Array 1 235309-233753 **** Predicted by CRISPRDetect 2.4 *** >NC_016612.1 Klebsiella michiganensis KCTC 1686, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 235308 29 100.0 32 ............................. GAAGCGCTCAAAGAGATACTTATCACCGGCAA 235247 29 100.0 32 ............................. CGAAGGCTTAACACAAGCGAGTTTTTCAGAGA 235186 29 100.0 32 ............................. ATATGCCGATCCCGGTTGATACTGGCATGGAA 235125 29 100.0 32 ............................. CTACGAGGGGGATTCTGGCAGCACTATCAGCC 235064 29 100.0 32 ............................. AACCCGTCAGACAGTGGGCCTGATACGAAAGA 235003 29 100.0 33 ............................. GAGTTCAACGAGACCGATCGCACCGGAACCGGC 234941 29 100.0 32 ............................. GTTGAGTACTCAAATAGATATGAGTCTATGAG 234880 29 100.0 32 ............................. CCGTTTGGCCACTCATCGAAGCGGTCACGAAA 234819 29 96.6 32 ............................A ATTGTCTTGCCGTAAGCCCAGAGACTTCTCCC 234758 29 100.0 33 ............................. GTTTTTTTTGCCATAATTAACTCCGAAAATAGT 234696 29 100.0 32 ............................. CGGGGATAGAGGATTTCCGTTTTCACGACCTC 234635 29 100.0 32 ............................. GGTTTCGACTACTCCATGAATACCGTCTCCTC 234574 29 100.0 32 ............................. TTGACGGGAGGGTATGGTCTGCGATTGTCATT 234513 29 100.0 32 ............................. GCACAACGGAATACTTGTCACTGACTATAGCT 234452 29 100.0 32 ............................. AAAATCCAGCAACACTTACATCAACCTGAGGC 234391 29 100.0 32 ............................. TGTTCGATAACTTCTGATTTACGCATGGTTCC 234330 29 100.0 32 ............................. AGCAGCGCGCTAACTGGTTCCAGATGGCACAG 234269 29 100.0 32 ............................. GGCCAGGCGGTCGTAGGGGCGAATCAGTGAAT 234208 29 100.0 32 ............................. AACGTAAACGGGCTGGGCTTTACTGAGCGGAT 234147 29 100.0 32 ............................. AGATTGATGCAGACATAGCGAAGGCGGAAGAA 234086 29 100.0 32 ............................. ATTACGCAGGTCTTCACGCAGCGGCGCGGCAC 234025 29 100.0 32 ............................. TCGCGACAGATTGGGGCGACCTGGTATTTTGC 233964 29 100.0 32 ............................. TCTTCAGAGCGCACCCTTGCTGTTCAGGCTGC 233903 29 96.6 32 ............T................ CAATGGTAACAAGTGATCCGAGCGCAATCATC 233842 29 96.6 32 .............T............... GACTCACGAAACGCTTGGTTGATGTCTGAATG 233781 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACATCGCCTGATGGCTACGGGAAAGGCGCAGGGGCTCTATTTTGGTCTGCCGACGATGGCGACGGCGAATGCCATGTTCGATCGTATGTCGGAGAGCTGGCTGGCGTTGTATCAACCCGGTTCACGGCCAAGCCTGGTGCTGGCGCATAGCGCACGTGGATTAATGGATCGCTTCAATCAGTCTTTGTGGTCGGGAGATTTATCGGGTTCAGAAGAACCCGATGAGCTCCAGCCATCCAGCCAGGGATGCGCCGCCTGGTTTGCCGACAGTAATAAAAAAGCGCTGTTGGCCGAGGTGGGCGTTGGCACGCTCGATCAGGCGATGATGGCGGTGATGCCGTTTAAACACAATAACCTGCGGATGTTAGGGCTGAATAATAAAATCTTGCTGGCGGATGAGATTCACGCCTATGACGCCTATATGTCGCGGATTCTGGAAAGTCTGATTGAAAAACAGGCCAGCGATGGCAATACCACGATTTTACTTTCCGCCACGCTCT # Right flank : CCCGGAGGAAACGTGGCAACAGTTCAATACACGTGTTCCCCGCGCCGCCATCCTTATTATCCTGTACTTTATTTTTTCCAGCATTCTTTAGTGTGGCAAAGTCCGCTTCCAGGTAATACTTGCCAAATTTTGGGCTCATGGGAACAGTGCGCCGTTTTTAACATAGCGCTTATACCGATGTTTTACCGATGCTGGGTTCCGAGCCCAAATCCAACCCGTCCTGCCAGACGCGCTGCCAGATATAAACCTGGCTGTCGGCGATGGATCGCGTGCTGGCAGCCAGTAGCAACAATGGTATTAAAAAATGAAAACGCATCATGGCGACAGTCCTTGTTGCCTGATTTTATCGTTAGTCTATTTTGAGGCGGGTCTCTTCTCCGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACTTTCATTACATCGCGTCCGCGATGCTCAATACGCCCCGGCAGCGCTTTATCAATATACTGCAGGTTATCCAGCTGTACGTCATGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3413123-3414831 **** Predicted by CRISPRDetect 2.4 *** >NC_016612.1 Klebsiella michiganensis KCTC 1686, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3413123 28 100.0 32 ............................ TATAACTCGGCCACAGGTCGGCTTATCCTGAA 3413183 28 100.0 32 ............................ ATCAGGCAAAACATTTCCTGCATGTTCGCGAT 3413243 28 100.0 32 ............................ TGATCCGCAGATTGTACCGGCGTCGACCACAG 3413303 28 100.0 32 ............................ AGACCGATTTTATCAGCCAGGGGGATGATCAC 3413363 28 100.0 32 ............................ ATGTACTGTGCCAGCAGCTGAATGCGGAAGGG 3413423 28 100.0 32 ............................ GCAGTGTCGCGTTCCAGAAACAGCCTGATTTT 3413483 28 100.0 32 ............................ AATATAAATTGCCTGAATTTCTTGCGCGTACT 3413543 28 96.4 32 ......................C..... ATTTGCCGAAAATGCTGCCGCAGTTGTATTTG 3413603 28 100.0 32 ............................ AGTATCCTAAAGAACCGTTGCGGCGGCGGTTG 3413663 28 100.0 33 ............................ TCTACGTACAGCAGAGTAAAGCATGAAGTCAGA 3413724 28 100.0 32 ............................ TTCCTGGTTTCACCATCTACAGCTTTCACCTG 3413784 28 100.0 32 ............................ TTCAGGGATATTCGCGATGTCCGCCTGAGCAG 3413844 28 100.0 32 ............................ ACAAGTTGTAGGCGGCCATCAGGTAGAATTTT 3413904 28 100.0 32 ............................ ACACCAAAATGGCTTCATGGCTCATTGAGTGG 3413964 28 100.0 32 ............................ ATCAGAGTGCCGGCAGCTTTATCGCCGGCACG 3414024 28 100.0 32 ............................ TCAGAGCGGTGATTTCTGCGAAGGTTGTAGAT 3414084 28 100.0 32 ............................ TTACAGGTGACATCGCACACCCCTGATACCTC 3414144 28 100.0 32 ............................ TGTGGCAGCCGAACAAAAACGGCGACGGGATT 3414204 28 100.0 32 ............................ AGTGCAGCAAACCAGAGAAGGGCGCGCCGGCT 3414264 28 100.0 32 ............................ AGAAGAAAAGGCAGACCCGATCAACGAAGAGA 3414324 28 100.0 32 ............................ GTATTCGGTCCAGTGCCTGATGGCGCGGATGC 3414384 28 100.0 32 ............................ CGCCGCGAAACTGGGCCACGCCTTCAGCTGCT 3414444 28 100.0 32 ............................ ACCAACAAACTGCAGGCAGAGCAGAAAGCCGC 3414504 28 96.4 32 ............G............... ATACGCCGTGATGAACTGAACGGAATCCCGAT 3414564 28 96.4 32 ............G............... AAACTTCGCGCGGATTTCAGCGATTTTGTTTA 3414624 28 96.4 32 ............G............... CGCTACTCCGCAAAAATGAAATTCGTGTGCTG 3414684 28 100.0 32 ............................ ATGTTGCGGAGAATCCACAGCCTGTTCTCAGT 3414744 28 100.0 32 ............................ TGCACGAAATCAACGTTGCCCGCTCGGTTGCC 3414804 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGTTATCCATCAGGTGGTGGATAAATTTATCGTCGAGCTGCAGGTTCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTCAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCAATGGCGCGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAATGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGACAGGTGACCGTTGAACTGGATAAAGAGAAAAATGCGCTGACCTACGACTTCCAGAGTGCGCAGAAGCACAAACCGGAAGCTGCGCATTAAGTTTCGGTACTCAGTGACAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCTATGTCCTGGACCCTTTTTTATTCCACTTTTTAACTTGTTGATTTTAATAAAGAGAAAATATAGCGTAAAATTATGGTGGCAGAGAGGATGTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTTGTTCGTTCA # Right flank : AAGAGCTTGCCCACACTGCTGTGCAAGCCAAACGAGTCTAAAGAAATTGCCAAAGTAATAGGTTATTTTGCAAGTTGCGATGAATGTCACCGTATTGCATCTAATATACTGTTTTTATAAACAGCTATCGACTTTGAGCCACAGGATGTGACTATGCCCGCGAAGTATATTGCCCCCTCGGATTTAAAAACGATACTCCATTCAAAACGCGCCAACATTTACTATCTGGAAAAGTGTCGTGTGCAGGTTAATGGGGGGAGAGTGGAGTATGTTACCAGTGAGGGGCATGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCCATTATGCTAGGAATGGGAACCTCTGTTAGCCAGGCAGCGATGCGTGAGTTCGCCCGCGCGGGTGTGATGGTAGGTTTTTGTGGTACGGATGGCACACCTTTATATGCCGCCAATGAAGTCGATATCGACGTTTCCTGGCTATCGCCACAAAGTGAATATCGACCAACGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //