Array 1 669572-669116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCQN010000001.1 Gluconobacter japonicus strain R71697 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 669571 29 100.0 32 ............................. TCGTTGGTCATCGGTTCTGGCCTTTCATCGGG 669510 29 100.0 32 ............................. GGGTTCAGCAGGCAGTTGACCGTGCAGAGGCA 669449 29 96.6 32 ...C......................... GCCGCAACGTGACCGCTCAGCTGGGTGCCAAC 669388 29 100.0 32 ............................. GAGTTCGACGGCAGAACCACGGGCCTCGGATA 669327 29 100.0 32 ............................. ATGCCACCCCAGAGCAGAACTTGAGGCGGGAG 669266 29 100.0 32 ............................. AGCAGGTGAGACGCATCACACCCGTGGATGAT 669205 29 100.0 32 ............................. CGTCCAACAGCCCGAACGATTTTCCGAGCTGC 669144 29 89.7 0 ..............C........A..G.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGTTCCCCGCACATGCGGGGATGAACCG # Left flank : TGATCGAAGACGTTCTCTCCGCAGGCGGCCTCTCCCCTCCCGAAGCACCGGAAGAAGCCATGCCCGTGGCCTTTGAAGACCCGGAAGGATTGGCCGATGCTGGTCATCGTGGTTGAAAATGCCCCACCACGCCTGCGAGGACGGCTTGCCGTCTGGCTGCTGGAAGTCCGTGCAGGCGTTTATGTCGGAACTTATGGCAGAAAAGTTCGGGAAATGATCTGGCAACAGGTCTGCGCCTATATTGACAGCGGCAATGCCGTCATGGCCTGGGCCGCCCCGAACGACGCTGGATTTGAGTTCGATACCTGCGGTGCAAACAGACGTTGCCCAGTCGATCTCGATGGATTTCGACTGGTCGAATTCGGCCCCGAAGCAGCCCTCCCCCTCCTGCCCGGCCCTCTTAATTCTCCCAACCGAAACAGGCGTTAAAAACCCTTTGAAAATCGGTAGATTTTTGAAGTGGAAAAATTCCTTTCTTAATCATAAACTTGCACACAAGA # Right flank : TCAGAATCAGATCTGTAATACCTGCACAAGCGTTACTACCCTTCCCACATATCCTTGCAGACAAGGAGACGCCCCATGAGCAAACTCACAAAAGAAGAACGGGACAGCCTACCTGACGATGAATTCGGGCTCCCTGAAAAACGGGCCTATCCTGTCGATACCAAGGCACGAGCACGCAATGCGAAAGCCCGCGCTACGCAGGAGCTAGAACGGGGGCTTCTCACACCGGAAGAGCGGGATGAAATTGACCGTGCCGCAGATCGAAAACTGAACGAAGACTAGCCAGACTCAAAAACGGCCCCGGATCACTCCGAGGCCGTTTTCTCTCAACACCTAATCAGTTCGCCTGCGAGGCTCGCAGCGGGGCATCAGCAGGAACATCCTTGAGCGGAATCCCCTGATACTTGCCCGTCAGGGTCTTCAGGAACGCCACGATGTCTGCAACATCCTGGTCGGTAATATCATGATCCGGCGTTTCGTAACGTGCCATGGCACGCACA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4815-4420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCQN010000005.1 Gluconobacter japonicus strain R71697 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4814 29 100.0 31 ............................. AGGCAGGCCGTCCGATCCCGGATGACACTAT 4753 29 100.0 32 ............................. ACGCCGCCCAGCATTGTACCGATCGGGCCAAT 4692 29 100.0 32 ............................. TTTGCGGTTGCATCAATCAGGCCAACCGCTGT 4631 29 100.0 32 ............................. ACGCAGCAGATCAGGAGCTTCTCTTCCATCTG 4570 29 100.0 32 ............................. GTCCACTTGGACCACTACAGGAAAAAATCATC 4509 29 96.6 32 .............G............... ACGACAGGGGGCGTGTCGCCGTTCCGGGACAA 4448 29 72.4 0 ........T....G...A.....ACT.TC | ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.6 32 GTGTTCCCCGCGTAAGCGGGGATGAACCG # Left flank : CGGGAACTGCGCGTTCCATTCCGGACGGCCCATCACGTCACTGGGCGCCTCGTCGGTCTGGCGGAGCAGCGTGGCTGTGATCTGGCGGATCTGTCTCTTGAAGATATGCAAGCCGTAGAACCGGGCATCAACGCCGGCATTTTTGATGTTCTAACGGTTGAATCTTCTCTGGCGTCCCGCACCAGTCTGGGCGGAACCGCGCCATCCAACGTGCATCAGCAGGCTCAGGCCTGGCTGGAAAAACTTGGAGACGCTGCATGAAACGTTTTCTGCTTGTTGGCCTGACCCTCGTAGCACTTGGCACCGGCCTGAGCGCGTGCGGAAAGAAAGGGGCTCCTCACGCCCCCGGCCCGGCTTCAGACATCACCTATCCGCGCAGCTATCCGCCTGAATAATGGACGTTTGCAGGGATTTGTGAAGGCGTGAAAAACAGCCTGTAAAAATCGGTAGATTTTCAGGAATGGAAATTCTCTTTTTGTATCAGTATGTTGTCAGGAAGA # Right flank : CGCTTGAAACGCTACGCCGCTTTTTCAATCTCAGACATAACAGGGTTATGGCCGCTCCCGGCGAGCGGTCACGATCAGCTATCCCCCAGCGCTTTGACCACTAGTGGGTGCTGCAGCACATTTTGTGCAGACCAACCCAGCGCGCGGAGGACACGTACCCCTGCTGCGCCGTCACGTTTGGAGAGCTTTTTTCCCTCCCCATCCAGAATGAGGGCATGGTGCCTGTAATCAGGTTCAGGCCATTTCATCAGAGCCTGAAGCACACGATGAACGGATGTGGCAGCGTAAAGGTCCTGCCCTCTTGTGACACAGGTTACGCCTTGTAGGGCATCATCATGGGTCACGCACAGATGGTAAGACACACCCGTGTCTCTGCGCCCCAGAACGATATCGCCAAATTCATCAGCGCGACCCGCAATCCGTCCCTGCCCGACTTCATGCCAAGACGGCACACCGTGAATTTCATTCAGGGCCCGTTCCATATCGAGCCGCCAAACCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 274266-274721 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCQN010000003.1 Gluconobacter japonicus strain R71697 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 274266 29 100.0 32 ............................. CAAAATGGCGCGCAATTCAGAACCGGCATGAT 274327 29 100.0 32 ............................. ACTGTACGGCGTCCGTACACCTTACCGACAAT 274388 29 100.0 32 ............................. TATGCCCGCAAAGGGATCAATCTGCCTGACCT 274449 29 100.0 32 ............................. GCGGCTGGTTTCAATGTTCCGACACTTGATGC 274510 29 100.0 32 ............................. AACGACAGAACCGTGTCCGAACTCTCATTCGT 274571 29 96.6 32 ............................A TCGCCGTGCCTGATCCCTCGTCCGACTAGGGC 274632 29 100.0 32 ............................. CAATGACAAATCCGTACAGCATTGGCCTGAAC 274693 29 82.8 0 ...........C..T...........ATT | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : GTAACCGTTCCCGGTTATACCGGAGCGCTGCTTCCTGCAGGACGCGGATCATGGGAACCATGTGGTTACCCATGTCCCTGATGCCTGCGAGTTCCCGATTGCTGGCGGAAAGCAGGGCTGCCACCGAACCAAAGCGTTCCAGAAGTGCTGGAACGAGGGTGTCCACTTTTTCTTTACGGCCCGTAAAAATCTGAACGATCAGGCGTAACAGAGTGTCATCGTCCAGGCGCCGTCCCCGCCCGCTCAGAAGGGCGACAGGGGGCGGAATATGCTCGTTGTTTGTCGGCTGTGGGCTGATGGAAAATGGTACGGTTTGGAAAAGGATTTTTCCTGAGTATTCAGCAAACCCATCATCAGAGGCCGGAGCATTAGTCATTTGTTTTTCTGGCACTGTAAGGCGCAGAAGATCAAGGTAGCATCGGCACTCAAAAAAGCTTAAAAAATCGGTAGATTTTTCGAGGGCTGTTTTTCCTTTGGAAAACAGCTATCTAACAGGAAGA # Right flank : TTACAGAAGGCCTTCCTGTCTGAGGCTGCTGAGAGTTGCTGTTTTGGTGCTGATAAGGACATCATGCAGAACAATGGAGAGTGGCCTGAGAGCGTTTTCCAATGTTCGTGCGGCTGTTGAGAGGGCTGGTGCTCTCAGGGCGGGCTGGACGTGTACGCCGATGATGGCTGTAGCGTGCAGAGCCAGGGCGCGAATGGCGATGGCGCGGTTCAGGAAAGTAATATCTTCCTCTTCGGGGGCAGCTTCATCAGCGAGGAGCCGGTTGCGGTTATCCAGATAGAGAACGCGAAGCTGTCCGGCGACTGCGCTTTTCAGTGCTGTTTCAAGGTACTCTGTCAGTTGGGGCCAGTTTCCCAGAATGGGGCGTTCACGGTGTTCCGCTGAAGCGAGGCGTTCTGCGGCGACTGATGGCAGACGAAGGGCTCGGATGGTATCGTCGTTCAGGCCGGCATTTCGCAGATCCCGCGTTGGCGCACGGAAGACGTTGATGAGACTTCCGA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //