Array 1 249194-253121 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKSR01000004.1 Klebsiella pneumoniae strain EuSCAPE_IT233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249194 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 249253 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 249314 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 249375 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 249436 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 249497 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 249558 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 249619 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 249680 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 249741 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 249802 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 249863 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 249924 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 249985 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 250046 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 250107 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 250168 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 250229 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 250290 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 250351 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 250412 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 250473 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 250534 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 250595 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 250656 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 250717 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 250778 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 250839 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 250900 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 250961 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 251022 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 251083 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 251144 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 251205 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 251266 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 251327 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 251388 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 251449 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 251510 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 251571 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 251632 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 251693 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 251754 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 251815 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 251876 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 251937 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 251998 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 252059 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 252120 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 252181 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 252242 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 252303 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 252364 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 252425 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 252486 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 252547 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 252608 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 252669 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 252730 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 252791 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 252852 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 252913 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 252974 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 253035 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 253093 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //