Array 1 249024-252951 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKQX01000004.1 Klebsiella pneumoniae strain EuSCAPE_IT002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249024 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 249083 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 249144 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 249205 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 249266 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 249327 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 249388 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 249449 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 249510 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 249571 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 249632 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 249693 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 249754 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 249815 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 249876 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 249937 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 249998 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 250059 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 250120 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 250181 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 250242 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 250303 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 250364 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 250425 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 250486 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 250547 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 250608 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 250669 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 250730 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 250791 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 250852 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 250913 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 250974 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 251035 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 251096 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 251157 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 251218 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 251279 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 251340 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 251401 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 251462 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 251523 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 251584 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 251645 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 251706 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 251767 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 251828 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 251889 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 251950 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 252011 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 252072 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 252133 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 252194 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 252255 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 252316 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 252377 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 252438 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 252499 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 252560 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 252621 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 252682 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 252743 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 252804 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 252865 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 252923 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //