Array 1 173248-175266 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSWP01000001.1 Haemophilus parainfluenzae strain M11360 M11360_HUY3124A68_cleaned_ctg_1895, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 173248 36 91.7 30 ..AA..A............................. GGCGTTATCTACCGGAACAGGCAAACAAGA 173314 36 100.0 30 .................................... GCAATCACAATATCCATCGAGCGCAATTGG 173380 36 100.0 30 .................................... TAAAAAACCGCACTCTGTTTCCAAAGTGCG 173446 36 100.0 30 .................................... AGCCAATCTTGTTTTATCTTCCAATTCTTT 173512 36 100.0 30 .................................... TCACGGCGACTTATCATGGGCAATTATGAA 173578 36 100.0 30 .................................... GCCTAATCGAGCAAATTGACAGCCACGCGG 173644 36 100.0 30 .................................... TTTTTGCGTTCCCAAGTCTGGACGACTTGA 173710 36 100.0 30 .................................... GCTTACGTAATTTTTTAATATCGCCTTTCA 173776 36 100.0 30 .................................... GCAATCACAATATCCATCGAGCGCAATTGG 173842 36 100.0 30 .................................... TAAAAAACCGCACTCTGTTTCCAAAGTGCG 173908 36 100.0 30 .................................... AGCCAATCTTGTTTTATCTTCCAATTCTTT 173974 36 100.0 30 .................................... GTTATGTCTGGCGTATTGTGGCAACAAAAT 174040 36 100.0 30 .................................... CCACATCGGCACAGAATAACGTGCAGTTTC 174106 36 100.0 30 .................................... GCAATCCGTTGAAGTGCAAGGCGAGTTTAT 174172 36 100.0 30 .................................... TGTTTCAACGCTTCATTCAAAACAGTAAAA 174238 36 100.0 30 .................................... CAGGAGGCAAACGATACTTACTCAAATCTT 174304 36 100.0 30 .................................... GCAAGTTGAGTTATACAATGTCTATGCCGG 174370 36 100.0 30 .................................... TGAACAAAACGCAATGATCGAGCTTTGGGA 174436 36 100.0 30 .................................... GAGGTGAAAATGGAAGTGCACATTAATGGG 174502 36 100.0 30 .................................... CCGTTTTTCAGCGTTCTGCCTTTCGTCATT 174568 36 100.0 30 .................................... AATTAGGAATAAGTTTCGCACTCATATCTG 174634 36 100.0 30 .................................... CATGGTTCAAAACATTTGACATAGCAATTT 174700 36 100.0 30 .................................... TTTATTTCGGTCATACACTGACAACATCTG 174766 36 100.0 30 .................................... ATCTTAACTTTAAATACTTTAGAGCAAGCA 174832 36 100.0 31 .................................... TTTTATTAGCGTTAATTGCTATGCGTATTTA 174899 36 100.0 31 .................................... TTATCAACGCTCGGGAATCCACCAAAATTGA 174966 36 100.0 30 .................................... TGTTTGGATTGAGCAGATAACAAGGCTTGA 175032 36 100.0 30 .................................... AGATTTTGAGATTGCTCCCGGTGCAATCAT 175098 36 100.0 31 .................................... TTGGCCGTTCTCTCTTGATTTATCTTCGCTT 175165 36 100.0 30 .................................... GGATTGAATAGCCTTATTTTCATCTACCAC 175231 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.7 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : GTCTTACTATTGGTGAAGTAAAAGATGATGAATTCTGCGTGAATTTAATCCCTGAAACTTTACACCGAACCTTGATCGGTAAACGCCAAATTGGCGATTTAGTAAATATTGAAATCGATCCGCAAACGCAAGCGATTGTGGATACAGTGGAGAATTATTTAAAAGCAAGAGGGATATAGTTAATTAAGATTACTATAAGGAGGAAATATGTTTAAAGATGAAATTGCTCTTATTCGCTTTTTAGGCAGAGAGTTTATTGCCATATTTAATGTGTTTTTTCTATTTCCGCTTTCAATTATTTTAGTGCTGATTGGCGTTATTAATGGTGTAATATGGAATGTACTTTTAGGTATTGCATTTACTTACCTCGTATTTCTTGTCTTATTTAGGATATTAATCTATTTTTTATATAAAAAATGGGAGAGAGAGTATCAGAAACAGATGCGAGAAGAGAATAAAGTTAAATACATTATTATTAAATAATAAATTTATACTGTATT # Right flank : TAGGGACGGCAAAAAGCCCCATACCGCAAGGTTTAGGGGCTTTTGTTTTATCTAAAAAAACGGTTAAAAAAGCAGTAATTGATTTGAATTGACCTTTTTTTCTTGCGTTTTTTTCTCTCCCACTAAAATTTCCATGCTCGCAAATTGTTTTTCTGTAATAGATAAACATCGAATTGAGCCCTCTTCAGGTAAGTGTGCGACGAGCCTTTTATGATGTTTTTCTAAAGCATCTCGCCCTTTAATAATTCGAGTGTAAATAGAAAGTTGCAACATTTGATAACCATCTTTAAGTAAAAATTGACGAAATTGGTTTGCAGCCCGCATTTTTGCTTTAGTGGTAACCGGTAAATCGAATAAAACGATCATACGCATAAATACCTCCTCACTCATATTGATATTCCTGCAATGTATCGATCTCTGGTAACTGCAATAATGTTGCACTTTTTTGAATAAGTGCAATTTGTAAAGAGGCAATGGTTTTATCAATAGCAGTCAAAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //