Array 1 193513-196054 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOME01000076.1 Halococcus salifodinae DSM 8989 contig_76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 193513 30 100.0 35 .............................. CAGAAGGTTACTGAGGTCATGGCAGAAGGTGACAG 193578 25 83.3 0 .........................----- - Deletion [193598] 193603 30 90.0 35 .AAN.......................... CAGAAGGTTACTGAGGTCATGGCAGAAGGTGACAG 193668 30 100.0 35 .............................. TTCGTGAAAGACTTCCGCCGATATTGCCGCTGTTG 193733 30 100.0 34 .............................. GCCGTATATCTCGACTTCACACGCACCGTCAGTA 193797 30 100.0 33 .............................. CTGAGTCTCGTCGCGCGTCGGTATCAGGAATGG 193860 30 100.0 36 .............................. CATCCCCATCACCGGAGACTGGATTGCCATGTCAGA 193926 30 100.0 34 .............................. CTTGCTGGACCGCATACCCCCCTTAGTGCTGGTT 193990 30 100.0 35 .............................. GACTGGCAGGCGCTCATCATCCTGCTCGCGCTCGA 194055 30 100.0 38 .............................. AAACTCGGCCACCGGCGCGAGAAGGACGTGCCGACGGT 194123 30 100.0 35 .............................. TACGGGATGGAAGGTAATGATGTAATGATGGCTGG 194188 30 90.0 0 ........................N..C.A - Deletion [194218] 194207 30 83.3 30 .GGGTN........................ TACGGGATGGAAGGTAATGATGTAATGATG 194272 30 100.0 36 .............................. GTCTTCGATGCGATCATGGCCGCTGCCGAAGGGCTC 194338 30 100.0 35 .............................. CGTTAGCAGCGGGGCTTCCAGCCATGTACGCGTTA 194403 30 100.0 33 .............................. CCAAAGGCAGCCTGAGCAACACAGAGAGAGTAT 194466 30 100.0 34 .............................. CGAAAGTCCTCGGCGTCCCACCTCGCCAGCCAGG 194530 30 100.0 35 .............................. GTCGGCCGACGCGGGCCTTGCCCCGTCATATATCA 194595 30 100.0 35 .............................. TCGCCCCCATCCCGCACCCCAGCCCCCGGATCGTC 194660 30 100.0 35 .............................. GTCTTACGCCGTATGGGACGAACCCCTACCGAAGC 194725 30 100.0 36 .............................. GTTCAAAGAGGCGTTTATCAACGGCAATCCAGTATC 194791 30 100.0 35 .............................. ATCAGTCGTCGCTCTCGTCCTCGTCCTCGTGCACG 194856 30 100.0 36 .............................. CGCTCTTCGAGTCGGCGCTTGTCCTCTTCTCTGACG 194922 30 100.0 34 .............................. CACTTCCGAGTTGATGCGCCTGACCCGCCACCGT 194986 30 100.0 35 .............................. GGGTTAGAGCATGACACGATGGAGAACCGAATCGC 195051 30 100.0 37 .............................. GGCTGGCTCTCCACGCAGGCGTCAAATGCGTGGGCGT 195118 30 100.0 36 .............................. CAGCGAGACGGACACGAAGATTGGATGTCCCGTTGT 195184 30 100.0 34 .............................. CACACGAGCCAACAGCCGTCCGTGCCGCGCGGCG 195248 30 100.0 35 .............................. GTCACGTTCGCCAGCGAATCGTTGGGGACGGTCGA 195313 30 100.0 36 .............................. GGCCTGTGGAGTTCGACCATCGGCTCTAAACCTGGA 195379 30 100.0 32 .............................. GTTCGATGCCATCAACCTCTACGCTAAAGAGA 195441 30 100.0 37 .............................. GGTCGTATTCTCGGTGGGCCGATCAGCGTCACTCATG 195508 30 100.0 35 .............................. GCACCACGCGACGGCGCGAACACGGAGTGTCTGTT 195573 30 100.0 33 .............................. GCGTGGGGCGTGGCCGCGAACAACTCCGACAGC 195636 30 100.0 34 .............................. TGTGGTTCCGTGCATTGGTATCTTAGTCTGTGCT 195700 30 100.0 35 .............................. GGCCACTGCGCGAAGCACCGGGGGATCGTGGATGA 195765 30 100.0 34 .............................. GTCCCGTCAACCAGCGAGTCGTTACCGACGCGAA 195829 30 100.0 36 .............................. ATTCGCTCGCGGAAGTTCCAGTACCCTGAGCGCATA 195895 30 100.0 35 .............................. GGTTAATTCATAACCACTCATACTATGTCTGACGA 195960 30 100.0 35 .............................. TGCTGGCGCTTCTGAGCCTGCCCGAGTGATGTCGA 196025 30 73.3 0 A..A.........T.....A.A.C..G.T. | ========== ====== ====== ====== ============================== ====================================== ================== 41 30 98.0 33 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : CCGGACCAGATGGGAAGGTTAATGACTCCGAGTCGAATATCAACGGACAGCCCGGGTGGCTTAGCTGGACATAGCGCCGCACTCATAGGGTTTCGAGACGGGCGTGATTCCCTTCGAGGCCGCCGCCTCGAACCTGGGACATGCGGAGATCGTGGGTTCGGAGCCCACCCCGGGCATTCTTCGGCGACGTGAAGCTCTCCGAGCTACTGCTGGCGGAGCTACTGCTGGCGGAGCTACTGCATCGCGATCGAAGCACCGCGGTACGTCGTCTCTGGGTACCGCGTGCATCTCATCGGGAGATGGCTCCACGACCCACCGCGAGAGCAGTCCCCGGCGACGAACGGTCCATAGCCAACGTGCGAACAGTCGATCGATCGTCCGCGTACGAGGGGACAGTGTGCTTCCATCGACCCACCGGGGTGCAGCGCGTATCGAACGTCGACGAAAACACTATGTCGTAGCTGGTGGATAGCACGGATATGTCCGGCATATCGGGCATG # Right flank : CTCACCGACCACCATCACCGATCGGTTCGGCTCCAACGACGGTCTGGGACACGTCGTCCACGCCGTCTCGATCCAGAATCCGGTCGGCACAGGCGAAGCCAGCGACGATCCCGCCGTTGAGGCTGCGCTCGGGATACTGTGCTCGACTCGCCATCCCCGCGTAGTAGAGCCCCGCCGCGACCTCGCTTCCGAGATCGTAGGGGATCACCATGTCGAGATAGCCGCGTTCGTAGACCGGTGCAGTGCGGGGATTTCGCGCGGTTTCGATCCAGTTCACGCTCCCGCGATCGAAGTCGGGAAACAGGTCCTCGATCCCGGTGAGCCACGTCTCCTCGACACCCTCGTCGTCCATCCGCCAGAGCGCTTCGTCGGAATCCTGAACGTAGCTCACGGCGTAGAGGAGGTGCTCGCCGCCGTACCGTTCTGCTGGGACGAAGTTGGTGTGTTCGATCAGCGCGCCGAAGGGCGCGTCGTCGGCGATGTTGAGCCAGTAGGTGTCC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [9-8] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //