Array 1 869337-870771 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056951.1 Escherichia fergusonii strain RHB42-C01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 869337 29 100.0 32 ............................. CGAACGCATGGTCCACACAGAGAGCCAGTGGA 869398 29 100.0 32 ............................. CATTCAAACGAACGAACCACTTTCTGGTAACT 869459 29 100.0 32 ............................. CGATCACCGGCGGCGACCTGGTGGAAATCGAC 869520 29 100.0 32 ............................. CAAAATTAATTTTGTTTTATCCTCGTCCAATG 869581 29 100.0 32 ............................. TTATTTTTGCTTTCTCTGCGCAATACGTTCGC 869642 29 100.0 32 ............................. CATCACGCCTCACTAATTGAAAAGCTAATATT 869703 29 100.0 32 ............................. TTGCCCAGGCTTTTGCGAAAATTTGTGATTTG 869764 29 100.0 32 ............................. GCTGGGTATGTAGATGGCTGGAACGCCTGTCG 869825 29 100.0 32 ............................. TAAACGAGACGCCAGAGGAAATAATAAAAATG 869886 29 100.0 32 ............................. ATTGCTATTTCAGCCAGCACAGTGCATCACAA 869947 29 100.0 32 ............................. CCCAGCGGAGTGATCAAGGTTCCTGGCTCGAT 870008 29 100.0 32 ............................. CCAGTCGCTTTCAATTTTCGGCGTGTAGCCTT 870069 29 100.0 32 ............................. ATTTGCCTCATATGCCTCTGAGTCAAAGTTCG 870130 29 100.0 32 ............................. CGGGTGGCAATAATGGAAAAAGGGTGGTTTCG 870191 29 100.0 32 ............................. CCCCATCTAGCCATACGCACCCCTGGAGTCAA 870252 29 100.0 32 ............................. AGTGAGCAAAATTATTGAATTACCCGTTGAAC 870313 29 100.0 32 ............................. CAGGCGTGGAAAGATTTCCAGCCAGCGCGGCA 870374 29 100.0 32 ............................. CAACTGAATTTCAATCAATAGCAACGGGTTTT 870435 29 100.0 32 ............................. GTCAGTTAATCCCGACCGATGCCGGCACAAAG 870496 29 100.0 32 ............................. CCAGCTCTGATTACTCCACGGCAATAGGTTAC 870557 29 96.6 35 ............................A CCGTTTATTCTTATCGCTGGCGTTAACGTCCACAA 870621 29 93.1 32 .........A..T................ CCGAAAGTGGGCGACTACGCGGTCAACGAAGA 870682 29 100.0 32 ............................. GACACAGAGCGCCGCTATAGCGCCTATGCCAA 870743 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= =================================== ================== 24 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTTCTTTAGGATAACGGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATGAATCTCGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGATTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTACGATTCGCGTAGTCTTTTATTCTAAGGACATCGATTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGGACTTGTTATAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 896279-897344 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056951.1 Escherichia fergusonii strain RHB42-C01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 896279 29 96.6 32 ............................C GAGGTGCCGCCAGTGTTATTTGATGCGATTTT 896340 29 100.0 32 ............................. CATATCAGGTATATCGTAACGGCGGGGCCGAC 896401 29 100.0 32 ............................. ACATCACGGTCAGCACAACGCCTGTTGCCTCT 896462 29 100.0 32 ............................. TTGAAATGGCGATGATGGAATACAACGTGAGT 896523 29 100.0 32 ............................. GGCGCTGATTGAAGTCACGCGGTAAGTAAAAG 896584 29 100.0 32 ............................. GGCGGGGCGGGGTCGGTAGGCAAAATCCCGGC 896645 29 100.0 32 ............................. CGCCCGACACCCAGCGACAGCAAAGACACGGG 896706 29 100.0 32 ............................. ACGTTGCCAGCATGTCCGGGCGACTACTGAAC 896767 29 100.0 32 ............................. ATGGCTGGATCATGGTTGTGATGGGATTTACC 896828 29 100.0 32 ............................. CTGGTATTTTCGACATTATGCTCAAAAACAGA 896889 29 100.0 32 ............................. TAACATCGTTGTACGGCTCAACTTGTCTTTGT 896950 29 100.0 32 ............................. TTGGGGTTTTTCCGTATATGGGGGCAACCATC 897011 29 100.0 32 ............................. AGTGAGTCTCGTCGTCGTCGTGCATTGCGGGA 897072 29 96.6 32 .T........................... GGAATCTGACAATACGGCAAAGGTGACTGTTG 897133 29 96.6 33 .T........................... AGTCCTTAACCTCGGTACTAAAACGGTTAATGC 897195 29 96.6 32 .T........................... CCTCTGGATTACTACCGATAACTAACACTGAA 897256 29 96.6 32 .T........................... GTAATGCACTCACCACGGTTACAACAGATATT 897317 28 79.3 0 .T..........T.........-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTAGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : CAGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //