Array 1 7875-6292 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSPP01000071.1 Phocaeicola vulgatus strain TM05-16 TM05-16.Scaf71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 7874 47 97.9 30 ...A........................................... ACGTCTTGTAGTCCTCATCCTTCCCGCTTA 7797 47 100.0 30 ............................................... AAACCTGCAAAACAAACCTTGAAACCTGTT 7720 47 100.0 30 ............................................... TATATGGAACAATGATACAAACTACTAGCA 7643 47 100.0 30 ............................................... AAGGAGGGGAAGATGACTGTCGCTGAATCT 7566 47 100.0 30 ............................................... TTGCCGAATTTAAGCGCAATTTCGGGAACT 7489 47 100.0 29 ............................................... AATTTACTACGCTGACGCAAACGGTGAAC 7413 47 100.0 29 ............................................... AGGAGCATTCTTAGCTCCCTGTGAGTAGT 7337 47 100.0 30 ............................................... TATTCGTAGAGGGCTTGATAGCAGCCATGA 7260 47 100.0 29 ............................................... TTTCACAATCAATCATTTGAGGGCTGCAT 7184 47 100.0 30 ............................................... TGTCACAATTGGGATCTGCTGGTAGAAGCG 7107 47 100.0 30 ............................................... TTAAAGAGGACGTCTTAAATTATATCAATG 7030 47 100.0 30 ............................................... GAAATCTATCTAATACTCTTTCTTTAATAA 6953 47 100.0 30 ............................................... GAGCGCGTTATTGCTATTATGGTAAGACGA 6876 47 100.0 30 ............................................... AGGAACTGCAATTTGTCCTGCCGGAAGTTG 6799 47 100.0 30 ............................................... ACATCACCGGTAGAATCGCTGGAACTGGCG 6722 47 100.0 30 ............................................... CGATGGGTGAGTTTAAAGTAGTTCAACGGA 6645 47 100.0 30 ............................................... AATACAATATACTACGTGATAGTGCAGAGG 6568 47 100.0 29 ............................................... TGATCTTCAAATTTTTCATTGGTTGAATC 6492 47 100.0 30 ............................................... TAAGTAACTTTCCCCGAGAATTGGGAGGTT 6415 47 100.0 30 ............................................... CCTGTCAATAGACGGGTTCAAGCGAAATGC 6338 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 21 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTTTCAGCTAATAT # Right flank : GGAATATATGTTACAAACTAATTACCAATTAGTTACACATATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //