Array 1 616992-617801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINAT010000027.1 Escherichia ruysiae strain C11-9 c_000000000027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 616992 28 100.0 32 ............................ ATTGCCTGACGGGTAATCAAAATGCCGTGGAA 617052 28 100.0 32 ............................ ATCAAAAATCCGCACAACTACATTAAGTTTTG 617112 28 100.0 32 ............................ GGACACGCTGACCTGCTATCAGAACAATCCGA 617172 28 100.0 32 ............................ AGAGATGAAACAAAGCTGGTGGTCACAGATTC 617232 28 100.0 32 ............................ GAGAACAGCCAGATGCTATGGGATTCAGAAAT 617292 28 100.0 32 ............................ GGTAGCCGTACTCATTACGCAGCGGTTTTAAT 617352 28 100.0 32 ............................ GGCACGCGCTCCAGTTTGGTGGCTCTAATGAC 617412 28 100.0 32 ............................ ATTCATCATCGTATAAATCTTTCATAGCCACC 617472 28 100.0 32 ............................ AAGCGATTATGAGTCATGCGATAAATAGTTAC 617532 28 100.0 32 ............................ GCCCCGCCGGAGACGGGGCGGCAGCAAGGGAG 617592 28 100.0 32 ............................ AAGATAAGAGGCAAAGCGTTCAGTGGCATCAT 617652 28 100.0 33 ............................ ACCGAAACAGCCATGACCTGGCTTAAAGATCAT 617713 28 96.4 32 ...............A............ GCGAACGTCAAAAAGAACTGGTGGCAGCAGGC 617773 28 85.7 0 ...........A........T...C..T | C [617796] ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTATGACCGGGCAATGGGTGCACGTCCGATGGCACGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGACGGCGGCCAGGTCACCGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTCTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTACTGTAACTTATTGATAATTAATGCTGCTGGAAGGTAAGGATAAAAAAGGGTAGCAGCAGGGAAATTAGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAATGGTAGACGTTTGGTCATATCATGACGCTCTCAACTTCAAAACATTAGTCTTAGCACACAATAACAATTGTAATAATTGCGACAGAAATCAATTTCCTGCATAGAAATCAATGTTGTACTAATCCTAACGCCTTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGGGGGCGGGTGGAGTATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCTATTGCGAATACCACGGCATTAATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 626982-627429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINAT010000027.1 Escherichia ruysiae strain C11-9 c_000000000027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 626982 28 100.0 32 ............................ AGAAGACGAATAACAATGGGGTTATTGCCAAT 627042 28 100.0 32 ............................ CGACGTTAAGTCGGGCGCTTAAGAGGATATCT 627102 28 100.0 32 ............................ ACATCAAAACAATCACTGCACAGTGATTACTC 627162 28 100.0 32 ............................ CCACAGACCAACAATAAGGTCGGCGAAATTAC 627222 28 100.0 32 ............................ ACCTCAATACTCAAACAGGGATCGTTTCGCAG 627282 28 96.4 33 .............T.............. AGAATGCTGGCACTTAATCCAACAGGAAATCTT 627343 28 96.4 32 .........T.................. GCTAACGCGGAGATACGCCCCGGCTGCGGGTG 627403 27 85.7 0 ......A....C........-...T... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AACTGAGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCATATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCACGCAGTTCATCCGACCAGGATTGTGACTGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCCAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATAGGATAGTCTGCTATTATTCCA # Right flank : AATCCATACCCCAATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //