Array 1 36994-37359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNKT010000117.1 Lacticaseibacillus paracasei strain 1001095A_150126_G7 NODE_482_length_37378_cov_24.6072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 36994 36 100.0 30 .................................... TTAATAAGAGAACTGGAGGAACTAAGACAT 37060 36 100.0 30 .................................... AAATATTCCATAACCTCGTCATGGTGGTCG 37126 36 100.0 30 .................................... ACAGCCTGCTAAGAACAAGCAAGCACATTA 37192 36 100.0 30 .................................... TCGTGCTCGTGTTGCCGTATATGGTGACTG 37258 36 100.0 30 .................................... GGCTGTCTTGGGCTTCGATTCTGATAACTT 37324 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 32 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAAGATGGGGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATTGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGAAAGCTCGATCAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGGTCTCATTGAGTTCTCAAAAGTGAACCGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTTGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG # Right flank : TGTGCTAAACGCACTGACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 20-948 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNKT010000001.1 Lacticaseibacillus paracasei strain 1001095A_150126_G7 NODE_1_length_11998_cov_23.4629, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 .................................... TGGAGCGCGTCTTGTGCGCCATCGTTTGGC 86 36 100.0 30 .................................... GGATAGGCCTTGCCAGATGCCCTTAGCTAT 152 36 100.0 30 .................................... ACGGGGGTGTACATGCCGACTCTGATGCTA 218 36 100.0 30 .................................... GTGGATCTTGCCGCGAAGTACCCGCGTTCG 284 36 97.2 30 .............A...................... CGCACACGACAAAGAAACCTCCTAGGATAA 350 36 100.0 30 .................................... GAATATCAGGCAACGTGATCGTGCCTTTCT 416 36 100.0 30 .................................... TCTTCCATCCTTGGCAGCTTGGCCGCTATC 482 36 100.0 30 .................................... TGGCTGTTATACGTTTATCGAAAAGGGTGA 548 36 100.0 30 .................................... CTTCCGTGCCTTTTCGCTTCCCGGCAATAC 614 36 100.0 30 .................................... CCGCCTTGCCAGATGATCTGCCGGTGATTC 680 36 97.2 30 ........................G........... TTGCCGTCAATACTGTTCGCCCACGCGGTG 746 36 100.0 30 .................................... CCAAGGGCAGGTTTTCAACTGCCTTCTGGA 812 36 97.2 0 ...................C................ - Deletion [848] 848 35 75.0 30 -CAAA.....AT....A.G................. AGGAAATTCGAGTTCTTCCCGCAATTGATG 913 36 86.1 0 C............................G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 96.8 28 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : GGGATCAGCTACAATGCCTG # Right flank : CAAGCAGCAGTGATACTAAATTGAAGCTAAACTTGTCAAAAAGTGCCTCATCTTTTTGACAAAATAAGGTGTTTTACTATTTATTGTGTGAATCAAGCCCCGATATTTACAAAGCCGAATCTTTCAGCGGCCAACCTAAAAGCCGCTGTCTAAAGCAATATCGTAGTAACCACACACTCTCAAGCGGTGATATATCAATCAAAAACTAAGTGCTATCGACCTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAACGCGAAGGTCAAGATTAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //