Array 1 1607-2114 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGZ01000011.1 Gilliamella apicola strain Fer4-1 Gilliamella_apicola_Fer4-1_contig108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1607 28 100.0 32 ............................ AAACGACAGTAATTTTAAGAGTCGGCGGATTT 1667 28 100.0 32 ............................ ACAATTTGCGGATTTGGGTCAAATTTCTGCAT 1727 28 100.0 32 ............................ ACAGTAGTTAAATCGGCACAACGAAGTGTGTC 1787 28 100.0 32 ............................ TTGCCAGCTTAAAATCTCACGACCTGGGTCAA 1847 28 100.0 32 ............................ TGATTTTGTTGTAATGAATAAAGATGGATTAA 1907 28 100.0 32 ............................ AAATAGTAAGCGGTCGGATTTTTTATGTAGAT 1967 28 100.0 32 ............................ ATAGGGGAATATTTTCTCCTGTGGAAAGTATT 2027 28 100.0 32 ............................ CTAAATTTATAGATGGCGATATTCGAGAACAA 2087 28 92.9 0 ........................A.T. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTTACCGCCGTGTAGGCGGTTTAGAAA # Left flank : TTTTATTAGCCAAATTGGACGATTATGTGGATTATGTTGGTGAAACCAGTCTAATCGACTCTCAACAGAAACCGGCTCCGTGTCGGCAGTGACTTGCCTACCGGCAATTGTTGAATTATAAACATCAACAATAAAAGGCAAATCGGTTAATGTGGCATCTTGATAAGTAATCATAGCTTTTGTTATAAGTGATTAAAGTAATTTTATTGTAGTTTTATTATTTGTTTTAGGCAATAAAAGATATTTTTTCAACAAAGAAGATAAAAGCCTATCGTTTGTTATTTTATCAAATAATATTAGGATAATATTGTTTAATAATACTGGATGCTGACCAAATGGGTTGTTATCATCCTACCAAAATCCTTGCCAACCCTTTTTTTTAACAATAAATTAAAGTAAATAAAAACAAATAGTTAAAATGATGCCTAATAAAAGGGTTTTTGAAAATAAAAATCTTATTTGCCTTTTATTAAACAACGTTTATAGTATATTCGATTCTA # Right flank : TTTTTCTTTATTGTTATATAGATCATGCCTGCCACTAATATATAGTCGTATTTCGCCAATTAAAAAGTTAAATAAAATCAATGGGTTTTCTGAACTGTTTTTATATTTATTTTTGTTAGTTAACTCACATTATTTTTAAGTCAATTCATCTTCTCTTTAAATTAGAAAACATAAAATATTGTAATGTTAAATAAATATGTTAACGTGCCTTATGTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3673-3225 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGZ01000189.1 Gilliamella apicola strain Fer4-1 Gilliamella_apicola_Fer4-1_contig269, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3672 28 100.0 32 ............................ TGCTTGTAGGCCTCTTTATCTTCCACAGCTTC 3612 28 100.0 32 ............................ ATCCCGAACGCATAGGGTTATCAGTGGCTTAT 3552 28 100.0 32 ............................ TTTTTTTGAGCGTGATTTGGAGTGATATTAAG 3492 28 100.0 32 ............................ GTTCGCAACATTCCTAGGGGAATATTACGAAA 3432 28 100.0 32 ............................ TCATCATCCAAAGTATTTTCAACACTTTTTGA 3372 28 100.0 32 ............................ AGAATTAATTCTTGGAAACATTGAATCCCCTT 3312 28 100.0 32 ............................ ATTTAAAGCGGCTTGGAAACTCATTAATGATC 3252 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTTACTGCCGCATAGGCAGTTTAGAAA # Left flank : AAAGCAGATATACAGCAAAAATCATCAATTAGTGATTATGCTTTACTGATGTCTATTGAAGCTATTCCCGTTACGATAAAAGGTTATTTACGTTTAATTCGTATTCATCCAAAAGGGCAAAGCGCATTGAGGCGTGCTGAAAAACGATTAACAGCACAAGGTAAATGGTCGGCAGAGGTTAAACAAAAAATGATAGAAAAATGGGGAAGCGTTAATTTGCAATATCCTCATATTCACCTTGCCAGTAAAAGTACAGGGCAAAAGTTTATTTTGTGGTTAAAACAAGAAAAATGCTTAAAGCCTGTATCAGGTACATTTAATAGTTATGGGTTAAGCCAAACAGCTACCGTTCCCGATTTTTAAATTGGCAACCCTTTTTTTGAAGCTAATTTTAACTAATTGATTATTATAGATATTAATATGAGATCAAAAAAAGGGTAAAAATAAGGTAAAATATCAAAAGCTCTTTTACAATAAGGCAATTTTGCAAAAAAACTCTA # Right flank : AAAGTGTTTCTAGTTTTTATTAACTGAAACACTTTATTATTAGTATCATCAAGTAACTATTCTGCGCCAATTTGTGTACTCATTTTTATCTCTCGATTATCGGCGATTTCTAAATTTGACAATACGGCTAATTGAGGAAAATTCTGACGTAAAAATTGTGATAACATCGGTCTTAGTGTATGGTTCACTAATAATACTGGTGGAGCACCGATTGCTTCTTGTTGATTAATGGCTTGCTTAACTTGCTCTATGATATGCTCAGCTAGTCCTGGCTCAAAATTGCTTGTATTTTGTAGAGCTTGTAGTAATAAGCGTTCTAAATTGATATTTAATCCTATTACACTGATTGGATCTGAACCTGGAAACCATTGTTGGGTGATAACTCTGCCTAAAGCCATTCTGACCATACTAAGTAATTGATAAGCATCATTTTGGGGAGGCGCATGTTCACAGATTGTTTCAATAATGGTACGCATGTCACGAATTGATACTTTTTCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2584-2847 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGZ01000261.1 Gilliamella apicola strain Fer4-1 Gilliamella_apicola_Fer4-1_contig333, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 2584 27 100.0 33 ........................... AAACCTGATGTATTTCTTAAAATACAGAAAGCG 2644 27 100.0 33 ........................... AGTCTGGGAATAAGATTTACTCACGTGCTAAAG 2704 27 100.0 30 ........................... CAAAATAACGGCATTAAATGAGTGAGCAAT 2761 27 100.0 33 ........................... CTGCTTTTGCGGCACTCCCCACTTTGACTTCGG 2821 27 70.4 0 ........C.....G.T.....TTTTT | ========== ====== ====== ====== =========================== ================================= ================== 5 27 94.1 32 ATTACCGCTGCATAAGCGGTTTAGAAA # Left flank : AGCTATTAAGTGGCTGGGTGGTGTGCATTCTCGAAGCGGTTTATCTGATGAAGATTTATACAATTTGGCTTGGTTATATAAAGTAGCTGATAGAATGCGTCACCACATAGAGTTGGTAGAGCCTGCATTGCGTGCAATAGATTCCCGTTTTACGGGAGCTTTTTACTCCATGGCTTATGATTATAAATATACGTTAAGACAGGCTAGAAAAGTTATTGAACGAGAAACAGCACATATAATTACAAGTCATCTTACTACAAACTGGAATAAAGTATTGCCAATCATTCGACATAACTAACTAAAAAATCGTCAGGAAAAATATTGATTTTATTTAAGTTTTTTTGATGTTTTTTGAGGGTAAACTCAACAACCCTTTTTTTTAACCGCTTCTTTAATTCATTGAAAAATATAAATTAATTCAAGCACTAGAAAAAAGGGTTATTTTGTGAAAATTGGTTAAAATTTAGTTAAAACAAAAGGCTATGTTTGATATAATCTAG # Right flank : TATGCTCGCAAATGCGGGCTTTTTTATGTCTGGAGAAAATTATGGAAACCTTTTATTGGAGACCTCAAAACAGCTCAACAGCCTCAGTATCACCAAAAGTAAAGGTAATTAAGTTCGGTGATGGCTACGAACAACGAATTAGAGACGGTATTAACAACGACCTGCGATCCTACAATGTAACATTTGTCGGGCTATCAGAAGATATCAGTTTGATTGATGATTTTCTTAGCCGACACAATGCGGTTAAAGCCTTTTTGTGGCGAGAGCCTAATACGCACAAAACCATAAAAATTGTTTGCCGATCTTGGACGTCAACGCATGACGGTATGACTAAAACAATCAGCGCTACATTCGAGGAGGTGGTCGCATGACTTTACATGTACCTAGTGATTCACTTAAATTGCTAACAAAATTCGAGCAAGGGGCGATGATTGACTTGTATGATGTAGATCTTTCAAAAATTGCTGGTGAAAAATTAATTTTTAGATTTCATGCGGGGT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACCGCTGCATAAGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 4438-4049 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGZ01000053.1 Gilliamella apicola strain Fer4-1 Gilliamella_apicola_Fer4-1_contig146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 4437 29 100.0 31 ............................. TGCGCTCACAGTTAATCCATTTTTATCTAAA 4377 29 100.0 31 ............................. TCGCGCTCATATGTGTTCATTAGAGTATGCA 4317 29 100.0 31 ............................. ACGGCACAATCAACGCATTACAAGAAAGCAG 4257 29 100.0 31 ............................. CAGATCATTTAATGTTATTGGTTCTGCCGTT 4197 29 100.0 31 ............................. ATCCAAAATATTCTTTCGCTATCGCTGTTGG 4137 29 96.6 31 T............................ CATATCGTGTATCCAGCTCGTATCGTCACGC 4077 29 79.3 0 .....................G.GC.TTT | ========== ====== ====== ====== ============================= =============================== ================== 7 29 96.6 31 AGTTTACCGCCGTGTAGGCGGTTTAGAAA # Left flank : TCGACTAATTGCAAAAAAATATCTAAAAGATCTTCAGAAAGACCATCAGTTTTATAATTATGAAATTGATAACTGACATGGTGATCATCAAGCCAAGTAAAGGCCTTTTTCATTGTATTGCAGTTTTTAATGCCATAGATGATGTACATAATAGAGATCCAAGTTTGAAAGATAACAAAATTATAGCAGTATGGGCATTGTGCAGCAAATTGCAAGAAACTATTTGGTTAGATATCTTATTATTGATTGATTTAGTGTCATTAATTTTTTATCCATTGGTTTTATCTTAAAATAGAAATAAAACCAATGTGGTATCTGATGTTTTTTGCGTGAAAAATTAAGTTATCATATAAAAATTTAAAAACTTGTTACCCTTTTTTTTAACAAAAAATTAAAATTAATAAAAACAATGAATTATAAAACAATTTCCAAAAAGGGTTTTTGAAGACAAAAATCCTATTTGCCTTTTGCCAAACAAAGTTTATAGTATATTCGTTTCT # Right flank : ATAATGACAGTAAAAATCTATTGGGAATTTAAAGGACAATTAGCTATAGATTTTTATTGATTAACATGAGTAATCAACCATTAATTAATTGCAATAAATTAGCTATTAGATAAGGGCAGTCTTTAGGGATTTTATATAAAATCCCTTATTTAATTTAGCATTTATCAATAAAGTAACGCATAATGCGATTATCATTAGTTAGTTCGGGGTGAAAGGCGCAAACTAGGATATTGTTTTGTTCTGCCATAATACAATGTTGTTGGACAAATGCGAGTTGCTGAACAGCTTTTCCTGCTTTGGCAATATAGGGGGCTCGAATAAATACAGCGGGTATTTGTAGACCAACAACTGGTATATCTAAGGTTGTTTCAAAGCTGTTAACTTGGCGTCCAAATCCATTTCTTTCAACACTTATATCGATTAAATTCAATAACTCTACTTCGTTATGTGTTGTGGTTTTACCGCAAAGCACAAACCCAGCACAAGTGCCAAAAATACCT # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTACCGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.50,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //