Array 1 9138-12946 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXIK01000002.1 Haloarcula sp. Atlit-7R P_contig000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9138 30 100.0 35 .............................. AAATCTCGCCGACAGCACCGCTCACATCCCGGCTG 9203 30 100.0 35 .............................. CCGCTCCGGGCGGCCCGAGTACCAAACCGATACTC 9268 30 100.0 36 .............................. CGGCCACAGCGCCTATGAATCCCTCCCTGCAACATA 9334 30 100.0 35 .............................. CACCCGTTGACCTCGCGGTAGATGTGCGCCAGCAT 9399 30 100.0 35 .............................. GACCTCGGCGGCATCGGCGAGTCCTTCGAGGCCGA 9464 30 100.0 36 .............................. TCTGACAGCCAGTCTCCCCCAGGAGGTATCATACGC 9530 30 100.0 34 .............................. ATGGCAGCGGCGGGCAAGCTAATTGGTCAGACAC 9594 30 100.0 35 .............................. TTTGAAAAATGCAAACTCGACGAGGACTGGCACAG 9659 30 100.0 32 .............................. CGACCCAGATCCAAGAGATGATCGACGAACCC 9721 30 100.0 36 .............................. GCCGAGCTGGCAGCCGAGTACCGCGACGAGCTCCTC 9787 30 100.0 35 .............................. GCAGACCTCAACGACACGCCGTTGATCATCAACCA 9852 30 100.0 34 .............................. TTTGCCCAGCCGTTCGACAACGCGGGCGATGCGA 9916 30 100.0 36 .............................. TGCTGACTCCGGAGTGAGTGTGCACGCCCAGCCATC 9982 30 100.0 32 .............................. GCGACCCGAAAAGAACCTTCTGGTTGCTCAGT 10044 30 100.0 35 .............................. GCGCATCAAACGAACCCGCTGACGGCGTCCCCGGC 10109 30 100.0 36 .............................. TATCGCTTGTCTTACCCGTCTACAAACCCTCAATCG 10175 30 100.0 36 .............................. AGGCAGGATGGTGTGACACCACCGGGCCGACTCAGT 10241 30 100.0 34 .............................. CTGCTGGCAGCGGACCAGCAGCGCCTCGAACTCC 10305 30 100.0 36 .............................. CTCGTGGTCGCGCTTGGTCGTCGGCGAGACGGGCAA 10371 30 100.0 34 .............................. ATGACCTCTCGGAACGGGTTGTCCTCGGAGATTT 10435 30 100.0 34 .............................. CTGCTGGCAGCGGACCAGCAGCGCCTCGAACTCC 10499 30 100.0 35 .............................. CTCGTGTCGCGCTTGGTCGTCGGCGAGACGGGCAA 10564 30 100.0 34 .............................. ATGACCTCTCGGAACGGGTTGTCCTCGGAGATTT 10628 30 100.0 36 .............................. GGTGATATAGCCACTTAGCCACCCGTCTACCGTAGA 10694 30 100.0 35 .............................. CTTACTGTGATGGACTTCGTTGGAGGTCGTGCCGC 10759 30 100.0 33 .............................. TACTGACAATGACGAACAGTCCGTTGAAACACT 10822 30 100.0 37 .............................. TCCCATTCATCGATAACCGTTCTATGCAGTGCAACAA 10889 30 100.0 33 .............................. GAGATGAGTTAGACGAACAGTTAGACGTAACTG 10952 30 100.0 36 .............................. ATTGACACTGCCACTCCGTGGACGACTGTAGAGCAA 11018 30 100.0 33 .............................. TTTCATTGTGAGTGCATTGCACAAACTGAATGT 11081 30 100.0 36 .............................. CAGCGGGCTCTCCGGGAACTCGCAGTCGGGATACGG 11147 30 100.0 33 .............................. CGGTTCGGGGGCCTCATCGAGATCATCCCAATC 11210 30 100.0 36 .............................. ACCATGTCAGCCACAGGATACACGACCGGCGGACCG 11276 30 100.0 36 .............................. TTGCAGGACCTCCGCGCCGTGGTTCCGAAACCGTCC 11342 30 100.0 37 .............................. GCGGACCTCGGCGTCGGGCGTCATGCCGAACACCCCA 11409 30 100.0 36 .............................. TCAGAGAGGTGCTGTGCCAGCTCCCCGGTGAGGACC 11475 30 100.0 33 .............................. CTCCTCGACGCGGTCAGCGGCTGTCCCGTGATG 11538 30 100.0 35 .............................. AGTATGCAATTGCGGATTCGGACGCCGGCCACACG 11603 30 100.0 36 .............................. AGGATACGGGCCGACTGGAAGCCCGAGTCCAGCCGG 11669 30 100.0 35 .............................. CTCGTAGACAGCAGAGGTTATCTGGCCCCCGGGAA 11734 30 100.0 35 .............................. CAGCTCGTCGATGACCGACAGGTCAGATAGGTCGA 11799 30 100.0 35 .............................. CTCATAGCTCAGTTCATCCTCCGAGGCGGTGCTCA 11864 30 100.0 34 .............................. GAGCAGGACGGAGAGGCCCCATACGGGAGGACGG 11928 30 100.0 35 .............................. GTTTACGCCCGCGGTATGACCGCTGAACGACCACT 11993 30 100.0 37 .............................. ATTTACGTCTTTTTTCTGTTCGCTATCGGTTAATATA 12060 30 100.0 38 .............................. GTCGACGGGCAGGCAGTCGGCCCCGGCGACCTCCCCAT 12128 30 100.0 35 .............................. ATACCGTGACCCACGTCCCGCCAGGTGTGACGCCG 12193 30 100.0 37 .............................. CAACATCTGGGGTTTCGACGCGATGTTCGCGTATCAC 12260 30 100.0 37 .............................. ACCACCCCCGAAGTCATCGCCATCCACATGGTTGATG 12327 30 100.0 34 .............................. GGCAACGAGTCGTTCACCTTCCTGCAGCAGTCCG 12391 30 100.0 38 .............................. CATCATGAGTTCACGAGACCGCCGGGTACAGGTCGCCC 12459 30 100.0 36 .............................. TTACATACGTGAGTTTGTGTAATGGGTGGTCAGTGT 12525 30 100.0 34 .............................. CTCTGTGGTGTCACGTTCACTCATAGTCTTATCT 12589 30 100.0 37 .............................. GCCCGTTCTGCGTCCTGTGGCTCAACGGTATCAGATA 12656 30 100.0 34 .............................. TGACAGAGTCTACGACCGCCTGGCTGAGCACAAG 12720 30 100.0 35 .............................. AGACATGGTCTAGCCCTCTGCAATTGTACGTTATA 12785 30 100.0 35 .............................. GAACCGACGGCGGTTCTATGACGCGTGAAGAACGC 12850 30 100.0 37 .............................. TCGGCACACACAGTCTTACTCCGCGCTGGTCGATAGA 12917 30 70.0 0 .......C.....TT.T.AAA..C....A. | ========== ====== ====== ====== ============================== ====================================== ================== 59 30 99.5 35 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : TGAACGTACTGTTGAACACCCGACGCTCAACCGAAAAGTTAGTTATCAGTACCTGATGCGTCTCGAAGCATACAAACTGAAAAAGCATCTCCTCGCCGGAGAAGCATACGACTCGTTCCAACGGTGGTGGTAAAATGTACGTGGTGATGGTATACGATTTGGAAGCGGATCGAACACAGAAAGCGCTCAAAATTGGTCGGCGATATCTGACTCACGTACAGAACTCAGTTCTTGAAGGCGAAATCTCTGAGGGAGATCTCTCCAAGCTCAAAAACGAGATTGATGATTTGCTGAAACCAGGTGAATCGACAATCATCTACGAGCTGTCTTCTGATACACTGCTCAACCGGACAGTCTACGGCGACGATCCAACTGAGGATCAGCGGTTTCTATAGTCGGTTTCCGTCGACCCCCCGGGGGGAAGCACCCTATTGATGGTCGACGGAAGGTCTTTACTGTGACCCGCCGTTAGCAGCCTTATGGCCCGTATATCGGGCATG # Right flank : CTACGTCAGTGCTCCTGCCGTCCAAAGGTAGTGCTTCTTACTCTCCAACAAAAACCCACCTAAGTTATTACCTATTCATTGCCACAAAAAGTATGATTTGTCTCTGTGCGCACCTCCGCTGCTTCTTTCATAGTCGGATGATCTGCCCTCAATATTGCTGTTGAGACACTGAAAACCGTGCTTCCGCTCCGTACACAGATGATCAGGACTCGTCATCAAAATCGAGGTCTCTCACATCAATGTCACCATTGAGATATTGCTTTCCCTGTTCCGTAATGTCATAGACACCGTTCCCAAGATGGACAACCAAACCAGAAGAAACGAGCGTCTTACAGCGTTGATTGATATGCTGACGAGAAAACCGGACTCGGTCACTATCAGCCATTTCTTTGGGCGTGTCAGGACCTCTTTCCGCCAAATGCTCTAGAATCCGGTCATCGGCCCGTGACATCCAGTCATCATCAAACCGCATAGTCGTTGATGGGTTCACTTAGATAATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 9554-13061 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXIK01000018.1 Haloarcula sp. Atlit-7R P_contig000018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 9554 30 100.0 34 .............................. AGGTATCGACCCTTGGGAGAACACGGAGTTTAGC 9618 30 100.0 35 .............................. GCCTCCTGGGTCAGGAGGACTGTCAGAGCGGATAC 9683 30 100.0 36 .............................. CCGCTGACTGCCTGCCGTTCGGAGCACTCCATCAAT 9749 30 100.0 35 .............................. CGCGGCATCCCGCTGCTTGGCGCTGGGAGCCACGC 9814 30 100.0 34 .............................. GATCACGGCCCGACGCGAGCCTATCTGCACTCGC 9878 30 100.0 36 .............................. CGGATGAGCGACGGCAAGGCGTTGACCGCTTCGCCG 9944 30 100.0 36 .............................. CCGCCCTCGCCGCTCGACTCCAGGAGGCTGGCTACC 10010 30 100.0 36 .............................. ATGTTGATATCTGTCGTGTAGACGCCGAGGACGTCC 10076 30 100.0 36 .............................. GAAGCAGATCACGCCGACGTCTACATCGAAGATCCT 10142 30 100.0 35 .............................. TCCGTCACGCTCGCACAGGCGATCAACGATATCGA 10207 30 100.0 31 .............................. GGTAGGGCTCGATGGCGGCGAATGAATCCCA 10268 30 100.0 36 .............................. CTTCGAGGTTCAGCGAGTCCGACCCGCCAGCCGATA 10334 30 100.0 36 .............................. TCACCCACCCAGCAAGTGCGGCAACGGCAACGGCGA 10400 30 100.0 35 .............................. ATGGGGTCTGTCCTCCGGCATATCTAACACTTCTT 10465 30 100.0 33 .............................. GCGCATCAAACGAACCCGCTGACGGCGTCCCCG 10528 30 100.0 35 .............................. ATCGAGGACGTGCTGGACCGCCACGGCGACTGGTG 10593 30 100.0 40 .............................. GCTGGCGACGAGTCGCTGGTCGACGCGCTGGGCATCAACA 10663 30 100.0 34 .............................. TGGCCGTCCGGCGGGTCGCCGTCTTCGTAGTCGT 10727 30 100.0 37 .............................. CGTCCAAACGCTGCTTGTATCGCACCTCTGTCCACGG 10794 30 100.0 35 .............................. GCGTTCACGGCAGCCCGTGTCTACTTCGAGTCACA 10859 30 100.0 37 .............................. TGCTTGAGAGCCGGGTCTATCCCTTCCTGTAGTTGCG 10926 30 100.0 35 .............................. CCCCGCCCTACCTCGCAAGCCCGTCAGTCACGCGC 10991 30 100.0 39 .............................. CAGTTGCTTGGTCCGCTCAACTAGATCGTACTGCAACGC 11060 30 100.0 36 .............................. CACTACAGCGTCAATCTTGTACTTACTCGACTCCTG 11126 30 100.0 36 .............................. TCCCCGATGGGGAGGTCCTCCCGTGGCCGACCGCAA 11192 30 100.0 37 .............................. GTCGTCTACGTCCGGGAAGCTACGTCGTCGGACACGG 11259 30 100.0 36 .............................. AGGGACGAGGGGAGAACTACAGGGCATACCGAATCA 11325 30 100.0 34 .............................. GTCTCAGGCGATAGTGCTGCCTCAAAGACAGCCT 11389 30 100.0 36 .............................. GAGCTGGTCCGCAGCGACACGCCGGTCGACGTCGAC 11455 30 100.0 35 .............................. CAGAGAGCAGTGCGTCCTCGACGATCTCGACGACC 11520 30 100.0 36 .............................. AGCTGCAGCGGCGATGTGCTCGGAAGGTCAGGCAGT 11586 30 100.0 35 .............................. TTTCAGAATCTCGATGTCCTCGGTCAACTCCTCGT 11651 30 100.0 36 .............................. CTTCGAGACGAGCAGCTGCGTCGATGCTTCGTTTCA 11717 30 100.0 35 .............................. TCCGTAGAAGTCGTCTGTCAGCCGCCCGTAGACGA 11782 30 100.0 37 .............................. CAGCTCTGCCGGACGCTGGCCGAGGAGTTCGACACGC 11849 30 100.0 36 .............................. GGAAATTCGGGGGCGCACTCATTTACATCGCACACG 11915 30 100.0 37 .............................. GGCATGTCGGCGGTGATGACTGATGGCGGGTGAAGCG 11982 30 100.0 36 .............................. GACGGCCAGACGCCGGACAACGTCGATCACATCCAG 12048 30 100.0 36 .............................. GTCACACAAGCCGCACTGCGACGGCCCGGAGTAGAG 12114 30 100.0 36 .............................. CTGGTGTCCGCGCTCGCCGTGGGCTGTGGGCCGGGC 12180 30 100.0 36 .............................. CAATATCGGCGGCCTCTATCATCTCCTCCAGTTTCT 12246 30 100.0 35 .............................. GGGGTGATCGGATGGGGGGCAGTCCCGAACTCAAC 12311 30 100.0 38 .............................. TACGTGCTGTGGGATGGGACCCACTCGCGCCGTCGGTT 12379 30 100.0 37 .............................. CGCGACTCGCCCGGTGGCTGTTGGAGTTGGCCGTCGG 12446 30 100.0 35 .............................. GAGCATCAGGACGTCGCGCCCTACGCCCACCTCGT 12511 30 100.0 33 .............................. CGGCCGATTCAGTATCTTATCTTCGAGTACGTC 12574 30 100.0 35 .............................. TTGCACCCCTCGCTTGCGACAACGGTGTTGGTATA 12639 30 100.0 35 .............................. GACAAGATCGTCGAGCTGGCATCAGACTCACCTCG 12704 30 100.0 34 .............................. CGAGCTCGGGATCGCTCCAAGAGCGACGCCGAGT 12768 30 100.0 37 .............................. GCACAGATCCACAGCGGCCCGTCGGATGTCTCAGACA 12835 30 96.7 36 ...................A.......... GCACGACTCGTCGACCGTCCGATCTGTGCTGTTTTG 12901 30 100.0 35 .............................. CCGTCGTGGCCGATAACGATGAGAGAGCCGCCGTA 12966 29 90.0 37 ..........-.....T....A........ TCGGCACACACAGCCTTACTCCGCGCTGGTCAGTGGA 13032 30 80.0 0 .............TT.T.C.A.......A. | ========== ====== ====== ====== ============================== ======================================== ================== 54 30 99.4 36 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : CGAACGCACTGTTGAACATCCGACTCTCAACCGAAAAGTTAGTTATCAGTACCTGATGCGTCTCGAAGCATACAAACTGAAAAAGCATCTCCTCACCGGAGAAGCATATGACTCGTTCCAACGGTGGTGGTAAAATGTATGTGGTGATGGTCTACGATTTGGAAGCTGATCGAACACAGAAAGCGCTCAAAATTGGTCGGCGGTATCTGACTCACGTACAGAACTCAGTTCTTGAAGGCGAAATCTCCGAGGGAGACCTTTCTAACCTCAAGAATGAGATTGATGATTTGCTGAAACCAGGTGAATCGACAATTATCTACGAGCTGTCTTCTGATACACTGCTCAACCGGACAGTCTACGGCGACGATCCAACTGAGGATCAGCGGTTTCTATAGTCGGTTTCCGTCGACCCCCCGGGGGGAAGCACCCTATTGATGGTCGACGGAAGGTCTTTACTGTGACCCGCCGTTAGCAGCCTTATGGCCCGTATATCGGGCATG # Right flank : CTACGTCAGTAATCCTGCCGTCCAAAGCTAGTGCTTTGTACAGACCCGCGAGAAGGCGGATCAGTTATTTACTCAGAAGCCACCGTACAAAGGGTTCCTGACCAACACTGATGCCCGTGTGTCAGCAACAGACTGTGACTCATGACGACAGCACCGACCCTAGGAGTTTGGTGGAAGCACGATAGGGGAGTACGGAGAATGGAACGCAGGTGGAGGGGAAACGGGGTACGTTGGAGGGCAGCGGGTCGGGCACTTAGCGCTCGCCAACACTGGGGGTCAGTTGGGGAGTGATGGGGCAAGCGTGTCGGATACTTTTCGGGGACCGCCTCCGACCGGCGGCTACCTACACATACTGGCCAGTGGATAATCAAGCCCCACAGAGTGTTTCTGACTCTGAAACACTCCTTCTGGGTCGGCTCTTACCAAGCACAGCGAAACAGCCGTATTGACCGTGAGCCAGTCCAAAATTTTGTGTTCCTCTGTCGGGTGAGAGGATGACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //