Array 1 963395-960669 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048738.1 Haloferax alexandrinus strain wsp1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 963394 30 100.0 37 .............................. TGCCCGTCGATGAACGTCGACTGGTCGAATTCGATGC 963327 30 100.0 34 .............................. GGCGGCCGCGTGCTCGGCGGCCGCGTCCGCGGTC 963263 30 100.0 36 .............................. ACCGAGGTGTGGACCGCAGAGCGAATGATACCGAAG 963197 30 100.0 37 .............................. CGCCGTCGGTCACCGCGACCGGGTCGCTCTCGTCAGA 963130 30 100.0 35 .............................. GGACTCTCCCCGCATCGGTGACTGGTGGTGGTGGC 963065 30 100.0 35 .............................. ATCAATGAGTTCCTCGCCAACTATCCGATTCTGTT 963000 30 100.0 36 .............................. GAACTCATCATTCACCACCCCACGACAGCTTCGCAC 962934 30 100.0 38 .............................. GGCACCTACGAGTGCCCCGGCTGCCCCACCATCGAAGA 962866 30 100.0 36 .............................. ACCCAGACAGGCACAGAGAGGGGAAGTACTCGTGCG 962800 30 100.0 36 .............................. AGTCGGTCTCTATCGAGGTCAGCAACATGCTCGTCA 962734 30 100.0 37 .............................. GACTACTCGACGCCGCCGGGGCCGCATCTCCAAGAAG 962667 30 100.0 38 .............................. CTCGACCGCCTCGCAACGAAGTGGGGCGTTCGGTCGGT 962599 30 100.0 40 .............................. AACGGCAAATCGGTAAGTGCAGACGAGCTATCGGTCAACA 962529 30 100.0 35 .............................. GCTCACCGACGCCGCGGCTCTCGCGGCCGGCACAC 962464 30 100.0 34 .............................. GTGAATCGAGGTTGCGGGCGGTGTGCGGACTGTT 962400 30 100.0 33 .............................. GACTTCGGAACTAACTGCGTAGCCTTCCATTGT 962337 30 100.0 37 .............................. TTAATTACCTCATGCCCGTTGTGCCACTCTCTAATTG 962270 30 100.0 37 .............................. ACTTAAAGATGCAAACAAAGCGGTGTTAGAGAACGAC 962203 30 100.0 35 .............................. GACGAATGGGAGCCGACAGAGGCCAACGGCTTCGA 962138 30 100.0 35 .............................. TTACACATTATCAGCATCAACGGACGGCGGGCCTA 962073 30 100.0 34 .............................. GCCATCGGAGTAGACTGCGACCTCGTCGTCGCCC 962009 30 100.0 36 .............................. TGATTCGTGAGTGTCATGCGTCGATGTAGTAGGGTT 961943 30 100.0 37 .............................. GACTAATGGTGTACTACCGTGAGACCTCGGACGGCAA 961876 30 100.0 35 .............................. GCCCACTTGCACATCCCATGCGTGAACATCAACAG 961811 30 100.0 36 .............................. GGTTCGCTTGTCGATGCGTCGGAGGATGCGGACGGC 961745 30 100.0 35 .............................. GTCCATCAGGTCCGCATCGAGGTCGACGCCGTGCA 961680 30 100.0 35 .............................. TCAACCTCGTCCGAGTCGTTGCGGTGGTCCAGCTC 961615 30 100.0 36 .............................. GTTCTTTGAGCTGTACGGGCGGCGTGCGACCATCTT 961549 30 100.0 36 .............................. GACTCGCTCTACGAGATGACCGCGAGCATCAACAGT 961483 30 100.0 36 .............................. TCGACATCCGAGTTTGTGTCGATAGTCACGACACCA 961417 30 100.0 35 .............................. AACCTCTGCCGAGGACGGCGCAGGGAGTGGCCTCG 961352 30 100.0 33 .............................. GCCCATAAGTCGGATGATTACGTCGGTGTACGT 961289 30 100.0 36 .............................. TATGTCAACTGCCACACGCCAAACCTATCCGTGCAA 961223 30 100.0 34 .............................. TACCTCGGGGAGAACGAGAACGGAACGCGGGCGC 961159 30 100.0 34 .............................. CGCGTCGGCGCGACGAACGGCATCGAAACCGAGT 961095 30 100.0 37 .............................. CAAGCGTCAGACATCCCCCAACTCGACGCCTCGACGG 961028 30 100.0 37 .............................. TGCTGCTCGCCCATCTCATGACCCGACGAGTCCCAGC 960961 30 100.0 36 .............................. GGCGCGAGCAAGGACGAGTATCTCGTGCTGGAGGTG 960895 30 100.0 36 .............................. GTCTGGACAGTCCGCACCCACTCGTTTGGGAAGATG 960829 30 100.0 36 .............................. GTCTGGACAGTCCGCACCCACTCGTTTGGGAAGATG 960763 30 100.0 35 .............................. CCGTTGCCGAGAAGCGCAGCGACACGGTGCGCGGC 960698 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 42 30 100.0 36 GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Left flank : ACGCTCGAACGAACCGTCGAGCATCCGAAGCTCAACCGCAAAGTGAGCTATCAGTACCTGATGCGGCTCGAAGCGTACAAACTCAAAAAGCATCTGCTGACCGGAGAGGAGTACGAGCCCTTCGAACGGTGGTGGTGAAATGTACGTCGTGATGGTGTACGACCTCGAAGCCGAACGGACGCACAAAGCGCTCAAACTTGGGCGACGCTATCTGACGCACGTTCAGAACTCCGTGCTCGAAGGCGAGATTTCCGAAGGTGACTTAGCGACGCTTCGAAACGAGGTCGAAGACCTGTTGAAGCCGGGTGAGTCAACGATCATCTACGAACTGTCCTCGGACACACTTCTCGACCGCTCGGTCTACGGCGACGACCCGACCGACGAGAAACGCTTCCTCTGACTTCCGTCGACCCCCCGGTCGGCTCGGGTTACTGACGGTCGACGGAACTTCTTTATCGTAGTCTTTCTTTAGAGGGCCTGTGTCCGTGATATCGGGCATG # Right flank : GTCTGGACAGTCCGCACCCACTCGTTTGGGAAGATGGTTTCCTCTCTCGATTAGGATTGAGCGGTCGGCTTGACTACGTCGAGCGAAACCTCGTCGAAAAATGGTTTCACACTCTCAAAATGCGAGTCGACCGCTTCCATAATTCGTGGGTGGGCAGTCACGGAAGCGTCCGCGAGTGGTTCATACAATTTGTGCAATACTACAACTTTCAAAGACCGCATCAAGCGCTCGACGGACGAACGCCGGTTGAGGAGGTCACTAACTAGACAGTGCCGGGCTCTGCGGTCAGTCGTCGGCCGGCGACGCGCCCTCGGGTGAGTCGGTGTCGCCGCCCATAGGCGAGACGGGGGTGGCCGCGACGGAGCGGGCCGACCCCATCCAGCGCTCGACGTTGGCCGAGACGTAGTCGCGCGCGCCGAAGGCGACCGCGCCGCCGACGCCGATGGCGAGGGCCGCGGCGATGCCCCACGCGAACGCCTGCGCGATGGTGAACAGGATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 973425-972928 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048738.1 Haloferax alexandrinus strain wsp1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 973424 30 100.0 36 .............................. GCGACCAACTGGAACGTGTCGCCGTCGACGACCGTC 973358 30 100.0 37 .............................. TTCGAGACTGGACGATGGACCCACTCGTCTCGGAACC 973291 30 100.0 37 .............................. CCCTCCAGGAGCGCGCGGTGCTCGTCGCTCGCGTCCT 973224 30 100.0 37 .............................. TTCCAGAGTAGCGACCTCTGGGGCTTGGTCTACGTCG 973157 30 100.0 37 .............................. CTCGCCGGTCTCCCCGACTCGCCACGCCTCACGGATG 973090 30 100.0 36 .............................. TCCCGCGAAGTGTAGCGGGCCGAGTAATACCATGAA 973024 30 100.0 37 .............................. TGGGTCGAACTCGCAAATGACGGCTCCACGTTCACGC 972957 30 90.0 0 ...............C..A.C......... | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.8 37 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CGTCGTCGGCACCTCCGTCGACCGCATCCGCGAGCGCCTCGTCGGCGACGTCCACACCTACGGCGGCCGCTCGACCATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGGGTCGACGACCTGCTCGACTCGGCGTGCGAGCGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAGGAACTCACGGGCGAGGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAGCTCTGGGTCCGCAAATACATCGACCGCGAAGGTCGCGGCGTCGAGGAAGGTCCCGTCGGTGCGGCGGAAGCCGAAGACGCGCCGCAACCGGCCGACTGAGTTACTCGAACCACTCGATGGACTGTCCAGTCGTGTGGAACTGCGGTTCGTTTCCGTCGACCCCCCGGGGAAGCGAGGACTACTGAGGGTCGACGGAAACGTTCTTTTGAATTCGGTTCGTACGCGACGTTACGCCCGTGATTTCGGGACG # Right flank : AGAGAAACCACCCAACGAAAACAATCACCCGAACAGTCAATCCTGGTTTCAATTATTGCTGACCCGTCAAACTACGGGCATAATTTTATGTCGGGGAGCAAACAATCACGGGTACAACAATGAGTAGAGAAGGAGATATCGGATAACGTGCGAATCATGGCACACTTATCAGCGCGTTCCGATGCTGCGTATCAGAACGATTACCATCACAAGATTCGCGGGCGAATCTGGAACGCGCTCGATGGGACGGCCTACGGAGAACGACACGATTCCGGCGAGCCGCCGGGGTTCGCTTACTCGAATCCGTTTCCGCCTCGAAATATGCGGGAAGGTGACGACCGGAAGTTACTGGTCGCGTCGCCCGACGAGGAACTACTCGCAAACGTGGCGGCGAATCTGCTCGACGACCGAGAGTTCAACGTCGGTGAGATGCCGTTTCACGTCGACGAGGTAACATCCCTCGAACCCGACGTGGGCGAGCCTGGGACCAGGGGGACGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1258188-1256909 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048738.1 Haloferax alexandrinus strain wsp1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1258187 30 100.0 35 .............................. CCGTTGCCGAGAAGCGCAGCGACACGGTGCGCGGC 1258122 30 100.0 36 .............................. GTCTGGACAGTCCGCACCCACTCGTTTGGGAAGATG 1258056 30 100.0 37 .............................. CTCGAAAAACAGGACGTAGCCGCCGGGGACTCCACGA 1257989 30 100.0 36 .............................. TGAGTCGATTTTGCCGAGGTCGTTGGAGTCGGTCAC 1257923 30 100.0 36 .............................. GAACCGTTGCGGACGGCGTTACATCCGCGACAGGGG 1257857 30 100.0 38 .............................. GGCCGGTAGTCTGTACGGGGCACTGGCGAGCTTCGCGA 1257789 30 100.0 37 .............................. TTAGTTGACTTACTGGCCGAACTGGTTGTTAACGGGA 1257722 30 100.0 37 .............................. ACTGTGGGGAAGAAGCATGACTAAACGCAACAAAACT 1257655 30 100.0 34 .............................. CACGTTGAGGTGTCTGCATCACGAATCTCCGCGG 1257591 30 100.0 35 .............................. GACCAGCCGGCAGGGACGCTTTCGACGTGGACGCT 1257526 30 100.0 33 .............................. AGCCGCTTGAGGACGAGCGCTCGCTCCCAGACA 1257463 30 100.0 37 .............................. GGACTCATACGAGGGTCCGTACGTCGACGCCCTAGAG 1257396 30 100.0 35 .............................. AGGCGACAGGCCCCGTTGGGTCAATCACAATCAAA 1257331 30 100.0 35 .............................. ACCGACGTGATTTTCTCGTCGGGGAATATCGAAAT 1257266 30 100.0 37 .............................. ACTGAGGTCGCTTGCAAGTACCATTATTGGATGAGTT 1257199 30 100.0 36 .............................. ATGGTTAGGCCACGTTGAGGGTGAAGTCTTCTTCGT 1257133 30 100.0 34 .............................. CGTGGTCCTCGAGACGGAGGACTATCGGACGCTC 1257069 30 100.0 37 .............................. GATTGCGAATCGTTTGTCGTCGTTGTCAGCCATTATC 1257002 30 96.7 34 ...................G.......... GGCACCTACGACCGCCGCTACAACGACGACCCGC 1256938 30 80.0 0 .......G.......G...G..A..A..T. | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 98.8 36 GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Left flank : CAATGGTACTCCTGAGTGAGTCGTTTCCTGATCGTGGTATCGCTGTTCGAATCGTCGTCGACGACGCGGCTGACAGCTATCGTGTTGAATACACCCCGCTGTCCGGAGGTGTGGTAACCGACGAGTGGACTGTGTTCGGTGGGGTGTCGGAGTGCAAACAGGCTTGTAGCTGCAACACGTGGGAGATTCTTAATGTCATGATCCCGAACTGGCAACTTCTTCTATCTGGCACTGTCTAGTTAGTCGCCTCCTCGACCGGTGTTCGTCCGTCGAGCGCTTGATGCGGTCTTTGATAGTTGTAGTATTGCGCAAATTGTATGAACCACTCGCGGACGCTTCCGTGACTGCCCACCCACGAATTATGGAAGCGGTCGACTCGCATTTTGAGAGTGTGAAACCATTTTTCGACGAGGTTTCGCTCGACGTAGTCAAGCCGACCGCTCAATCCTAATCGAGAGAGAAGCGTCTGGACAGTCCGCACCCACTCGTTTGGGAAGATG # Right flank : GAAAACTCGTCGGGACGAAAACACCCGAAAGAAACAGACTCGGGCGCTACGCCGCCTCGGCGTACATCGCCACCAGCTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGAGCGGTTCGTCCGACCCATGCGGACGGCTTCCGCGGGGTCGGAGACGAGTCGGGCGAGCGCCCGCGCCAGTTCCTCGGCGTCGCCGGGTGCGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATGCTGCCGACGGGCGTGGTCACGATGGCGTTGCCGCCGGCCATGCCTTCGAGCATGGCGATTGGAAGCCCCTCGGCGTAAGTCGGGAGGACGAACACGGTTCCGCGGCTGATGAGGTCGCGTTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACCACGAAGTCGAGGCCGGGCGTGGATTCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 3194022-3193333 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048738.1 Haloferax alexandrinus strain wsp1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3194021 30 100.0 37 .............................. CTTCGAGGCAGCCATCATCCGAACACCACCACGAGGG 3193954 30 100.0 36 .............................. GTCCCCGTCGGTGCTGTCAACCCGATGACCGAGGCG 3193888 30 100.0 38 .............................. CCCGGCCCGCCATCGGCTCGCGCGCCGTTGTCGCTCGC 3193820 30 100.0 36 .............................. ATGTCTCTGAGGGGTTCTGATTGCCGCGACGGCCCC 3193754 30 100.0 36 .............................. GAAGACGTAACTGACCCCATCCGCGACCAGCCTATT 3193688 30 100.0 35 .............................. GAGGATAAAGACTACCTCCAATATCTATACGACAC 3193623 30 100.0 36 .............................. GAAGACGTAACTGACCCCATCCGCGACCAGCCTATT 3193557 30 100.0 35 .............................. GAGGATAAAGACTACCTCCAATATCTATACGACAC 3193492 30 100.0 34 .............................. CGTACACACACCAAACGCTCGTGGTACTTCAGCA 3193428 30 93.3 36 ...A........................A. TCAACGCCGTCTCAGACGGGTCCAGTCTCCAGATTA 3193362 30 83.3 0 ..C.............C.....A...GT.. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 97.9 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : GGGAGCCCAAGTCAACACCGACCCGGACGGGTGTGCAACGGAACTCGCGGTTGGAAACTCGCGGTACCTGCTGGTGGACGCCCAGAGTCGTTCCTACCATCCCGTGTTCGGCGTTCGATGAGCGACTTGCCTCAGGTCGTCACCAGTTGTGGTATCTGATTGCTCGTGAAATCTGGGTTTGAAAACGCTTGGGAGGAGATCTCAAATCGCGCCTCAGATAGTTTTAATGAATTGCGAAAGTTTCAAAATGATGACTTTCCCGATGACCCCCGGTACTGGGACCATCCGATTCGGGCAAGAATAGAAGAATTTTGTTACCGCTTATTGAACCCTGTACGAGATGATTAGACTATAATAGTTTGTCTATGATAGTCGATTCTCAGCAGGGGAAGAAGAGAAACTTCCGTCGACCCCCGGGGTTCCTAAGGGAATTGAGGGTCGACGGAAACGTTGATGTGAGTTCATCATGTACAGCCGCCCACATCCGGTAATTCGGATAG # Right flank : TCAGAGAGGTCGCGCCGCTCGCCGTCAGAGATCTCTACGGACATCAGCAGCGAAACATGACCTCCTTGGAGCGATGCCATCGCATCCTCGACGTCGGACAGCCAGGAGCGACAGAGCCACAGTTTCACACGACGACGAAGCCCGCGAATCACCTTAGACAACTTCCGGATCTGCATCCTGTATAGGAGGCTGGCCAAAGAGACTAGCCTCTGTGTTGGCCATCTCAAGATGCCCAGCGATGTGTTCGAACGCCCTCTCAACTTCACAGGGTTCGTACAACTTTGAGCAGAGGTTACATCTCAGGTACCACTCGTCCTCAATCTCAACAGAAGTCCCAAGATGTGCGTAATCCTTGGATTGGAGATACTCGAAATCGTACTCTTCTCGCGTTGACTCATCGGACACAGCCAACAGGTTGGAAAGTGCCTGGCGGAGTCTCCCGACCGGACCACCAGAACTATTCACCGTGAGCACCCCCGTGTCTGAATTGAAAGACTGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 3203364-3202012 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048738.1 Haloferax alexandrinus strain wsp1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3203363 30 100.0 35 .............................. TACGCGTCCCGACGAACGTCAACCAACTCCAACAA 3203298 30 100.0 37 .............................. TTGTTAATCGCAGGCGTGCCGTCGATATGGCCAATGA 3203231 30 100.0 36 .............................. TGAATATGCTGATAGAACCGCAGTAAAAACCGCCTT 3203165 30 100.0 38 .............................. CCGAGTGGTTGCCGGAGCTGATAGCCCACCGCGAGCGC 3203097 30 100.0 34 .............................. ACGACCTCGAAAAGCGATGCCGTCACGTGGGGCG 3203033 30 100.0 36 .............................. CGACGCGCGTCGGCGAGCTCAAGCGCGCGGTCTCTC 3202967 30 100.0 34 .............................. TCGAAGAACTCCATCAGCGGACGCAGGACGGCCC 3202903 30 100.0 38 .............................. GTTGACGAAATCGACGGCACGCAAGCCATCAACCGGAA 3202835 30 100.0 35 .............................. TTCTGACGTCTTAATCGACGCGACTGTCATGCTTA 3202770 30 100.0 36 .............................. TGCCGATATATATGAAGACCCAGACACTGGGTATAG 3202704 30 100.0 36 .............................. ACGCCGTTGTCGATCCAGCCGTCGGAGCCGTCGCCA 3202638 30 100.0 39 .............................. GCGGACTTGGTCGCGTCCGGGAACGGCTCTGGCGCGGCG 3202569 30 100.0 37 .............................. GTTTGGTAGTCTTCCATTGCAAGTAATCTTACAGGCA 3202502 30 100.0 35 .............................. CAATAGCTATCGTGCGGGGACTGTCGATAGCACAT 3202437 30 100.0 36 .............................. TTCGACGATGCCGGCCAGTGGCGTGAGTGGGAGTTC 3202371 30 100.0 36 .............................. GGACATTGCGGCGTCGCAGCCGTCGGTCGCGCAGTA 3202305 30 100.0 36 .............................. ACTCTCTCGACCTCGCCGTCGTCGACCGCGACCCGC 3202239 30 100.0 35 .............................. ACGTTGACGACCTCGTTCAGGACTTCCTCGATCTG 3202174 30 100.0 35 .............................. TTCTGAACCGTCGCTTTGTCCAAGGTCGTGGTATA 3202109 30 96.7 36 ......................A....... GAGGACTGGTCTGAGAGCGACGGCTGGACTGGAGGC 3202043 29 80.0 0 ..............-.G.C.A.A......G | TG,C [3202018,3202021] ========== ====== ====== ====== ============================== ======================================= ================== 21 30 98.9 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : ACACCACGGGCGAGCACGCACACGGGAAGCAACGTGAGACGTGGCTTCCCATCGACCTCGAAGCGCGAATCAATCGCTACGTTCAGGACGACGACAACGACATCGGCCCGAACGACCCTGTCGTCCAGCGCTCGAAGCGAACTCTCCAAGGCTGGGTCGACCGCGCCGCCGACGCAGCTGCGGACGCGACCGGTGACGACGACTACCGACGGGTGTCCAGTCACGATCTGCGCCGCTGCTGGGCACATCATCTGCTCGTCGAGGAAGGAGTATCGCCGCGAATCGTGATGGCACTCGGCGGCTGGTCCAGTTACGACGCTATCGAACCCTATCTCGCAGCGCCGTCAGAAGAGAACATCATCAAGTCGATGAGCGAGGTCTCGCTCTGAGTTCCAGAAACTTCCGTCGACCCCCCGGGGGTTCAGGAGGAATTGAGGGTCGACGGAAACGTTGATGTGAATTCGCCACGTACAGTCGCCTACCCCCGTGAATTCGGGACG # Right flank : GCGTGGACTTAGTGTCGATTGTGCCGTTTGATACCCCTCCCCCCGAACTATTACAATAATGGAGTTGAGATTGCACTTGTGCTTTCTCATCCGACCGAAAAACCCCAAAGCGGGCTGCGTTTTTCGTCTCTTTCCAGTGGTATCGAAACCGTGGTGATGGAAGTGATGCGATGAGAGTACTGATCGATTTGGAGGCAGAGATGGACGCGGCCTATGATACAGAGTATCACAGCGGACTCCGGAGGCGGATGTGGGACGCGCTTCGCGACACCCCGTACGATGAACATGGTACGGAAACGCCCGGGTTCTCGTTCTCCAACCCGTTCCCGTGGGGTGAGTTGGAGGAGGGCGACGAGCGCCAACTGCTGGTTGCCTCTTCCCGTGAGGAGCAGTTGGCACACATCGTCGCCGACCTGCTTGAGAACCCCGAGATACACGTGGGGTCGATGCCGTTCAGCGTGACTGACACGCGGGCACTCGATCCTGACGTCGGGCCGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 3238382-3236080 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048738.1 Haloferax alexandrinus strain wsp1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 3238381 30 100.0 36 .............................. GAACACTGCCACGCCGGACGCGGTGGTGGACCGTGT 3238315 30 100.0 39 .............................. ATCGTCAAAGCCGAAAACGGCAAAGAGTTCGAATACGGT 3238246 30 100.0 38 .............................. GGAAGACGCCGACATGGACAAGGCCGAGGCCCTCTATC 3238178 30 100.0 38 .............................. AATCCGCTCGGAGGGTCCCAATGAGTACATCCGAAACC 3238110 30 100.0 36 .............................. TGCCCGCGTTCGCCGTCGAGGACCAGAGCAAAGAGA 3238044 30 100.0 38 .............................. AATCCGCTCGGAGGGTCCCAATGAGTACATCCGAAACC 3237976 30 100.0 36 .............................. TGCCCGCGTTCGCCGTCGAGGACCAGAGCAAAGAGA 3237910 30 100.0 36 .............................. GGGAGTGAGACCGTCGTCAACATCCAAAAGCCAATC 3237844 30 100.0 33 .............................. CCGTATAGCGATGGGATTGCGCTCTATACAAGA 3237781 30 100.0 37 .............................. ACGCCCACAAGGGCCTGGCGTGCGTCGACGAGCTCGA 3237714 30 100.0 37 .............................. ATTGCGTGCTTGTCGAACGTCCTCGCGGAGGTACAGC 3237647 30 100.0 37 .............................. GGCTCGAGACGCCGAGTCTGCGAGCCACGGCGTGAGG 3237580 30 100.0 37 .............................. GGCTGACGCCGGACCCCGACCCAGACCCTGATCCGGA 3237513 30 100.0 39 .............................. CTGGCGAGAACTTCGACGTCGTCGAGCGCGTCTGGGGTT 3237444 30 100.0 37 .............................. CCGCGCCCAGGGGCGGCAAGACCTCCCCGGCGTCATG 3237377 30 100.0 33 .............................. CATCACGAATGTCACGCCCCAAAACGGCAAAAT 3237314 30 100.0 37 .............................. GGCAGCATCGGTCTGGGACTCAAGACCGACTGATTGC 3237247 30 100.0 37 .............................. ACCCAGATGCTCACCCGCGAGGTCGTCGCCTGCAACT 3237180 30 100.0 37 .............................. GACGACCGGGGCGAACTCGCGCGGCAGGCGCAGCAGC 3237113 30 100.0 37 .............................. ATATGTCACAAATCCCAGCGGGGACGCTCGACGATTA 3237046 30 100.0 36 .............................. CATCTGGGTTAGCAACGTCGAGACAAACCCAACAAT 3236980 30 100.0 36 .............................. TAATGCAAACGCGATTGTCTCAACATACTCTGCCGC 3236914 30 100.0 36 .............................. ACCTCGGAGATGGATTCGCCCGTCGGGAGGAAACTT 3236848 30 100.0 37 .............................. GACGCGGCGGTCAGCACGTGCATCATCGCGATGGACA 3236781 30 100.0 33 .............................. CACCTAAGGGCAGTTATCCTGAGCAGTGCATGT 3236718 30 100.0 36 .............................. TTCCTCATGGTTTTATCAAGCGATAAGCGCGTCAGC 3236652 30 100.0 41 .............................. CCGACCCGCCAGCGCCGCCTTGGGACGCGACGTAAACGGTA 3236581 30 100.0 38 .............................. TCCGTCTGGACACTCGACTTCGGAAGACACTGCATACC 3236513 30 100.0 38 .............................. AAGTTTTACGACTCAGGTTATCATCCACCAGCCGGCGA 3236445 30 100.0 37 .............................. GAGCGCCGAGTCCGTGGTCCGAGGCGACATTGAGGGT 3236378 30 100.0 37 .............................. TTGGGAGATGGCACCTCCGAACGAAGCGTAAGACCGC 3236311 30 100.0 35 .............................. AAAAGCCGGGATTAACGCCACGCTCAAATCCCGGT 3236246 30 100.0 39 .............................. CGGCTTGAGAAACTTGATGGGTCGTGGCAAACTGTTGGC 3236177 30 100.0 38 .............................. CGTCTGTCTCAAGAGTCATTGTTCTATCTCCTCTGCGA 3236109 30 76.7 0 ...............G.A.C.AAG.....A | ========== ====== ====== ====== ============================== ========================================= ================== 35 30 99.3 37 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : TTCCCGCTCGTCGGTGAGTCGCTCACCGACTTCCGCGGCGTCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGACGAGATTGCCGCGCCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGACCCGCTCGACTAGCGCTCTCGACGCTCCCCTCGAATTTTTCGGCGTGCGGCCGCGCCCCGTGGACGAGCCGACCGCGTGACGACTGCCCGAGTGGTTCTCGACACCGCCAGTGACGACCCGACGTTTTCGTCGACCCCCCGGGGGTTGCGGGTGTATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGTGATACACGTCATTGTACCCGTGAATTCGGGATG # Right flank : ATCAGGAGACGGCATTGCGATGCCCGTATTAGTCAATCACGTACTGAAATCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGGGTCACCACGGCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //