Array 1 51934-55597 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPJL01000015.1 Gallibacterium anatis 7990 contig000014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 51934 35 100.0 37 ................................... TTGTTCCAGTGGCTCGGTGGTCTAAGACCCAATCGAT 52006 35 100.0 38 ................................... TCTTCTCTCTTTTCTTTCCAACTATTCATATAGCTAGA 52079 35 100.0 34 ................................... TTTTTATGTTGGAGCGTCCTTTGTAAGCTCCTAC 52148 35 100.0 36 ................................... TTCTCTTGGCTGAATCATTTTCTGCTGCTCGGTTTT 52219 35 100.0 36 ................................... TGAAAGGATCAAGGTTGTATTGATCATTATGGTAGG 52290 35 100.0 38 ................................... TTATGATACCCGCTGTGATTATATAGACTGATTGGTAG 52363 35 100.0 36 ................................... TTAATATAGGCGTTCTTCTCTTGTTCACTGAACAGG 52434 35 100.0 37 ................................... TACCGCATCAAATTCTAAAGAGCCGTTTTCTAACTCT 52506 35 100.0 34 ................................... TATATTTCATTTTATTTCTCCTTAGCCGCTGGTC 52575 35 100.0 38 ................................... TCTCACGAACTCGCCTGACTTGTCACTCCACACCCAGT 52648 35 100.0 35 ................................... TCCAGCCTTGAGGATTATTTCAGCGTCCTGAATGT 52718 35 100.0 34 ................................... TATAGGCGTTGTTTGTGTTATCCAACAAGAATTG 52787 35 100.0 33 ................................... TTTGAAAAAGTTGAAGTTGATTCGTCGTTGTTT 52855 35 100.0 35 ................................... TGTGAGCATTTCCCAAAGCTGGGCAGGGGTGATTA 52925 35 100.0 35 ................................... TTTTGTGGTGAAGGCGGTTCATCTCGCCGTATTGG 52995 35 97.1 37 .....G............................. TATCATAACCACTCAAAGCGTTGTCCAATTCTGACTC 53067 35 97.1 35 .....G............................. TAATTGCTAACTGATAACCATTAGCTTCTGAAACT 53137 35 97.1 37 .....G............................. TTTATATACGTACATAAATTCCATAATTTACTCCTTA 53209 35 97.1 38 .....G............................. TTGTTCCAGTGTATCGGCTGGACGCTCCTTGATGTATC 53282 35 97.1 36 .....G............................. TATTGCTAACTGATAACCATTAGCAAGCGATCATTT 53353 35 97.1 38 .....G............................. CAAAGATTGGTTTTCCATAGTTACTCCTTAGCCAATGA 53426 35 100.0 39 ................................... CTTCGAAAATTAGCGTATAGCCCGCCATCCATTGGTAAA 53500 35 100.0 35 ................................... CTTTTTATAGCATCCTGTTTAGTTTTGGCAGGGTG 53570 35 100.0 38 ................................... CAAAATTTGAGGCAGAAATTGTGTTCGATCATATCAAT 53643 35 100.0 35 ................................... CTAGTTCTGTATTCATCGGGGTCATCCTCTTCATA 53713 35 100.0 37 ................................... CAATGATTTTTCCAATTAGTTGCTCGGGGGTGATTAA 53785 35 100.0 35 ................................... CTTTTCCTATTAGCTGTTCAGTTGTTAATATATCG 53855 35 100.0 38 ................................... CTCTGATGATCAACACCAGTTTTGAAACAGAATACTTT 53928 35 100.0 34 ................................... CATGGTTCTGTATTCATCCTCTTCATACTCCCCC 53997 35 100.0 35 ................................... CAATAAGCGTTGCCTTCTTCCGTTGGCGCGGTTTT 54067 35 100.0 38 ................................... CCCTTGAGAGGTTACGCTATTTTTACGGCGTAGCATTT 54140 35 100.0 38 ................................... CATACAGCGGTTTTTGTGACTGACCCATCAGGGTTCAC 54213 35 100.0 36 ................................... CCCCACCGCTAAACTGGTACTCGTAACCCGCAGTGT 54284 35 100.0 37 ................................... CATAGGATTTTTCCAATTAGTTGCTCGGGGGTGATTA 54356 35 100.0 35 ................................... CATATTTTTAAAGAGCAAGTGATGACTTTTTCAAG 54426 35 100.0 35 ................................... CCTTATACAGTAACGTTTTTCGTAATTCCTCAAGT 54496 35 100.0 35 ................................... CCTTACATCAGTTAAAATTTCATCATACCCGCTGC 54566 35 100.0 34 ................................... CGTATTCTAGACTTGCTAGGTAAAGTTTACCGTC 54635 35 100.0 38 ................................... CTTTCGCATAAAGCGACATTCTAGCCCATTGCGATAAC 54708 35 97.1 36 ...................T............... CCCAGATTTTTTAGCAATACTTCACTACTTGCCTTT 54779 35 97.1 35 ...................T............... CTCCTCTAGGACGTTGTAGGTAGCAACGCCCTGAT 54849 35 97.1 36 ...................T............... CTCATACCCCTCTGAATCTTCAGATGTTCCGATGAC 54920 35 97.1 36 ...................T............... CGCACTAATTGCGTATGCATTATTGCAATTATCTAG 54991 35 97.1 36 ...................T............... CTGTATCGGTGCGAAGAAGTGAATATATCGATTTAA 55062 35 97.1 37 ...................T............... CCATAGTGCATACCCAATGACTCCGCAATCCCAATCA 55134 35 97.1 35 ...................T............... CCTTTATATAGTGTTGTTTTCCTTAACTCACTTAG 55204 35 97.1 37 ...................T............... CTTTCAATGCACAGCTTACTACTGCATGACAAGTATC 55276 35 97.1 38 ...................T............... CCCCTCTCCACCCTGTCTAGTGAATTCGAGCATAAAGT 55349 35 97.1 37 ...................T............... CTAGAATTTCACTGACAATATCATCCAAATATTCCGC 55421 35 97.1 37 ...................T............... CTTCCTAGCAGCTGTTCGGTTGTTAATATATCGCCTT 55493 35 97.1 35 ...................T............... CCATCCCATACGTTGATTCTTTACTCATTACATCT 55563 35 88.6 0 ...............................ACTT | ========== ====== ====== ====== =================================== ======================================= ================== 52 35 98.8 36 GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGA # Left flank : GAGGTTGCAAGATTGATTAAACAGGTGGATGACAGTGATGATTACCATATTGCATTGGAAAGTTTCTTTTTAAATCAACTTAGTATGTTGGCACCGGAGGAATAAAAATGAAACAGTTCGTCATCGGTTATGACATTACAGATCCTAAACGGCTACAAAAGGTTTATAAACAAATGCAACATTTTGCGATTCCGTTACAATATAGTATTTTCTTATTTGAAGGAACAAAGGAGCAGTTGCAGAAAGCCATTGCACCGGTGATTGAAACAATTAATAGCAAAAAGGACGACTTAAGAATTTATGAATTACCGAGTTATGGATTAAAGGAGCGAATCGGAAAAACAGTTTTGCCGGAGGGCATTGTGTTAACGGCGCTACCAACCAGACTATAATTTTGCTTAAATAATAATCATATTGAGGGTTAACTATGCAGTCATTCATACTTTTTGGCAAAGCCACTTTTAATTTATTGATTACTAATGTATTTTACGGTGTCGGGA # Right flank : TTTATAAAAGACATTAATGATAATTTTTTAAGGAAATATCAAATTTGAAATTTTTCTATCTATAGTAACGGTGATATATACTTAACTTTGTTATTACGAAGTAATAATGAAATTAAGTATTTAGTGTATAAATTTAGGAGAATTTTTATGAAAACAATTGCAATTATTTTAACGACTTTATTTGCGGTTACCGTTACTGCGCCTGTGTATGCCGGTTCTTGTGATTATTCTTGGCAAACTGCAAAAGACGGTTCTCGTTGCGGAGATCGTGCTGCGGATAGAAGACCGGGAGGCAGATAAAAGATAAAATGCATCTTTTATTATTTACTATAGTTATTATTTTCGCTTCGCCGGCATTTTGTTGGACGGGATATAATTATGATACCGGCTCTTATTTTGAAGTTGAACGTTATGATCATCAAGGATTGGGTGAAGGCCCGGTGGAATATTATGATTATGACAGCGGAGAATATAAATCAGGTTATTTAGATCTATTTCCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //