Array 1 116424-115415 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTDA01000003.1 Flavobacterium covae strain 1362 NODE_3_length_118251_cov_22.4554_ID_20094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 116423 35 86.1 82 A..A.AA-............................ CCGTTTCAAAACATTAGTCATCGTAAGTTGGTTTACAAACACCAAGTTAATATTTATTATAGGTGTGTTTGTGAATCTCCCT 116306 36 91.7 30 C.G..C.............................. GGATTTATAAAACAAAAACAAATAACAAGT A [116299] 116239 36 100.0 30 .................................... AATAAATGGCAGCAACTTTAAGAATACCGA 116173 36 100.0 30 .................................... AAATCAAACAAACTTGTGGTAACAGTAGCT 116107 36 100.0 29 .................................... ATATTCCTTTTGTGAAGATTCGTGGCTAA 116042 36 100.0 30 .................................... TTCAATCATTTACTAAAAAATTCCGTTGGT 115976 36 100.0 30 .................................... TTTCAAGCCATAACATCGCCTCATCGTAGC 115910 36 100.0 30 .................................... CCTGTAACCTTTCAGCGGTTTAGTTACGTT 115844 36 100.0 30 .................................... ATTTTAGTAATGTTTAATCGTGTCATAACT 115778 36 100.0 29 .................................... ACGTTTTTGGATGGACAGACTTAGAGTAT 115713 36 100.0 29 .................................... ATATTCCTTTTGTGAAGATTCGTGGCTAA 115648 36 100.0 30 .................................... GTTGGATTGTCGCACACAGTTGTACAGCGT 115582 36 100.0 30 .................................... TCCAAATGCAACCATAAAAGTATACCCCAG 115516 36 100.0 30 .................................... GATTTTGGTATTGTGATTTGCGGAAGTGGA 115450 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================== ================== 15 36 98.5 34 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : TTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAGCAAGCTAAAATCGATTTGTTGCGTATTTATGAATATAGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTCGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACTTCATACAGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGTTTCGGCGAAGTCAAAACACGAAATTACTTATTCCCTGAAACAATCGCACGAACTGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTGTTTGTA # Right flank : AGTTGATGTTTTATCTTCTAATTATCAAATGGTTAAGTTTTGATATCGTTAAAAAAAATGCTTCTTTTTTGGGGTGCTATGCCAAAATTGAAGCATTTTTTTATTCCTAAAATAATTCAAGTTGAGTGGGTTGAGGTCCCGAAGGAATTTCTACTTTTCCCCAGAAATTTTGTATATTCCCAAATTGCTTGTCTGTAATTCGTAATATACTTACTTTTCCTGAAGGAGGTAGGAGTTTTTGTACACGTTTTTCATGTACATCAGCACTTTCGCTACTCGCGCAATGTCGTATATACACCGAGTATTGCATCATACTGAATCCATCTTTCAAAAGTTGGTTCCGAAAGCCAGAAGCATTTTTTCGGTCTTTTTTAGTATCAGTAGGCAAATCAAAAAATACAAACAACCACATGATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTGCGCTCCCCAGCAAAACACTGTTGCAACGAACTAGCCGTTT # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 911-1608 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTDA01000041.1 Flavobacterium covae strain 1362 NODE_41_length_22725_cov_17.0224_ID_20170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================================================================== ================== 911 29 80.6 35 C....CCC.--.................... CCAACCAATCTTAACTGCTGAAATTACGCAAGGTA 975 31 100.0 35 ............................... CCAACATGGAGTCAGTGGACATGTCTGATCATGTC 1041 31 83.9 62 ....................A..AT.AA... GGTTTTAAACGCCCACGCGCCTCCTGGCTACATCGCTAAAATAGTCCACTGGACTATTTCTT 1134 31 74.2 34 AAC.CTCG.C..................... CCAACCCGTTTAAAACAATGGTCAGAAGAAGGCG TC [1146] 1201 31 100.0 34 ............................... CCAACAAGAATTAATAAAACTGAATTTGAAAAGT 1266 31 100.0 35 ............................... CCAACAATGGGTATCTATTTTGAAGGTAAAGAATT 1332 30 77.4 86 ...................-...TCAT.CA. GAACTTCTTAAAAAAACAATAAAAAAGAACGTGAGTAAAATAAGGGCTTTCCCAACGGTGAAAAAAGTAACGATTAGTGTTTAATT 1448 31 100.0 33 ............................... CCAACGGTGGATAGTGAAGGAGTATTCAATGGT 1512 31 96.8 35 ...................C........... CCAACTCATAAGCTGTTTGCTAACGGTCTCCGTAT 1578 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================================================================== ================== 10 31 91.3 43 GTTGTAGATACCCTTCAAAATAAGGGCTTTC # Left flank : AAATCCAAAGTCGGTAAACGGATTGATGTATTTAGCCTTCATGATTCCAAATGGTTTGATGATTCAAATTTACAAAAATATCTTAGGTGTTGAGGTTAAATTATAAGGAAGTTTAGGAGGCAGTATATGGATCATATTTACTTGATTGTGTTATAGGTTTGTTTTTGTTATTTTTAAAAAAGAGGTATTTCTATGAATAAGAATTATGGTTTATTTATTTTTTAAATAATTAAATTTGGTTTCAAACGCCTGCTCGCTATTTTGCTAGAGACTGTCCAAAAAGTTCGCAATCTTGTGATTTTGACCAAAGGAAGAAATTACATGCTATTGATTATGAGACTCCTTCTACGTAGGAGTGACAAACTGGATGTTGATTTAGTACTTTTTGGACAGCTTCCTTAACGCTCGTCCCTCCTTCAAAAAAAAATGAATTCGGTTTTAAACGCCCACGCGCCTCCTGGCTACATCGCTAAAATAGTCCACTGGACTATTTCTTAACG # Right flank : CCCAACTAAGTGTTGGTAAGCCTCTCGTAGTAAGGGATTACTACAATTTTTTATACAAAAAAATGAACTTTTTTTGTTTTAATCACTGCAAATGTAGTCATTTTTTTAATCCTAATTTAAAATGTCAAAGAGCAATTGTATTTAGACCCGTGTTTTATCTTTTTTCTTTTTGTTTTCCCATAATTCTGTTGTTATGGTTTCAAAAACTCGGTTGAAATAGCAAGCAAAGTATTCTTCTTCTTTTTTTGGAACAAAACGAGTCGCTAAATCGTAAATAAATTTAGGTGGATATTGATTGTGCGCCATTTTGTTGCGAATGATAATTAACACAATCGCTTTTTTAATGATTGGATTAGTAATTGTTTCATCCAGTTTCATCATTGCTTCTACTTTTTCTGGCAGTTTATCAATTTCATCTTCGTTTGCTAAAATAGAATGGGCTAAATACTTTTTAAAATTTGGATTACCCTCTCTTTCAAAATCGGCTGGATGTATTTGCG # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.64, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGATACCCTTCAAAATAAGGGCTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.30,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [10-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //