Array 1 1765-138 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTK01000054.1 Geobacillus stearothermophilus strain FHS-PCGT134 scaffold_54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1764 30 100.0 35 .............................. ACAACATGCCGGAGAAAACGATCGGAAATATCCTT 1699 30 100.0 35 .............................. AAAATAGATGTCCCAAAAATTGACAGGCCGAAAGG 1634 30 100.0 36 .............................. TCACGCCAATCTCCAAGTTTTCACGCAGAAACTTTT 1568 30 100.0 35 .............................. AGCTCAAATTGAATCATTTTCGTTTCACGACGAGG 1503 30 100.0 35 .............................. ACGAGTACGTCGACGTCGAAACTACAATAGAAATC 1438 30 100.0 36 .............................. TATAGAAAATGCTGGACGATGAGCTTGCCTTTCCGC 1372 30 100.0 35 .............................. TCATCGCCCATTTCAGTGACAATGGCCACGATGTC 1307 30 100.0 38 .............................. CCACATTTCGCATCGCTGTTCGTTTTGAATGCCCAGAC 1239 30 100.0 36 .............................. CCCGACGAGTAGCGGGATAATGTTAGCGTTTTTCCT 1173 30 100.0 37 .............................. CCACTTGTTGAATATTCAGCAAAAGATTGCAGACCGA 1106 30 100.0 36 .............................. TAGTACTACAATTTTATCTAGATGTCAACTACTTTT 1040 30 100.0 39 .............................. CGCATAATTGAACACTCTCCTTTGTGATTAATTTTTCGT 971 30 100.0 40 .............................. TCCTCAACAATCTCGAAGAAGTCGTCAGAGATTGCGGCGC 901 30 100.0 37 .............................. TCCAGCATGACAACCACTGTCCCGCTGGATTCACGAA 834 30 100.0 35 .............................. AAGTTTCAATATCGCCCCGAGATGTATTGGCTTTA 769 30 100.0 39 .............................. GGTAGAATCACAATTTCGGTTCTCCATATACTTCCCGAA 700 30 100.0 36 .............................. AAGAAGAGCAGGAAAGAGTAAGAGAGGATCTGGAAG 634 30 100.0 37 .............................. GCATTTTTGTTACCATTTGAATTTGATTCATCATGAT 567 30 100.0 38 .............................. TCTCTTTTCAAAGTGACGATGTTCATTTATGCGTACAA 499 30 100.0 38 .............................. CCCAATGATCGTAAGGAAAAAGCAACGCCTTTGCGTTC 431 30 100.0 36 .............................. CCATGATGGTGATGATGCAGCGATTGCAAAATTTCC 365 30 100.0 36 .............................. ATACGCTCGAGCAATGTTGCTTGGTCTGTTATTTCC 299 30 100.0 36 .............................. GATGCCTCGATCGGTACGCTGATACATCTTTAGAGG 233 30 100.0 36 .............................. CGTTCATAATTCCCGCGACAAGGTCAGCTTGCAGGC 167 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 100.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTGATGATTGTGGAATTGAACTTGACAGAGATCGAAACGACAGTATCAATCTTTCGAGATATCCTGCATAGCGACTGGTACCGTGAGTTGCATGGGAAGTGAAGCCTTCGGAGCGTCAATCAAACGAGAGCAGTTTCGGCGAAATCGGACAAGGATCAAGCAGGGAATGAAGCATGGGATTGAACAAGGACGCCAAAAAGGATCGAGGAAGGGAAACCCGACATCGCGAAGGAAATGTTGATGAAAGGGTAGGATATCGACACGATCCACGAACTGACCGGGCTGCCGGCGGAAAAGATCGAACAGCCGAAGAAGTCAACCCGCCTTTGCATTGTCGTCGACCTCCAATCATGCAAAAAACCCGGGGGATCGACGACAATGGTTTTTGACGCTCCAAGCCTACAGCCATCACGATTGAAAGTCATTGACAGAATTTTTGAAACGTGCTATGCTGAAAATAGCTCCAAACCGAAAAGCTTGATGGAACAAGCCTTTTTGGG # Right flank : CTAATGAAGCTAAAGGAGCATTCCCGTTAGGAGCTTTTCCGGGGACTTGATCAAAAAAAGCCCTCTTGGTATGATGCAGGGGTGTCAAACAATACCTACCATCATGCCAAGGAGGACTTCAGATGAATTGTACACAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 9068-11832 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTK01000042.1 Geobacillus stearothermophilus strain FHS-PCGT134 scaffold_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 9068 30 100.0 35 .............................. AAAGTTTATGATTAAAAAAGCGATAGCGTTTATCG 9133 30 100.0 38 .............................. GGCACCGGGTAGGCCGTCCGCCGGATTGGCGGGAAATC 9201 30 100.0 36 .............................. GAACGCATGGCGCTGACCAAGCTCAGCCCCATCCAA 9267 30 100.0 37 .............................. TCTACATCCGGCTTACTTGTTGGCCGTAGCTGCCCAG 9334 30 100.0 36 .............................. GGAGATACTGGTGTTCTAGGAATGTACCCAGTATCG 9400 30 100.0 35 .............................. TGCGTATAGGAGCAACATTTCCGCCTGGGTTTTTG 9465 30 100.0 39 .............................. TGGGATAAAGCGGCGGAAAAATCCATGTGGCTCATGAAA 9534 30 100.0 37 .............................. CAATTCCTCGGTTTCCCAATCATCATCCCAATCGTCA 9601 30 100.0 37 .............................. CGGATATGGAGCTAACTCTCCGGTTATGGGCTGGATT 9668 30 100.0 39 .............................. CCATCTCCACACAAAAAGCGATATTCGTCATTCGTTTAC 9737 30 100.0 37 .............................. CTTGAGCGGCGCATCCTCGCCTCTCTCGCTTGCTTTC 9804 30 100.0 37 .............................. CAAAATTGATCGCATATTCTTCGGATTCAATCGGCAC 9871 30 100.0 36 .............................. CGTACCTCCTTCTCCATCATTTCTCGGAGGAGATCA 9937 30 100.0 35 .............................. ATCGCATAATGTCTTTTCGTTTTGAGCGCCTCCTC 10002 30 100.0 35 .............................. TTTTTTAGCTTGTAAGCATCATCGAGAGCCTCATT 10067 30 100.0 35 .............................. TGATAAGTCAGTCCGGCGATTTCCCGCCAATCCGG 10132 30 100.0 35 .............................. TAGCGCCACAACAAATAACAGCGACACTGTAAAAA 10197 30 100.0 36 .............................. AATCGTGGGTGTTTGATGAAGTCCTCCCAACCATCC 10263 30 100.0 38 .............................. TTGGGGATATCGAAAAATACCGCTTCAAAGGCGTGATT 10331 30 100.0 36 .............................. ATAAAAGCCGCATAGCTAAAAAATGCTTGATACATC 10397 30 100.0 35 .............................. TGCAGCCGTTCCTTGTCCGTCATCGCCGTTTCAAA 10462 30 100.0 38 .............................. AAAGATGCTGCACTTTCTATTTTGGCAGCAGTCGCAGG 10530 30 100.0 36 .............................. GTAATCGTTGAAGTGACATAACCATTCCTCCTTCTG 10596 30 100.0 38 .............................. GCTGTTCCGGTTGGTGATGCTTGGGCGAATCCGTACAC 10664 30 100.0 37 .............................. TGGACAGTGAATTTGCGACGGGCGTTTTCGCAGTAGA 10731 30 100.0 36 .............................. ATTTCGGAAAAGCGGCCTGATGTATGCTCGAGCCAA 10797 30 100.0 35 .............................. AGATACAACAAACGTAAATCTTGATCCGTGAGTTT 10862 30 100.0 39 .............................. ATTCGCTCGCGCTTCAGAACAGGCTCAATTTCTCTCGCT 10931 30 100.0 38 .............................. CTCGCTTCGCACTTGCTTTGGTGAATCGTTCAATTTGC 10999 30 100.0 35 .............................. TCATACCCTCACCCCACTAAAACGCAAGTGATTCC 11064 30 100.0 40 .............................. GCTGGTTGTAAATCTCCATTTTCACGCGATAAATCTCTTT 11134 30 100.0 36 .............................. ACCAACGTATTTTTTCCAACAATACACGCTTTGCAA 11200 30 100.0 35 .............................. CGGCTTCAAAAGCTAAACGAGCCAGACCCATCGTA 11265 30 100.0 36 .............................. TTTCATCATCACATGCGGTTGAAATTCGATTGATAC 11331 30 100.0 37 .............................. ACCGCTATGTCGAATTAATCGAAACCATCAGCCGCGA 11398 30 100.0 36 .............................. CAGTTAGCACAAGAAACGGATACATCAGGAATGGAG 11464 30 100.0 41 .............................. GAAGCCACCCGTGGCGATGACATTGTGGTTGTCACGGTCGA 11535 30 100.0 39 .............................. AACTGGGGGAAATACAACCTCACTAAAGGCGGCAAGCCG 11604 30 100.0 37 .............................. ACAATCCGCAAACAGCGAACGCCGAGGGGTTCTACAA 11671 30 100.0 37 .............................. GATGTTAGGAACTAGCTTTTCGTTGCCCATGATTTCT 11738 30 100.0 36 .............................. CCTGTGACAATCCATTCAAAGGCTTCCATTTTCTCA 11804 29 90.0 0 ....C............A.......-.... | ========== ====== ====== ====== ============================== ========================================= ================== 42 30 99.8 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTATTTGCGGCGATCTGAAGAGGAGGAAGCAAAACGGCGACACGAGGGGAGCCAAATGGAAACGAAGGAAGCAAAGCGTGTGATGGAGCTCATCGTCTCATACGAACAGCGGGGGATGGAAAAGGGAATCCAACAAGGAATCGAACAGGGGTTAAAGCAAGGGATGAAGCAAGGACGCCAAGAAGGGATCGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGATACGATGTCGACACGATCCACGAACCGACCGGACTGCCGATGGAGAAGATTGAAAGGATGAAGGGGTGAGATGGTCCTTCGCCGTCAAGCCCCACATTGTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTAGCGCCTCAAGCCTACAGCCATCAAGGTTGAAATCCGTTGACAGAATTTTTGAAACGTGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGGG # Right flank : CCTGCGCTAACGTCATAAAACGTTCGGCGCTTTTTTGTTTTCGCCGGACTTATGGGGAGTTGCATGTCTTGTAGTAGTATCGTAATTATGAATTTTATAAAAAACAATCTCGTTTTTTATACCATTTTTTTGTCTATATGGTATAATTAGATTAGTCCAAACGATGCGGAGGGGTGATAGATTGATCGAAGCAATCGCCCGAATCGGAAAGATGGTGCTCGAGAAGCAAGGAGAAGTGTCGGTCATTGATCAGCTGGTTGAGAATCCAGGTTATCCTTCTTGTGTGCTCATTTCATTGCGTGTGGATGGTGAGGGAAACGCTGTCTGGGAAGGATGCGAGGTTGAGGAATGCGGAAGTGATTATAAGAAATATTTGTTTCGTTCCGGATCAACGCGCGGAATCAATTATTCTCCGACAGCGAGAATTACGACGATCGAAAATACATATGATCAAAAAGTTCTCGGATGGTTTCGCAAAGTGAATCGGGTGATGGATGACC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 20544-22692 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTK01000042.1 Geobacillus stearothermophilus strain FHS-PCGT134 scaffold_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 20544 30 100.0 36 .............................. GCGACTCCCGAGATCGCTCTGTCGCTGGAGCCTCCG 20610 30 100.0 36 .............................. GCGACTCCCGAGATCGCTCTGTCGCTGGAGCCTCCA 20676 30 100.0 37 .............................. TCGCAAACGTATCGAAACTCATCCCGGAGATCCCAGC 20743 30 100.0 35 .............................. GACGAACTGAAAAACAAGCTACAAAATGAAAAGTA 20808 30 100.0 37 .............................. TCGATAAAAATCATCCGGGATACCCGGCAAATTCAGT 20875 30 100.0 36 .............................. AACAAAAAGGAAGAGGAAATTTACAGTCAATTGAAC 20941 30 100.0 38 .............................. AGTAGTAGCCATCTAAATACGATTCGCCTAGAACGTCA 21009 30 100.0 36 .............................. TTTATTTTCTCCTTTATATCTTTTCTTCAAATTTTT 21075 30 100.0 38 .............................. AGAAAAGGCTCGCTTGCTGGAGTCGATGGGCGCTTACA 21143 30 100.0 36 .............................. CGAAAAGCGCAAGCTGAAAACGGCGAGGAGGATCCG 21209 30 100.0 36 .............................. CCGCTAATCTTATTATAATCCTTTGCGTTTCATTTG 21275 30 100.0 37 .............................. AATCAACAAACAATCTCCTTACAAAAGATCGTGAACG 21342 30 100.0 36 .............................. CCTCTACGAGATACAAAATGTCGCCTAGATTTTCGC 21408 30 100.0 38 .............................. AGTCTATTTGTCTAGCATACTTTTTCGTTTTTGTCAAT 21476 30 100.0 38 .............................. CAGAATACCAAATCACTCTGTATATAAAGAACAGCTAA 21544 30 100.0 35 .............................. CTGCCGATCATAATCATAATCGCGCCGCCGGTCAT 21609 30 100.0 36 .............................. TCGACCTACTTAGACCATTTTCCCCGCCCTTTGTAC 21675 30 100.0 36 .............................. CTCGTTGAATGTGTCCATTGCCCACATGACGTAAGA 21741 30 100.0 35 .............................. ATATTTCGAAATCCAGATTTCGCTTTTCACTACTC 21806 30 100.0 35 .............................. CAAGTTTACGGAAGAGCAAAGGAAGCGTGTTTCTG 21871 30 100.0 35 .............................. AGCTGAGTGTCAGCGAACTGGGAGTTGAACACGTC 21936 30 100.0 35 .............................. AGTATCTGTATCGTCTCCTGCGTCGCCACGTACGC 22001 30 100.0 36 .............................. ATCAATCGCCTGAGCAAATCGCCATTTCCGCATCCA 22067 30 100.0 36 .............................. TTCATAACCATACCTCCTACATTTTGTTTTTGTTGC 22133 30 100.0 37 .............................. GAATGGAATCGCCCCATCTTCCATCATCGGTGGTACA 22200 30 100.0 37 .............................. TATCTCGTTTCTGCCAGTCTTCTAGTCCTTCTGGTAT 22267 30 100.0 35 .............................. CTCCTTCATCTTTGAAGAATCCGCGGTATGTATAC 22332 30 100.0 36 .............................. ACGGACGCCAATGCGGATTCCACTCACGAAGTTTAC 22398 30 100.0 36 .............................. GTAGATCGGCGTCAAGAAATTATCCAACAACTCAAT 22464 30 100.0 37 .............................. AAAGGTATTCAGCAAAAGTTGGATGCAGTCGTTGAGC 22531 30 100.0 36 .............................. ACAGAACAGACGAGAAAGGGCATCAAGAAGTACGGC 22597 30 100.0 36 .............................. CCTTGCTTCGGCTTCTGATGATGTAGCGGAATTCAT 22663 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 33 30 100.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAAACGTTCGACGGAAGAAAGAAAACGCAATTTTTTGACCCCGATGATGAGGTGTTCCCCCACCTGATTGAATTGAATTTCCGTCATAAATATGAAGCGTACTACGGCGTTCCGCCGACGGAAAGACTGTTGATCGAGCCGGTTCACGTTCATCATCGTCATCGTGTGGTGACAATGTTCAAGAATATGTATATTACAGGGTGGCTTGGCTATTACCGCCTCTGTTCTTCACCAGAACAGTTGACATTTTTATATCATGTCGGTCTAGGTGGCCGAAATTCACAAGGATTCGGCATGTTTCGCCTTAAAAGCGAATAAACGGGTCAAGAGATTGTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTAGCGCCTCAAGCCTACAGCCATCAAGGTTGAAAGCCGTTGACAGAATTTTTGAAACGTGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGGG # Right flank : CTTTGGCGTTTCTTCTCTACCTTCATTGTAAATTATCACTTTATTTCGGAACAAAAGAGACATTTTTTTGCACATTCCTTCAGAAAGCCCTCTCCCCTTTTCTGAAAGAATGTGCTAAATTTTTTGTGAATTATTTCGGAAGAGAAAATCCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 34571-35900 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTK01000008.1 Geobacillus stearothermophilus strain FHS-PCGT134 scaffold_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 34571 37 100.0 33 ..................................... TTGTGACGACAGCGCCTCTACACGCCCAACTAC 34641 37 100.0 34 ..................................... ATAAGGTCGTGATCGACATTGCTCACCGTCGTTC 34712 37 100.0 35 ..................................... TCGACTGTTGCGACTATTGCCTTGCCCGCGCTCGT 34784 37 100.0 34 ..................................... GCTTCCAGAGGAAAAAAGAAAACTTGTGCAGCTC 34855 37 100.0 35 ..................................... CCTTTCGCTGTTTTGCTTTGAATTTCGATAATGCG 34927 37 100.0 34 ..................................... GAGAATGGCCGAAAATAAAAAGGAGCGGGCTTAA 34998 37 100.0 34 ..................................... CATAAGGATCTCTCCTCCAATACTCCCCGACTCC 35069 37 100.0 35 ..................................... TCGATCCGGCTGTAATATTGCGCGTCTGCGGATGT 35141 37 100.0 36 ..................................... TTTGAAACAACCTTAAACGCCATCAAAACTACATTT 35214 37 100.0 34 ..................................... TCATACACCTGCGTGCAGAACTCACCCTAATTCC 35285 37 100.0 36 ..................................... AAGGCAGGTGACAGCATGAACACCATTCAGGATCAA 35358 37 100.0 35 ..................................... TATTACCCTCGCAAGAAAAACGCCACAGAAGCCAA 35430 37 100.0 36 ..................................... AGAACACCAAGTGGCTTCCCGGCCAGGTCGTACAGC 35503 37 100.0 35 ..................................... CTATAATCGACAATACAATGCCAATGGATGCAACG 35575 37 100.0 35 ..................................... TCTGGTATTGGTCTGTTCAAATTGAGCGCTTCGTC 35647 37 100.0 37 ..................................... CGCATGCTGATCTGGAAAGGATGTGGGGTCATGGTTT 35721 37 100.0 34 ..................................... CCGCTCGCTTGCCGAGCTGTCCGAACCGTTGGCC 35792 37 100.0 35 ..................................... ACAAGGAAATTTGCGCTATTATCGACGACGTGTCC 35864 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 19 37 100.0 35 GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Left flank : TGATGTAGAAACATTAGAACCAAGCGGTCAAAAACGGTTGCGAAAAGTGGCGACCATTTGCCAAAATTTTGGTCAGCGGGTGCAAAAATCAGTGTTCGAATGCAGCGTTAGTCAAGCGCAGCTAGAAGAAATGGAGCATCAATTGTTGCGCGTCATTGACTTGGAAAAAGATAGTTTGCGGATATATACATTGTACGGCAGCCGGTCAAAGGCGGTTCGTGTCTATGGAAAAGATTATTACGTTGATTATAATGATCCCATCATTTTGTAATGACAAAGATGACAAAATGCCGATGATATGTGCGGCAAGAAGAGAATGATGCGCGAACATAAAGCGATGCTGAAAAAGAAGGGGGATCGCGATGGGCGGAAAAGCTGGTTATAAAGCCGAAGAGGGAAAATGGATCTGTGATCATTATGACTTTGCCCCAAACAGAATGCGTAAGTTCGCGTTTTTATATCTTGAAATGCGCTCAACACAAGATATCTAAACGCGGGCG # Right flank : CAAATTTGGTCAGGCCAAGCAGGAATTTGCCGCTTGCTGTCGAATTCATGTTCACGAAAATTGTTGCTTCACCTTTTCCACATCTTCTTGAAACTTCTCATGTGTTTTCGCCAGCACTTCTTCGAAGACGCCGTCGAGCCGCTGTTCGAGGACGGCGATTCCTTCCCCGGTGATTCCGCCTTTGACGCACACTTTTTCCTGCAGCGTCGGGAGCGTGTACAAGTTTTGCTTCATCAATTCCGCGAAGCCGATGATCATGTCGGTCACCAGCATCGTCGCCTGTTCTTTCGTGATGGCGGTTTTGGCCGCTGCGGCGTCGATGAAGCGTTGCAGCAAATAGCTGAAAAACGCCGGACCGCAGCTGGAGATGTCGGAAGCGACGCGGGTGATGGCCTCATCGATATACACCGGCGAGGCGATGCGCCGGAGAAGATCATCGATCGTTTGCCAGCAGTCGGCCGAACAGCGTGATCCGATTGTGATGAGTATGCTGCCGGAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.20,-15.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 4480-4184 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTK01000104.1 Geobacillus stearothermophilus strain FHS-PCGT134 scaffold_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4479 30 100.0 37 .............................. ATAAGTGAGAACCGTGAATTGAGGAGTAGCTTTTTCC 4412 30 100.0 39 .............................. CTCGATTGTTGCGACTATGCCACTTACCGCGCTCGTACG 4343 30 100.0 36 .............................. CACCTGCGGAGTGGGTAGCGGCTTTGCAAGAAAACC 4277 30 96.7 35 ................C............. CGGAGTCGGCCGCTTTCTCCACGCGTTTCCGCCCA 4212 29 73.3 0 ......G...CG.....A..A.GC-..... | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 94.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GCGCACCCTAGGTCTGTAAGATATCCACAAAACTGAAAAAGGATGTAAGGGATTTTGTCGAAAAATATTTTTTGGACACCCCTGAGGGGCCGAAAAGCCTTGATAAATCAACATTTCTAGAGGGAGGAATAATGATGAAAGGCA # Right flank : CCTCTTCAATGTCACGCCATCGTATGAACGTCTTCCGTTTGAAGAAACCGGATGGCTGCACTTCCCCGATCGACCGCTTCGTTTTGCTTCGGCTGCTCATTCTTGCGCCGCTTGCTTTGCAGGAAGCCGCTTTTTTGTTTCGCACATGGAGAACGTTTTGGCATCTGCTTTTTTTGTATGGCCCCATTGATCCACCAGGCATGGTTGTTCACTGCCTTTCTTTGCCGCTGCTGCATTTCCTCAGTCCGATGCGATATACTTGACATGGGAACAATCACGCTTCTTTCTCGTTCACCGTCGTGTCGGCGGACATGCTGCGTTGGCGTTGGACGGTTTGAAAGAAGGCGGAGAAAAGCGACAGGGGTGGGATGGATGCGCCGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAGTCACCGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGGGAAGATATGAATGAGCG # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //