Array 1 62-4109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOW01000068.1 Methanosarcina sp. 2.H.T.1A.15 scaffold111_1_size13521-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 62 37 100.0 38 ..................................... CCTGTGACTTTTCCAGATCTTTTTTCTTATCCAGCTTT 137 37 100.0 33 ..................................... ACTGTAGTGTAGATAACAAACTATAAATAACAT 207 37 100.0 37 ..................................... AGGATTGATGAACATGACTGGAAAAATAAAAATCACA 281 37 100.0 34 ..................................... CAAACGACACCCTGGGATAATCCGCCATTGAACC 352 37 100.0 37 ..................................... ATTAAGATCATCTCCTTTTAGAAGTCCGTTTCTTCGC 426 37 100.0 36 ..................................... CCGAGTTAGTGAGGACTTATAATATTGACAGAAAAG 499 37 100.0 36 ..................................... TCAGACTTGTACTTAGAATAGGCATCGGTGAATTTG 572 37 100.0 35 ..................................... TATCCCAGTTCAAGAGCCTTTTTGATTTCCGGGAA 644 37 100.0 34 ..................................... CGGTCTGTTTGCTTGTTATTGCCATAAATGAGAT 715 37 100.0 35 ..................................... ATCTTACCATTGAATGTTTCTACACTTTCCGCTAC 787 37 100.0 35 ..................................... CGCTTTTGTCACATAAATCATATTTGTCGGATAGT 859 37 100.0 35 ..................................... GTATGTATATTAAATTGTATATGTTATGTTATCTA 931 37 100.0 36 ..................................... ACACTACGGACAAAAGAGGACTTTGACATCAGAAGC 1004 37 100.0 35 ..................................... CTCGCATACACCATATATATCATGTTATCTCTCAT 1076 37 100.0 36 ..................................... TTTCTTACAGGGAAATATCTTGATGGATTGGATAAT 1149 37 100.0 37 ..................................... ATGCCTTGTGTGTGTGGCGAAAAACGAGAACTCGAAA 1223 37 100.0 37 ..................................... AACAACAGGATCAGCCCAGGAAGGAAAAGCCCAGGAA 1297 37 100.0 34 ..................................... GGATCATAAGTTGCCTGCTTTCCAGAGATCCACA 1368 37 100.0 37 ..................................... AACCCATGCCTCTCACCTAGCATCCGAGTATGAACCG 1442 37 100.0 35 ..................................... ATCCACATCTCTTTTCTTCTGTTTTTTCTTACTCT 1514 37 100.0 34 ..................................... TCTTTGCTTTCATAATCAGGCCTACTATGACACT 1585 37 100.0 36 ..................................... CCATTTTGTCCTCAATCCTTTCAGGGGGATTCCCAT 1658 37 100.0 36 ..................................... CATCTCCTGTAATCTTGCTTCGTTCACAATCCTTCT 1731 37 100.0 36 ..................................... TCACAGGACAAACTTCTGAATTCGGATGGCAGCCTG 1804 37 100.0 35 ..................................... CCTCTAAGAAGTTTGAAGTAATGGAGTATAGAGTC 1876 37 100.0 35 ..................................... CATTGAGTACAACCCATTGCCCATTCACGGGGGAT 1948 37 100.0 37 ..................................... AATGGGAGTTGAATTTTAATGAATATTGAAAAGAGTT 2022 37 100.0 35 ..................................... TTAGGAATTTGCCACTGACGGACTTTCACCGGAGG 2094 37 100.0 33 ..................................... TTTTTCCTGTCATGTTTATCAATCCCTAAAAAT 2164 37 100.0 45 ..................................... TTCTCTCGATGGTCCCCTTGTAAAACATGTAGGATACACGGATTC 2246 37 100.0 36 ..................................... AATAAAAAAGGGAAAATCCTTCTCGAAAACACCGGA 2319 37 100.0 35 ..................................... TTAATTATTCAAAACTATTCAAATTTGATATAATA 2391 37 100.0 34 ..................................... ATTTTTTGTATCGGTATATCAGGACGGGGGATTA 2462 37 100.0 34 ..................................... ATCCTCATCATTTCCATCACTGGAAAAGAGTTAG 2533 37 100.0 33 ..................................... AATTACAATCAACCGGCAGGAAATTATCATCAT 2603 37 100.0 37 ..................................... CCTAGTGGTGCGGCTTCTTCCTCTTATTCTTCGGGGG 2677 37 100.0 37 ..................................... AACAAACTCCATCTGTATACATCACTAATCACCAATT 2751 37 100.0 35 ..................................... GACATAGGGGTGACTATGTATGGACTTAACGGATA 2823 37 100.0 37 ..................................... AAAGAATAAACGGGGGATTATAAATGGAATGTATATA 2897 37 100.0 35 ..................................... ATGCTGGTGTGTCCCTGCTGCTACAGTACCGAATT 2969 37 100.0 37 ..................................... GGACCTGTTTGGCTCCTATCATGTACTTCCCGAGAAG 3043 37 100.0 35 ..................................... TGTTCAGATCAATTCTTGCAAAATCAATTGCTTGT 3115 37 100.0 39 ..................................... TACATTGAAAAGAACCCACTTCTCCAACCGTACACCGTG 3191 37 100.0 34 ..................................... TAGTGATGTTTGCAATCTCTGTAAACATTTCAAC 3262 37 100.0 34 ..................................... TTGGTCGAGGGTTTTGCAGTCACTCCACCATACA 3333 37 100.0 38 ..................................... TTCGGACCAAAACGCTTGACTCGTACGGCGTTCTCATT 3408 37 100.0 37 ..................................... CGGCTCGATGAAATGGAGTGCAGACGACACATACGCA 3482 37 100.0 38 ..................................... AACAACATGGTACGCAAAACCGCCAACACGCTTAAAAA 3557 37 100.0 38 ..................................... TCAAGAAGCAGTATAACGGGCGAATCTATACTATGATC 3632 37 100.0 36 ..................................... CACCTGTAAAACCATCTTAAATGAACATAGACCAGT 3705 37 100.0 39 ..................................... TGACAATAACCACGAAGGGAACCCCGTTCGATGAAGACG 3781 37 100.0 38 ..................................... TCTAGGGTTATGAAGCCTTCGCCTTCAAAATCGCCATA 3856 37 100.0 38 ..................................... ATTGCTAAGAGCCAAGACAAAAACATACAAAATTGAAT 3931 37 100.0 34 ..................................... TAAGACCCTAAGGTTTTACCAAGCCTTCTATAAA 4002 37 100.0 34 ..................................... CTGAATTTGATGGGGTAGGCGGCAGTTCAATCTC 4073 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 56 37 100.0 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AAGATCCACTAAAACAAGGATTGAAACTTGGAAACGGGACTGTAACAAGTGGAGCTATTAAA # Right flank : CTTCGGTGGAAACTGGATAAAAAACATTCATTCTTTGTCGAGAAGTAGCTCCAACTAATACAAGAACCAAGTTTCCACCCAAACTCACCAAAACCAAAAACCTAAAATAACCCCAGAAGTTATTCTCTAACAGGGAGAATAGCCATGACCAGCGAAACCGAAACTCCGGAATGTTGCCCTCCGTTTGATCCCGCCCCCTGGGATGGAAAAGTCTTTGATTGGAACAATAAAAGGTTCATCAGGGATTCCGTTACCACACAGAATTACATGCCCCTGAACTTCGGGGAAGTAATAATGAGGATGAACGAGAAAGTTGCCAGGGCTGGTGCGGAAATGCCTGACTGGCTCTGCCTGTCGGACCATACCTCTGAAAGCAATATGGACCTCTATCTGGCTGTTGACAGAGAGGTCGATGGGGCTGAAAATGTGACCCTGAGCGGGAAGTTTTTGAGCAAAGTGTATGAAGGGAATTTCGAAAAAACAGGAGAATGGTGCGGGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 4875-5709 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOW01000168.1 Methanosarcina sp. 2.H.T.1A.15 scaffold223_1_size5812-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 4875 30 100.0 40 .............................. TGTTTATATAGGGCCCGGCAATTGAGGATGTATCAGAAGA 4945 30 100.0 39 .............................. TCCGACAGAGCAGGGAGGGTGACAGAAAATTCAATACTG 5014 30 100.0 37 .............................. ACGTCTACTCCTACAGTGGTATCTTCAGTGAAAGGTT 5081 30 100.0 35 .............................. ATGATATAGTCAAAATAGAGAAGATCACAAAAACT 5146 30 100.0 36 .............................. GACGCATTAGACAATATTACGTCATTGATCCTTGAT 5212 30 100.0 37 .............................. ATGTTGTATATTCATTCAGTAATGTATATGCGGATTT 5279 30 100.0 36 .............................. GTTGTAAAACTTGTAAGCGCTTACTTACAAGTTTCA 5345 30 100.0 36 .............................. AACCTAATTCTTTGATACAGTTCAAAATCAAATTTA 5411 30 100.0 37 .............................. AGCCTCTTTGTAGCTCTCGATTTTGTATCCAAATCAG 5478 30 100.0 37 .............................. AAGCCTACTCGGTATAGTCAGTTAATCGCTATTCAGT 5545 30 100.0 35 .............................. ATAACCACGACACGTCTACATATGACGAGAGCATC 5610 30 96.7 40 ...........................T.. TTTTTTATAGAGTGATTCATCTATCTATGCGCTCCATCTC 5680 30 96.7 0 ...........................T.. | ========== ====== ====== ====== ============================== ======================================== ================== 13 30 99.5 37 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : CTGAACTGGGTTCAAAATAGTGTTTTTGAAGGTGAACTTACAAAAGCCGAATTCCTGAAAATTAAGTCAAGGCTTAAGGAACTAATTGAAGAAAGCCATGATCACATTATCTTCTACAGTTCCAGAGATAAAAAATACCTTGGAATAGAAAATCTCGGAACTCCAAAAGCAGATACAAGCAACATAATTTGATCTGCCACATCTGTGTATTTCACTACTTAAGCTTTCACGCAAGATCCAACACTTTATTTATATATTTATTATAACTCCACTGTCTGTAGATTCGGGTTCTTTTCTTTTTTCGTGGATCTTTATAAATGAAACGCCAGAAGAACGATCCCCGAGAATTCCTCTTGAATCTCCATTAAGAAAAGAATACTTTTATATTGTACAGCACCAAATACAATTGCCTAAAAACAGCATCATAAACCCGAATTATTCAGCTACCATTTGAAAGGATCCTGCATCTAATTTGCCTAAATTCGGGGAAAATTTCCTTG # Right flank : TTTTTTATAGAGTGATTCATCTATCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 13296-11933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOW01000218.1 Methanosarcina sp. 2.H.T.1A.15 scaffold114_1_size13350-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 13295 30 100.0 35 .............................. ACAGGCACAGACATTGACCCATTCAGACCAGATTG 13230 30 100.0 37 .............................. ATTGACGTGGAAGAAAAAAGAGACGACGAAGAAGATG 13163 30 100.0 36 .............................. TTCCTCTACCCCATGCCTATACGCTTCATATGCTGC 13097 30 100.0 37 .............................. ATTAAAGACCCCTCGCTCTATTAAAAAACGGTTAATC 13030 30 100.0 38 .............................. ATTTCCATTATAGAAGTTATCAATAGCTTTTATCCCTT 12962 30 100.0 37 .............................. AAAGCAGCTTTAGATGCAATCAAAAACGCCATTCCAG 12895 30 100.0 35 .............................. GAGCCTGATTTCTGCCTGCGTTGGTTGCGCCTCTG 12830 30 100.0 40 .............................. TTATGTGCCAATCTTCCCCGGACACTTTTTCCATATCTGA 12760 30 100.0 34 .............................. CTCCTAAAAAGCATGTTGAATTGAACCTTAAAAA 12696 30 100.0 35 .............................. GAGCTATGCAATACAGTACCCTACCTACCAAATCC 12631 30 100.0 40 .............................. GGGCTCCTATTTCGTCAACTGCAAAAAGAAGCGGAATATT 12561 30 100.0 38 .............................. GTAGAATCCAACCATATTGATCTTAATCCTGTATTCGC 12493 30 100.0 38 .............................. ACCTTCTTTATCAGCACATAACCAAGAACGGCTATAGC 12425 30 100.0 36 .............................. AGATTGATCAGAGCATAAGTGTCCTCGCCGTTGGAT 12359 30 100.0 36 .............................. GGATATCTGCAAGCTCTTCGTTAAGGTCAGCAGAGC 12293 30 100.0 36 .............................. AATTGAGACACATGGAGGAATCAAAATAGAAGAATA 12227 30 100.0 37 .............................. CTGATAGCTCCGTATAAGGTGGAGAGGGAGGGGGTTT 12160 30 100.0 36 .............................. ATTCGTTTAAATATTCCGAGAGGTTGCAGGCAGAGG 12094 30 100.0 37 .............................. ATTTAATATTGAATAATAAAATGGGGTCCGTTATAGC 12027 30 90.0 36 A.........T..........A........ CTATTCCGAAATGTTTATTATGTCCCTATAAAATTT 11961 29 80.0 0 ...........CT........TC..-..T. | ========== ====== ====== ====== ============================== ======================================== ================== 21 30 98.6 37 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : TAGAGGGATTGATACTTTTTTATAGAGTGATTCATCTATCTATGCGCTCCATCT # Right flank : CTTCAATTCACATTTAATCTTTTCTATTTAATGAAAAAGAAAAGTTACTTATTTGAATACCTTTCTCTATTTTGAAATATTATTATTTTGTGAAAGTGAAGATTTCTGGAAATGGAAGTAACAATAATGAGCCAGGGTTTTCTTTATACGTTTACTGGGAATCCTTTTGTGGATGCTGGTATATGGGCTATATGCGAGTGGTCGGGTAGAAAAAAGCCTGAAGAAATTACAGTGGAGGATCTCAGAGAAATTAAACAAGATGTGATCTCTGTATATTTAAGTCCGGAATGGGCAAAGAGCCTTTATTCTGTTTTTCCGAATAACGCGGTTACTAATCCCTCTGTGAAAAATAAGGATAAACGATTACTTGAATTTTTAGAGCAGCTAATTGGTCAGGTTGAATCTCAGGGAGGGTTAGGAGAGTTCGGTAACTGCATCTCTTGTGGGAGATATGATGTTGAGGACGTTAGGACAAAAACAGAAATTCCCCTCATAGGTTC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 17414-18345 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOW01000288.1 Methanosarcina sp. 2.H.T.1A.15 scaffold108_1_size18546-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================== ================== 17414 37 100.0 37 ..................................... ATTGTCTCTCTATATTATACATTAATGATATATATTT 17488 37 100.0 37 ..................................... TCTGTATGTAGAAAGCATCAGGGACGGAGAGGTGAGA 17562 37 100.0 38 ..................................... ATAAAGACTTTGACTCCATACATAATAAAAATAATCAC 17637 37 100.0 37 ..................................... AGAGTAACGAACTCATCAGAGGGTCACAGGTTCGAAT 17711 37 100.0 53 ..................................... ATTTGTCTTTGAGTTTCCTGCTTGCGGAAATCACAGATTCGCGAGCAAGATCN 17801 37 45.9 34 NNNNNNNNNNNNNNNNNNNN................. TTGGAAACGGGACTGTAACAAGTGGAGCTATTAA 17872 37 100.0 36 ..................................... CGATGGAATTTCTTGAAGAACTATATAGAGATAGCA 17945 37 100.0 37 ..................................... AAATACAATTTATCGCGCTCTTGATACATTCCATACT 18019 37 100.0 36 ..................................... TTATTTCTAATATTTCTTTTGTAGATTCAAAAGAGC 18092 37 100.0 36 ..................................... ATTTGTCTTTGAGTTTCCTGCTTGCGGAAATCACAG 18165 37 100.0 36 ..................................... TAATGCCGGGGTCGGTAGCTTGCCTTGCAAAATTGG 18238 37 100.0 34 ..................................... TTGGAAACGGGACTGTAACAAGTGGAGCTATTAA 18309 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================================== ================== 13 37 95.8 38 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CTGGAATCGTTATTTCTATTGAAGCACACATAGTTACAGATATAATATACACTAAAGCAAAAAGAAAATCCACTAAAATAAAAAAGAAACTAAAAAATATTCGCACCACCAAATCATAAATTTCTACATTTTATTTTCTACATTTTATTTTCTACATTTTATTTTCTACATTCTATTTTTTAGATTATATTTTTTAGTCAGTTTTTATAGAATGCCATGTCAGGCGGTTGTCGATGGGATATAATGTTTACTCTTTTACTCTTTTTTATTCTTATAGTAGGGCTTTGCGTTAGGTTGATCATTGATTGTTAACATGAGCCGATAATTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTCCAGATGTTTCCAAACCATCAAAAACCCTGATTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAATGGGCTCATTTCAAGCCTTTTCTGGCCAAACGCCGGAAATTTTTGCCCT # Right flank : C # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //