Array 1 125002-123205 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJXA01000005.1 Gardnerella vaginalis strain 14018c 14018c_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 125001 28 100.0 33 ............................ CCTTCACGTTCTTTTGCTTTACAAGTATCCTGC 124940 28 100.0 33 ............................ CGGCACGGTTAAGCCGTTTGATATGCCGCTCCC 124879 28 100.0 33 ............................ CTCATCATTGGCTACACTCTCTGGATGCTTTAA 124818 28 100.0 33 ............................ CCGTAAAGTTTGCATAATGCGGCAACCAGATGC 124757 28 100.0 33 ............................ TGTGTTTTTACGAGGTTTTATACCTTCAAAAAG 124696 28 100.0 33 ............................ TCGTTAATGCGTGCTAAAAAGTTTTGTAAATAC 124635 28 100.0 33 ............................ TTATAAGCTGTAATTATAGGTGTAATATCTTTA 124574 28 100.0 33 ............................ TGGTTTGACGGTTCAGAAACAGATGTTTATGTA 124513 28 100.0 33 ............................ TATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT 124452 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 124391 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 124330 28 100.0 33 ............................ CACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT 124269 28 100.0 33 ............................ GCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA 124208 28 100.0 33 ............................ TTGTACTAGGTGGCGCAATCGATAGTTTTATTG 124147 28 100.0 33 ............................ TATGGCATTAAACGGCATTGACATATCATGGTA 124086 28 100.0 33 ............................ TATTTTCCTTATTTTGAGCTAATAATAAATTTA 124025 28 100.0 33 ............................ TAATCAAATTATTCGGATACTAAAAACCAAACC 123964 28 100.0 33 ............................ TCGTCATCACTCCATCCTTAAGCACAGGCTCAA 123903 28 100.0 33 ............................ TGAGCTTGTAAACGCTCTTGTAGATGCTGTGCT 123842 28 100.0 33 ............................ GTATGATGCATTGACGTGACATCTAAAGAACAA 123781 28 100.0 33 ............................ CTAACACGTTAGCAGATGTAGCCATTCGTGAAC 123720 28 100.0 33 ............................ CAAACGTTCTTCATTGCTTGCATTGCAAAATTA 123659 28 100.0 33 ............................ CCCAATGGCTTCCTCATCTCTAGCACGCTGCGC 123598 28 100.0 33 ............................ CTTGTATTCTCAATCAGAGAATACTTTGAGTAT 123537 28 100.0 33 ............................ CGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT 123476 28 96.4 33 ..........................T. CACGCCCGAATTGGGTATACTAAGTGTGTCGTT 123415 28 100.0 33 ............................ TGTCAAGTGTACCATCTTTTAATTCTTGTGCTA 123354 28 100.0 33 ............................ CGTATCATACTTTCTGAGTTTTGTCCTTATTGT 123293 28 100.0 33 ............................ CGAGTTGAGCGGCAAAGTCGAACATGAAACACA 123232 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 33 GTATTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCGGATTAGATTTAGCATTAAGAGAATTTATTGATTTTGTGGGAAAATTACCATTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGATGAGAAACTCAGCAGTGCTTTTTCTGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACTGTTCTGCATGAGTATAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCCTGGATGCTAGGCTAACGGCGCGTCTTGTTCTTAATTTGACAGAATTGTTAAAGTTTCTTTCATAAGGTTATAATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : TAAGCACCCTAAAAACGCGGCGGGTATAACCACGTCTTTTCCGCATACGCTGGATAAAACCTACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATAGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGTTGATTGTTTTTATAATAGGGTAGGCAAATAAAAACTTGCCTACCCCTTATTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGCCTCTTGCAGCGCTTGCCATGATGACGGCAGCTCTACAGGGCGATGTGGGCGGCGCGCAGCCCAATCACGTATAATGTCATAATCCCACGCAGGCTTTGCTGTTAGCGCACCAACTGAGTGCGTTGGTAGTGGGATCAGACCGCGGAGGCTACTCGCATCTTGACCATCTAAGGCTGCACGCCTAGATCGCACCAAATACTGGCGCATAGACTCGTAGCCGACGCCAAGAAGACGCGCAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //