTC 7822 30 100.0 37 .............................. TCAAAAAACGGTTCGAGCCCATGAAGGAACACAGCTG 7889 30 100.0 36 .............................. ACGCTAAAGACAGCTTAAAATATGGAGATTTTTATT 7955 30 100.0 36 .............................. AGATAACCAATTTGCAATAATAAATATGTAACCAAT 8021 30 100.0 36 .............................. CTTTGAACGCCAACTTGAAAAATGTTACAATTTCTA 8087 30 100.0 37 .............................. CTGGGTGTGGTTCGAGGAAGCCTTTGAAATCGAGACA 8154 30 100.0 38 .............................. TTTCTTCGTTGGCTAGCGTTGGTCTTTCGGTGATGGTG 8222 30 100.0 99 .............................. CCAGACGACCGGAAAGAAAGTCCGGTCGCTTCGAACTGTTTTTATCGTATGAGGGATTGAAACTCTTTCCAGAACGGGATAATTTGCTCGCTCGGAATC 8351 30 100.0 35 .............................. TAAAGGGACGTCCGGAGCATCATGTGTCCAACTTT 8416 30 100.0 35 .............................. AAACGAAAGTCATGACAATGTGACGAGGGTAACGA 8481 30 100.0 36 .............................. AATTTCAGTGCCAACTGTGTGATCAAATGGAATTTG 8547 30 100.0 34 .............................. TACTTTTTTCTATTTGCTTTCGTACGGCATTTCC 8611 30 100.0 34 .............................. CCATCTGAACGTCAAGAAATCGACAACCTTGCCC 8675 30 100.0 35 .............................. TCTTGGCTAAAGATTTCTGGGATGCGGCGTTTCCG 8740 30 100.0 38 .............................. AAAGATGACGATATCGTGATATTCAGTCATGACAATGA 8808 30 100.0 36 .............................. AATTTACAGCCACTTTTGGCTTCTTTTGCGACGTTG 8874 30 100.0 36 .............................. CTTCATTCATGACGGCGCGCTTTTCATATTCTGCGA 8940 30 93.3 0 .....................A.C...... | ========== ====== ====== ====== ============================== =================================================================================================== ================== 19 30 99.6 40 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TTGGGAGCGCAAATCGCCTACGCCCGGTTTACTGCCTTGCCGCCGCTTGTGTATGTGAGTGTGCTTGGGCGCCTGATGGTGTCGCCGCTGTTGGCTGCGTCTTTGATCTTTCTATTAGGAATGGATGGCGTGACGGCTCAAGCGTTGCTGATTGCCAGTTCGTATCCATGTTCACGCAATACGGCGCTGTACGCGCTCGAGTATGACTGCCACCCCGATTACGCCGCCCAGGCGGTGCTGGTGTCGACCTTGTTGAGCGCCATTACCGTGACAGGCACAGTATATGCGGCCCGCCTGCTGTTTCCGATTGGCGGATGAAAACGGGGGCAAGCTGTCGTCGACCCCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTCTTTTCGCGTCAAACTCCTACAGCCAACGCAGCTAGACCGTATTGACAGAATTTTTGAAACGTGCTATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGCATGGTTTTG # Right flank : CTATTTCCCGCCACAGCTGAGCCGCCGCTGAGTTCAGCTTGTTTTACCGCTCGACATAGGAAAAGAGCAAATGCGAAATGGCGCATGCCCAAAAAACGTGGGAGGGATAAGGAGGAATTTGGCCGCGAAGAGCGAATACAGTACGGTGAATCCGACAATTGCAGGGAGGGAAAACGTGGCCAAACAGCGCATCGATCATGACCGGTTGTTCAAAGAGCTGCTGTCGACGTTTTTCGAAGAGTTTTTGCTTCTTTTCTTTCCCCACGTGTACGAGCACATCGATGTTCACCATCTCTCTTTCCTCTCCGAAGAATTGTTCACCGATGTGACGGCTGGGGAAAAGCACCGCGTCGACTTGTTGGTCGAAACAAAGGTGAAAGGGGAAGACGGACTCGTCATCGTGCATGTCGAGCATCAAAGCTACACCCAGCGGACCTTCCCTGAGCGAATGTTCCTCTACTTCAGCCGCTTGTTCCAAAAATACCGCCGCCGCATTCTCC # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 10301-8209 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHZ01000026.1 Geobacillus thermocatenulatus GS-1 contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 10300 30 100.0 38 .............................. TTGGCTTTTGCTGCGGGCGTAATGATGGCAGCCTCTAC 10232 30 100.0 38 .............................. ATCCAATTCAACAAACGATTGGTATTTTTTAAAAATGA 10164 30 100.0 38 .............................. TCATCATGCCTTTCTCCATTGCAATTCGCTCCTTTTCT 10096 30 100.0 39 .............................. ACCATAACTTATTCATCTTCCCTCCTAACGACGGACACA 10027 30 100.0 39 .............................. AATAACGAATATCTTGGTATTCTTCGGTCCAAATAATTT 9958 30 100.0 39 .............................. CAGCGTCCCAAAAAAAATCTTGGCCAAACCAATGAACGT 9889 30 100.0 35 .............................. TACGCTAACATCGTGAAGTTACCGCCACCCTTGCC 9824 30 100.0 35 .............................. AATGAGCATCATTTGATTTGCGCGAAGCGGATCTT 9759 30 100.0 34 .............................. AATGAAATGCAAGTTTATTTGTAAATATTCGTAC 9695 30 100.0 36 .............................. AGTTGTTTTTTCACCGATACTTTATGATAGTCCTAG 9629 30 100.0 38 .............................. CAAGCAAGAGACGCTGCCAAAGAAGCAAGAAAAAGTGA 9561 30 100.0 36 .............................. GTGGCCGCACCGCACCGACGACATCCGATTCAGTCA 9495 30 100.0 36 .............................. TCGCCCGTATTCCAACAAAGCGAGCCGTCGGCATTT 9429 30 100.0 35 .............................. TACGATTCCAACAAGTCACACCATCCAGGATCTCA 9364 30 100.0 36 .............................. TGGATTTAGTTTCGCACGATTTAGTGCCTTTTCAGA 9298 30 100.0 36 .............................. ACGACACGCAGCACGATCAACAAGGCGAGCAAAATA 9232 30 100.0 38 .............................. TCGGTGCGAATCCCATGGATAATCCCAATCAGAGAGTT 9164 30 100.0 37 .............................. CCAAGAGGCGGATTTGCGGCAAAAGGCATCAAGATGC 9097 30 100.0 36 .............................. GTGGCCGCACCGCACCGACGACATCCGATTCAGTCA 9031 30 100.0 36 .............................. ACCGAAGTATCCTTCCATTTCCTCAACCCAGTATTT 8965 30 100.0 36 .............................. CCTGATATAGCGCCCAAACCACCGTCATCCATATTC 8899 30 100.0 35 .............................. TGAGTGAAGAGACAACACCGAGCCAAGCATTTACA 8834 30 100.0 36 .............................. AACACTTTTTCACTCTATCCACTATTTGCTTTTTAC 8768 30 100.0 35 .............................. CGGAACAGCGAAATTAGAACAGCGCTCGAAGCCGG 8703 30 100.0 36 .............................. AACTTTGCGATCGTACGCGCCTCATCAATCGTTTCC 8637 30 100.0 39 .............................. CCGGACGACGAAATGGAACAAGCAACGATCGCTCAAATC 8568 30 100.0 38 .............................. ACGAAATATCTATACGGGAAAATGATCCCAATATCCAT 8500 30 100.0 35 .............................. TCACTTTTTCTTGCTTCTTTGGCAGCGTCTCTTGC 8435 30 100.0 35 .............................. TTGCGAAGAAACGAAAGAATGCAAAACCAGACTGC 8370 30 100.0 36 .............................. AAAACATTTTTCAACAAACGCTAACGGCAATAGGTT 8304 30 100.0 36 .............................. TCGGCCTCAAAACGTTTCTTGAGATACTGATGTTAG 8238 30 76.7 0 .C...C..........C...AA.....CC. | ========== ====== ====== ====== ============================== ======================================= ================== 32 30 99.3 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AACGTGCCCGCCTTGAGCGCCAGAAAATCGAGCAGGAAATGCTGGAGCGGAAGAGACGCGAGGAAGAAGAACGAGCAAGGCTGGCCCTCCTCTCCCCCGAAGAACGGCTTGTGGCCGAAATTGAGCGGCTGACTGACAGCGAAACGGATAGGCAGCGAAGCAAGGATAGCCTTTACCAACAGGTGATCGAGCAGCAAAACAAACAAGCCGCCGTTGCGTTGCAGGCGTATTGGAAACGCATCAGAGAATGGGGAAAAGCCGTTAGCAAAAAGCAAAAGCAAAAAATGGACAAACTTCAACAACTGTTGGAGGAAAAGTGAGGGTCTTGCGATTGTCGTCGACCCCCAATCGTGCAAAAAAACCGGGGGATCGACGACAATGTTTTTTTGTGCCGAAATCCTACAGCCATCACGGCTGAGGTTGTATTGACAGAATTTTTGAAACGTGATATTCTAGAAACAACCCAAAGGAAAAAGCTTGATTTGATGCGCATGGTTTGG # Right flank : TCTCCAACTCCCGTCTCCCACCCATATTTGAATCACGCTTTCATCCGCACAATTTTTCTCTTTGTGTGCTGTCTTCGCTGGCAATATGGAGAAGACCCGCCATCTTCCCTTGATCCTCGCCACGCGCAAAACTTCTTCTTCGTTCTGTTTTTCTCGCGGCAGCTTTGTTCGATGCGCTATACTTGATAGAAGGAGCAACATTTGTTTGCTTCCAGATGGGCGTTTGTTTTTGCCTTTTCACGATGGGTATAGCCAACAAAGGGAAGGGGAACGGTGATGCGGTGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAATCACCGATGTGCCCGGGGTAAGGGTGGGGCACGTGACGATTCGGGAAGAGATGGACGAACGGACGGTGATCCGCACCGGGGTGACGGCGGTGCTGCCGCACGGGGGCAATTCGTTTTTGGAGAAAGTGCCTGCAGCTTGTTTTGTGTTGAACGGGTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 30-355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHZ01000027.1 Geobacillus thermocatenulatus GS-1 contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 30 37 100.0 38 ..................................... AATATGTGCAGCGACTTCATCAATCACTGATTGAGCAT 105 37 100.0 35 ..................................... AATTAGAGTGACAACAAAGGCTGTTCCAAAAATCA 177 37 100.0 34 ..................................... ATGCGAATATACGACAAAAAGAAAGAGTTGAAGG 248 37 100.0 34 ..................................... ATTATTGGTCAATGGTTGTATCAGCAGGAAAATG 319 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 36 GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Left flank : TCCTTTCTCCGCCATTCTGCCGCGGCCATG # Right flank : CAAATTTGGTCAGGCCAAGCAGGAATTTGCTCCTTGCTGTCGAATTTATGTTCATGAAAATTGTTGCTTCACCTTTTCTACATCTTCTTGAAACTTCTCATGTGTTTTCGCCAGCACTTCTTCAAAGACGCCGTTGAGCCGCTGCTCGAGGACGGCGATTCCTTCTCCGGTGATTCCGCCTTTGACGCATACTTTTTCCTGCAGTGTTGGCAATGTGTACACATTCCGCTTGAGAAGTTCCCCAAGACCGATGATCATATCGGTCGCCAGCATCGTCGCCTGTTCCTTCGTGATGGCGGTTTTGGCCGCTGCGGCGTCGATGAAGCGCTGCAGCAAATAGCTGAAAAACGCTGGACCGCAGCTTGAGATGTCGGAAGCGACGCGGGTGATGGCCTCATCGATATACACCGGCGAGGCGATGCGCCGGAGAAGATCATCGATCGTTTGCCGGCAGTCGGCCGAACTGCGTGCCCCGAAGGTGACGAGGATGCTGCCGGAGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.20,-15.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 2665-105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHZ01000022.1 Geobacillus thermocatenulatus GS-1 contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 2664 28 100.0 36 ............................ TCGAGTATGAGCGGATCGGCAAGTCCTGGGATGTTC 2600 28 100.0 37 ............................ TGCGCAAGAACAACCGCCGACATCGACGGAGACACCT 2535 28 100.0 36 ............................ TGAAAATCTTTAGCCGCAATAACAGCGTCTAAAATT 2471 28 100.0 35 ............................ TGCGTCTTGATGGATCATCAAGCCATCTACAAACT 2408 28 100.0 38 ............................ TCGACAAAGCAAAAACGCCAAGAGCGTACGGCAAAACA 2342 28 100.0 36 ............................ TCCTGTTCGCGTGATCAGAAGGCTTCGACCTAGGTA 2278 28 100.0 36 ............................ TTATATCAATGATTGTTTTTCTATGTTGTCTATTTT 2214 28 100.0 36 ............................ TTGATTTTTGTGATTTCCGCAAAATCGATGCTGGAA 2150 28 100.0 36 ............................ TTTGATTGGTTTTATGAAGTGGTTCGTGTAGGGGGA 2086 28 100.0 36 ............................ TGCGTCTGATCCAGTGTCCGATGATCCGTCTTTACC 2022 28 100.0 37 ............................ TTGTTTTTGGAGTTTCTGCATCGCTCGATATATCCGC 1957 28 100.0 37 ............................ TATCCGAATCGGCCGGAGCAGTGATCCGCCGACGACC 1892 28 100.0 38 ............................ TACTTTTGTTGTCCGGTTTGTGACTCCTTTCGAATTTT 1826 28 100.0 37 ............................ TCACTTTCAGAGTAAATACAGCCCACTTGAGGAGATT 1761 28 100.0 39 ............................ TTTAATATACACAAGAGAGCGGCAAGCGCATCGACCGGA 1694 28 100.0 39 ............................ TCGACGAACCTTATTAATTATTTTTTGAACCGTGAAATA 1627 28 100.0 38 ............................ TCATTGCTACACATGGCTAGCCCGGACAAAGCAGGAGT 1561 28 100.0 36 ............................ TAAGTACGAAAAATATGGTATCATATGGCGTGAAAG 1497 28 100.0 38 ............................ TAGACAAGATCATTCACGCGTTCGACCCGCTGATCGAA 1431 28 100.0 38 ............................ TGGAGCTGGATGGCGACAACACACTTGTGGCCGTTCCG 1365 28 100.0 37 ............................ TAATACGATTTTGTTTAGACGAACTATTGCGAGAATC 1300 28 100.0 39 ............................ TGATTTCAGACAACAGTAATACTCATTGCAATAGCAACA 1233 28 100.0 36 ............................ TTGCTTGCGATCAACCAAACGATAACCGGGCGGAAT 1169 28 100.0 36 ............................ TCCAAACGTCAAATACCAAAAGCGATTTGTAACTGC 1105 28 100.0 35 ............................ TTTATTTGAAATAAACTATATCCTTCAAGGAACGC 1042 28 100.0 37 ............................ TGCGACTCCCTCACACGAAATACAACGTTCCATTTAT 977 28 100.0 39 ............................ TCTTGTAGGCATATATGAACATTGTGACCCTAAAAAAAG 910 28 100.0 38 ............................ TACAACTTTCGCCATCACTCCCCGACCTGTGAATCTCG 844 28 100.0 36 ............................ CATTTAACGATATTTGCAATTACAACGTTTTTATGG 780 28 100.0 37 ............................ CCTGACCGAAGAATTGGAATTGGATTTTGAAGCAAAG 715 28 100.0 37 ............................ CTTAGGTGGAATTGCAGGTGCAGCAGTGGGCGGAAAA 650 28 96.4 37 ..................A......... CCGATATTTCTATGTCTAGTCTATTTAGCAACTTTAA 585 28 100.0 36 ............................ CTTTCAACCGTCTTTCGTGTTTTCGGCGTTTCTTGC 521 28 100.0 38 ............................ CCGCGATCAAGTCATACACATCCGACTAGGACAGTATC 455 28 100.0 37 ............................ CAAGGAATCCATCATTATCTCTAATAACATCCCCCTC 390 28 100.0 36 ............................ CAAGCTTGTTCATAAGCCGGCAATGACAAACCGTGG 326 28 100.0 37 ............................ CTATGATGTCCTGGGATCGTCTTGCAAGACGTAAAGC 261 28 100.0 38 ............................ CGCGAACCGGCCGGTCATCATCATCGAGCGTCAACACC 195 28 100.0 35 ............................ CCAATCGTCCGGAGCGCAAATTGCTGCCTCATTCG 132 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 40 28 99.9 37 GTTTAATCTGAACGGAGAGGGATTTAAA # Left flank : GATGAACGATATAAACCGTTGAAAGCGTGGTGGTGAACCATGTTTGTTATCATTACGTATGACGTAGCGGAGAAGCGGGTCAACAAAGTTTGCAAAAAATTAAAGGAATATCTCACTTGGACGCAAAATAGCGTATTTGAAGGGGAGATTTCGAAAAGTCTGCTGATGAAGTGCATGTATGAATTGGAGATGATCATCGATAAACAAGAAGACTCCATTTACTTATACGAAGTAGAAAACCCGAAGAATATAAAAAAGCGGGTATTTGGTCAGGAAAAGAATTTTGATGAGTTGTTCCTCTAAGCTTTAAGAATTTGCAGTGAACCGCATTTTAGAGGATGAATGGGAGAAATCTTGATTTATCAAGGGCAGTGCTTCATTATTTGCGTAACATTAAAAACACGATTATCACTTTACTGCAAAATACGGTATAATTGATGCGTAGGCATTAGCGTGAATTGCTTGCTACATCAATAAATATTATTTTGTAACTGATAGGG # Right flank : ATGTCGGAAAAATTGTCATCATTGTTCGCCGACTCTACGTTGTTTAGTGCAAAATAAAAATACAGAGTTCTGCAACGAAACGTGCAGAGCCTAAGGCAAAGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTGAACGGAGAGGGATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1932-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHZ01000044.1 Geobacillus thermocatenulatus GS-1 contig_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1931 37 100.0 34 ..................................... CCCTTGACACTCACAAGACGCTATCGAGCTTCAC 1860 37 100.0 36 ..................................... ATGATTTCATTATGAATGACGTTCTGGTATGCTACC 1787 37 100.0 34 ..................................... TCTCCATGTCCATCACACCTTTTCGAACCGGACG 1716 37 100.0 34 ..................................... TGTGCTAACGGAAAAATTGCGCCGACAATCCGGC 1645 37 100.0 33 ..................................... GAGATAGCCCGGATCCATTTTGGCGCGCAACGG 1575 37 100.0 35 ..................................... AGCCGATCGAGGTTCTGTCCGCCCGAACAGGACGA 1503 37 100.0 35 ..................................... AAAGACGGTGGCTATCAATTCGAATTCATGCCTAA 1431 37 100.0 36 ..................................... TTAAAGCCGCATGATGCGCTTGCTAACCACGTTGAC 1358 37 100.0 35 ..................................... TTACCCCGAAACATCGAGAACGGATCGGACCGGCC 1286 37 100.0 34 ..................................... ATCACTCTTGTGTATAGCCGCCCCGTTCCATCGC 1215 37 100.0 34 ..................................... ATGCTGTTCAGCGCTTCTCGGATCGCCTGCTCTA 1144 37 100.0 34 ..................................... CGACTGTCGGTTTTCCGACTGTCGGTTTTCAACC 1073 37 100.0 38 ..................................... ATCATCTTGGCCTGGATCAGCTCGTCCATGAACGTGAC 998 37 100.0 34 ..................................... TATTCTGATTACGCCCATGCTGTCACCCTTTCCT 927 37 100.0 35 ..................................... CAGGAATAGTTCATCGAGGCAGAACCGTATTTGGT 855 37 100.0 35 ..................................... TGAAGAGGAACGAACGACATTAACGGTCGTTGAGG 783 37 100.0 35 ..................................... CCGGTTCTTCAAAGAACATTTTGTTTTTTTCATAA 711 37 100.0 34 ..................................... CTGTCTTTCAATAATCACATCCAACTTCTTTACA 640 37 100.0 35 ..................................... AAGTGAGGTTTTATGATAAATATAAGGAGCGTGTC 568 37 100.0 34 ..................................... AGAGAAGAGCAGGAAAGAGTGAAAGAGGATTTGC 497 37 100.0 35 ..................................... AACAAATGCCAAAACTCATGGATGAAGCAATGCGG 425 37 100.0 35 ..................................... CGTTTTCACGCCTTTTATATTGAGTCAAAGACATG 353 37 100.0 34 ..................................... GTTAAACATCTTACATTCCCCCTTGCATTTGTGC 282 37 100.0 37 ..................................... ACAATAAATCTCATCTCGTACCCAGTCACGTTTCAAC 208 37 100.0 33 ..................................... ACATCAAAGAGCTATACAACGATTCCAGCTCCC 138 37 100.0 35 ..................................... ACGAGATTTTTAATCATATATATCCCAGCCAAAAC 66 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 100.0 35 GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Left flank : CGATGTAGAAACATTAGAACCAAGCGGTCAAAAACGGTTGCGAAAAGTGGCGACCATTTGCCAAAATTTTGGCCAGCGGGTGCAAAAATCAGTGTTCGAATGCAGCGTCAGTCAAGCGCAACTAGAAGAAATGGAGCATCAATTGTTGCGCGTCATTGACTTGGAAAAAGATAGTTTGCGGATATATACATTGTACGGCAGCCGGTCAAAGGCGGTTCGTGTCTATGGAAAAGATTATTACGTTGATTATAATGATCCCATCATTTTGTAATGACAAAGATGACAAAATGCCGATGATATGTGCGGCAAGAAGAGAATGATGCGCGAACATAAAGCGATGCTGAAAAATAGGGGGGATCGCGATGGGCGGAAAAGCTGGTTATAAAGCCGAAGATGGGAAATGGATCAGTGATCATTGCAACTTTGATCCAAACGGAATGTGTAAGTTCGCGTTTTTATATCTTGAAATGCGCTCAACACAAGATATCTAAACGCGGGCG # Right flank : CATTGCTCGGTCAAAGGTGACGTAACGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.40,-15.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 11056-11680 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHZ01000051.1 Geobacillus thermocatenulatus GS-1 contig_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 11056 30 100.0 37 .............................. ATAAACTTCCTGTTATACCCAAACCGTACAAGATTTG 11123 30 100.0 36 .............................. TTCTGGATTGTGCTTGTCGTCCTGCTGTACTTAGTG 11189 30 100.0 34 .............................. TATAGTGAGTATTGCAATACTCACTGCGACATTG 11253 30 100.0 38 .............................. AATCCGAATGTCGAGATGGGCGATAACGCCCAAAATGG 11321 30 100.0 37 .............................. CTAATCTCCATTTCCCTTACCTCCTGACGCTTTGCTC 11388 30 100.0 36 .............................. ACGTTAATACTATCACCACTTGCGATCGGTGTCGGG 11454 30 100.0 35 .............................. CCCAACAGGTATTTAAGGTGAGTATCCCCTCGCAA 11519 30 100.0 35 .............................. ACGTCAAATTTGCCGCGCAACACCGTAAACCCATT 11584 30 100.0 38 .............................. GGTTGAACCGCTCTTTCTTCATGGTAGGTGTGTCTTTT 11652 29 90.0 0 ...................-T........G | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 99.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGTTCTTGCATGAAGCCACTCTCCTTTGGTATGGCTGGCCCCGCCTTCATTATGCAGATGACCCGCCAAGCAGACGATTTTGATGTCGTCTCAAGTTTGCCTAGCACCAAAGGAATGGAACAGGGATTATAGCAAGCAAGGCGGAAAGAAGTAAAACAGGGGAGGAAAAAGGTCGTCAAAAAAGAATCGAGGGAAGGACGCTCGACGTGGCGAAGAGAATGCTGGTGAAGGACTGGAATATCGACGCTATCAACGAACTGACCGGACTGCTGGTTGAAAAAACAAACGAGTGAAGAAGCAAACCATTCTCCTCAACCTTATATTCCCATTGTCGTCGACCCCCAATCGCGCAAAAACCCCTGGGGATCGACGACAGTGGTTTCGGGCTCCCTAAACCTACAGCCATCGATGACGAACCTTATTGACAGAATTTTTGAAATCTGTTATTCTGAAAGCAGCGCTAGATCGAAATGTTTGATACAACAAGCATTTTTGGGGGG # Right flank : GTCCGTTGTACCCTTTGCGAAGATTGATGATGTATGGCGAAGCGGCATCTGTTGTCTATGACCGCAGAGGCGTGGTGTCGCGCTTGCTTGACCCATTGATAGCGAATCCATTTGATAGAAAAGGACAACGCTCGATCACGAGGCGTGTTTCTGGCCGCCATGCTTCCCCGTCTGGCTTTCGAAGCATCAAAACAAAAAAAGACCCGCCCGCTTGTCTTGGCAAACGGACAGGCCTTTTCGTCGCGTTTTTCGTTTCCTCTTGCTCGACGCCTTGTCGATTACGCTCTTGCCATGCCGATCGAGGCGTCTGGCGTTTTGTAGGATGAAGCGTCGTTGTTTTCGTCTTGATGGTTGTCGCTTGGCGTCGTCGAATGGTCGTCAGCCGATGGTTGTTCATTCGCTGGGTTTTCGTCTGTCGGCGCTGTTTCGTCACTTGGGATCAATTCTTTTTCTTTGCTCGTGGCGGCGCGATCGCTTCCCGTTTTGTCTTCCGCTTTGTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1162-674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFHZ01000093.1 Geobacillus thermocatenulatus GS-1 contig_93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1161 29 100.0 37 ............................. TGATCAAGTGTTTTATATCATTGATCGGGCGGTGATG 1095 29 100.0 36 ............................. TGCTGTCGCGGCTTGTGTCGTACTAGTGCTTGTAAC 1030 29 100.0 38 ............................. ATATGGACGATAGCCGACCGTGCAAATCGCTTCGCCGA 963 29 100.0 38 ............................. CAATCTGCCCGACTCTTGATCGGCCCACCCCAATCTTC 896 29 100.0 36 ............................. GACGATATTATTCGTTCAGCAATTCGTGATGCGCAA 831 29 100.0 35 ............................. AATCAATAGGCTCGCCGTTCTTGTCTAAAATCCTC 767 29 96.6 36 ............................G GGCGCTCAATGTGTTCCGTATGGAGCTGTTGGGAGC 702 29 86.2 0 ....G...................AC..G | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 97.9 37 GTTTAATCTGAACGGAGAGGGATTTAAAT # Left flank : TCTTGAGCTGGCAAGCCTATGTATTTTTTCTTGCACTTCTCTGCATTTTTTGCTTGCAAAAAACATA # Right flank : GCCGCTTGTTTGCAGCGGCCTTAGTTGAGCACTCCAATGAGCGCATCCTTGGTATCACAGTGAGGCGCTAACTAATCGCCACTCCTGCACTCGCATATCCCGTGACGGAAGCGGCAATCGAAAGGCCGGAAGTGGTGGTGAAAAACGCCATGAGCAGCCGGTCGCCAGCATTGACAGGCACGTTTAATCCTGTGACGATGCCGCTGGCGTTTTGGGCTAGGGAGATGGGAAAGGTGATTGATGGCGTTAATGTAATGAGCGTGCCTGGAATAGGCGAAAATACGTTGCTGGACGGAGAAGTGGCGATATACAATTGGGCGCGGATCGTAGCCGTTCCTAAAAGCGCTGTGCCCGCTGTGGCGGAAAAATTCGCTGCGATAGCAGTAATGATCCCTGAACGCGGGATGGTAAAGGAAAAATTCGATGTCCCGCCAAGGTTTATGGTTCCTCCCACTAAACTGATGCTTGAAGCAGCATTTCCAAATCCGATCAAACTTGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTGAACGGAGAGGGATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //