Array 1 1731-3609 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035120.1 Halorussus sp. RC-68 plasmid unnamed1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1731 30 100.0 36 .............................. TCCGAGTCCTATCCACTACCCACACTCCGGAACCGC 1797 30 100.0 36 .............................. CAGATAGGGGCGTGCGTCCCAAATCGGGAGAACTCG 1863 30 100.0 33 .............................. CTCCATCACCCGTTTAAGCTCAGGCAGGAACGC 1926 30 100.0 35 .............................. AGTATTTCGACCCTGAGAGTCCGTCAGACGGCCGC 1991 30 100.0 36 .............................. CACCAACCCGCGGTCGTTTCGTAGCCAGCGCGGTCG 2057 30 100.0 37 .............................. CTCAAGCGCCCCGCCACCGCCGTCACCAGCCGAGATG 2124 30 100.0 37 .............................. GCCGAATCCGGGTACAAAGCGATGGTTCTGAAGGGTA 2191 30 100.0 35 .............................. GTTCTCTCGACGGACGCCTATCACACGATGGGGAA 2256 30 100.0 35 .............................. CCCACATCACAGTAGCAACGTAAAGTTGTTACGCT 2321 30 96.7 36 ............................T. TCTCCTAACCAGTTACCCGTTTAACGTTTTAAGTGC 2387 30 100.0 36 .............................. CTCTGCCGACGAGACCCCAACCCCGAGCGCGCCCGT 2453 30 100.0 36 .............................. GTCCGACTCGCCGAGTCCTCAAACCTATCCCATTGC 2519 30 100.0 36 .............................. GACCGCCCTCCGGAGGCGCGCGAAGGTCGTCGCGCC 2585 30 100.0 36 .............................. GCACTCGTCGAGCGGGGAGTCGGCCAAAAGGTCCCT 2651 30 100.0 36 .............................. TGATTTAGGACGCGCATATCCTCGAATCGGTCAGGA 2717 30 96.7 35 ...................A.......... CTGAGTCGTGCGACGGGCCAGCAAGCGCGTCGCAA 2782 30 96.7 36 ...................A.......... ATCATCGACGAGTTTGGCCTCTCCGACCGGAAGGCA 2848 30 96.7 36 ...................A.......... GTTTGGTGGCCTTTCAGCGCGGACTCGCGGAGGAAC 2914 30 96.7 35 ...................A.......... CGGATGGTCCTGCGGGTCGGGCACGGCCACGTCTT 2979 30 96.7 36 ...................A.......... ACCGACTTGGTGATTCAGACGCTCAACGGCAACAGC 3045 30 96.7 37 ...................A.......... CTCTGGTCCGACCTTCTCGACCACGCCGACGAGAGTT 3112 30 96.7 35 ...................A.......... GGGCGCGGTGACAACCGGACTGTCGTGTCGGAGCA 3177 30 96.7 36 ...................A.......... CCGCGGACCTGAAACCCTCCGTAGCCCGTGCTGTGG 3243 30 96.7 39 ...................A.......... ACGGAGGTGTCCGACTGATGAGTGAGACTACAGACGACG 3312 30 100.0 37 .............................. AACGGACAGTTTAAGACGACTGTCCTCCCGAACCAAT 3379 30 100.0 36 .............................. GCGCCGGTCGTCACGCGCCTCACGTCGTACCACGAC 3445 30 100.0 39 .............................. GTGACCTACGACGGCGAGACGGGCGCGCGCGCGTCGAGA 3514 30 100.0 36 .............................. GTACCGTCGTCGGATGTGTACATCGTCTCGTCACCT 3580 30 83.3 0 ..............TG....C.G.....A. | ========== ====== ====== ====== ============================== ======================================= ================== 29 30 98.3 36 GTTTCAGCAGAACCCTTGTGGGTTTGAAGC # Left flank : CGACGAGACGGTCCGACTCGTGCTAACGGTCGGCGACGACGCCGACCTCTCCTCAGTCGCCGAGTCGGTTGAATCGCTCGACGGCGAGGTCATCCGAGAACTCCAGTTCGAGCGCCTGCTGGTCGAAGTCGCTCAGACCGACCTCGATGAGGTCTGTTCGCTCGACGGCGTTTCGTCCATCGAGACTGACGCGGTTCTCGGGCCGACCTGAGTCCCGCGGGAATGCCGACTTCTCGTCGCGTGCGGATATCAATTGTAAGAGCCGCGTCCCGAAGCGGTGACCTCCGACCGCCCACGTTTGTAGCGCGTACCCGAACAAATGGATCGGACGGTCCTACTGATTTGGCTGTTGGAAGCCTCGATATTTTGTGATCGGGTATGGCCGTCGAGTGTGCCGTTTCGTCATCGACCCCAGGGGCTTAGGGGGTTATCGAGGGTCGATGAAAATGTTGATGTGTCAGGCGGAGGTTCACCCTGGTGAGGCCCGTGAATCGGGCATG # Right flank : CGTAGTTACGAGCGATAAATGAGGCAAATATAGCCCGACCCGACTTGTCGCCGTGATCGGTCGCTTCAGTCGCTGTCGCGGTTGGATCGACCTGAACCTCGTCGGGCGCGGGTGGACACCGCCTTAACCGCCGAAACCGACATTCCGGCTCCAAGCACTCACCTGCCGGTATCGTGTCACCGACCACCACGATCATTCTCAGAGGCGAAACGCTAACAACCACTGAGTGTCTGTCGTGTGTACGATGCTCAGGCCGCAGGGGGAACAAAGCCGAGCGATGGGGACGGCACTGCAGGTGGTGTACGTCGGCGAGGAAACGCGCGGCGACGCAGTCGCCGCGGCGCTGCCGGACGCCGAGGTGACGAGCGAGCGCGATGGCGCGGGCGCGCTCGACCGCCTCGAAAGAGACGAGGTAGACTGCGTCGTTGTCGAGAACGAATCCGTGGGCGGAAACGGCGGTGAACTGCTCGCCACGGTTGGACGGCGCGCTCCCGCCGTCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGCAGAACCCTTGTGGGTTTGAAGC # Alternate repeat : GTTTCAGCAGAACCCTTGTAGGTTTGAAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1342-504 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035122.1 Halorussus sp. RC-68 plasmid unnamed3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1341 37 100.0 37 ..................................... GTCCTCGCGGCGTTGCTCGCCGCGCTCGCGGATGTCC 1267 37 100.0 34 ..................................... TCGATGCGCTCGCGGTCGCGCGGCTCGTAGTAGT 1196 37 100.0 35 ..................................... GGCCGGTCTGGGTGCGCGAGAGTGCCGCGTCGCTC 1124 37 100.0 35 ..................................... CTTTATCGACTTGATAGCTCCCGACCACGCTTTCC 1052 37 100.0 36 ..................................... TGGTTGTCGGCGGGGCTACGCTGGCCGGACTCGGCG 979 37 100.0 36 ..................................... ATACCATGGTGACCGAGATCGGCGTCCCGAAGGAAA 906 37 100.0 37 ..................................... CGGTACCCCGAGTTTGGGACGCCGCCGTCAGCATCCG 832 37 100.0 36 ..................................... CAGGCCTCACAGACGTGGCCGGTAGCCGATTGCATG 759 37 100.0 35 ..................................... ACCCACGACCACGCCGTGAACGACAGCCCGGACGT 687 37 100.0 37 ..................................... CGAACCGCTCAAACAGCATTGTCCCCACGCTCCCTGC 613 37 100.0 36 ..................................... GGTTCAGACGGTGCTATTCGGACAGGCAGACTCAGC 540 37 83.8 0 ....C......T......C....A....G...A.... | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 98.6 36 GTCGAAGGACCCAGAAAAGCCACTACGGCATTGAAAC # Left flank : CTCCTCCGAAAAGCCATCACGGGCGAACTGGACGAGTACCACCCACTGGAGATGACGCGCTAACCATGCGACAGCAGAGACACCACTAATCATGCGACTGCTCGTTGCCTACGACGTAAGCGAGGACGCGAATCGACGCCGAGTGTACAAAACCCTCCAGCGATACGGCGCGTGGAAGCAGTTCAGCGTGTTCGAAGTCGAAGTGACCGACTCCCAGCGCGTCGAACTTGAGGACACGCTCGAATCCCACATCGAACCTGCCGATGGCGATCGAGTTCGCGTGTATCGACTCTGTGAGTCGTGTCTGGACGACGTGACCGACATCGGGAATACCGAGACTGACGACTCGCCGAACGTGATTTGACGCTGGCCGGAGGACGGTGGTCCCAGTCTTCATGGACCTTTTTAAAGTCTCTGTACGGCCCCAGTCCACGAACGATGGGGGCGCAGAGACGACAGTAGAAACACTTATTTGGCCTGTCGCCGGATTTTCACCCCCT # Right flank : TTGACGTCGTTGCGATAACTCATCTTTACGAGTCCCGATATAAATGATCTCGATTCGTCTATAACGCACTCCTGTGGACGAGTTGTCCGGCCACAGACGGTGTTGGCGGTACATCCACTGCTGGACCTTCCCTGATACTACCGCTGGATGCCGCTAGAATTGATGGACATACAAGTAGTGATACGTCGTCACCGCCACGAGGACCCATCTTCGGGGATGGCCTACACGTCGTAACGGATCCAGATCACCGTCGATTCCAGTAGTTTCCGTTAGAGGTGTATCCCTCTCGGGGTGTTCTCAGTTCCGACCACTCCGCTATCCGGCCACTATATTTGTTGCCGGACCGTCCGAGTCACCGAGCGACGGTTCGCCGGGTAGCTGGGCCTCCTCGGTCAACACCACAACGTTCTCCTTGTAGGTAAGCCCGTCTGCGGTGCGTTCTTTCTGTGTGGTGATGAGCCGATGCTTGCTCAGTTCACGCATGGCGTCGAGCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGGACCCAGAAAAGCCACTACGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA // Array 2 11915-13048 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035122.1 Halorussus sp. RC-68 plasmid unnamed3, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 11915 37 100.0 36 ..................................... ATGTCGGCGTACCTCGCGGGCACCATCCCGACGGTG 11988 37 100.0 36 ..................................... ATGTCGGCGTACCTCGCGGGCACCATCCCGACGGTG 12061 37 100.0 35 ..................................... ACCAGAACGACGCGCGAGTGGAACAGGAACAGAAT 12133 37 100.0 38 ..................................... AAGACCGAGGTCAAATCGTGCTGGCGTCGGGTCGGCGA 12208 37 100.0 37 ..................................... GAGTCGGAGTGCGGATTCTCGGCGTTCTGGTGGTCGC 12282 37 100.0 35 ..................................... TCCTGAACGTAGTCGAAGCCGGTTCGAAGGTCGGC 12354 37 100.0 33 ..................................... ACTCCGTCTGCGTTCGGGCACGCTCTTGGTAAT 12424 37 100.0 37 ..................................... AACGCGATGATCTGTTCGTCGAGGTCACCCTTCTCGA 12498 37 100.0 36 ..................................... AAGACGCCTTCCGCCTGTCCTGCAATTTTGAGGAAC 12571 37 100.0 37 ..................................... GTCGGGGTCGTTGCCCTTCTCGACAAACGGAACGACT 12645 37 100.0 39 ..................................... CCGTCCCCTTCGCCGTCGCCGTTTCCGGGGACCCAACCG 12721 37 100.0 37 ..................................... CTATCCTTGCCTCTGACGACGAAGTTTGAGTTTACCT 12795 37 100.0 34 ..................................... ACGAGCAATGCAACCGGAGTGTCGAAGTCGGAAC 12866 37 100.0 34 ..................................... ATTCAGGCCATGAGCCTCGGGATAATGGTGGACG 12937 37 100.0 38 ..................................... TGCCCGAGCACAGCTTTGAGGTTGAAGGGCGGGAAGTG 13012 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 100.0 36 GTCGCAGAACCCAGAAAAGCCACCACGGCATTGAAAC # Left flank : CGTGAACTTCGGTGGTGGAGCACGCGAGGTACTCCTGCCACTCGCCACCGCCACGCTCGCACACGTCGAGTGTGTGGAGTCGGTGCTAAACTTCGGTGACACCGACCATGCTGTCCACGAGTGGACACTCCCGGACCTGACTGCGAATCCACCGGCCAAGACTTTGGACACGTTGCAGTTACTCGCAACTGTCGAGGAGCCAGTTTCAATTTCCGAACTGGCAGAGCAGAGTGCCGTCGCAAAGAGTACGGTGGGGCGTCACATCTCCCAACTGGCCGAGGCTGGGGCCGTCAACACTGAGCAAACGGGGAAGACGAAGCAAGTCGAACTCACCCTGACTGGCGAGATGCTCCTCCGAACCCAGACCGAATCGCTCTAAGACGCAGGAGTCTTCATCGACCTTTTTAAACTCTCTGTACAGCCCCAGTCCACGAATCGAGGTCGGTGAGAGAGTCGATGAGAAACACTTATTGAGCTTGTAAAAGGAATTTCACCCCCCC # Right flank : CCCGACACGACTCTCCTCAAGGAGTTTCCCGAGCGCAAACTCGTCGTCGGTGGAGACGGCCGGTTCTTCGAGTTTGCTACCCACTATAGCGATGAGAACAGTCTACATTCCCGCTGATTCGGCTTCGTCGGCAGTCGTCCCTGTGATGATGATAAGGACTACTCGGTACGTGACCACCCCGTGTGAGAAATGAATTCAGCGATAGATTCTATCGTCGATAAAAAGCAAGAGAATCGAGACACCCCGTGTGCAAAATGAAATTTCGCACGTCGATACGGGACGCCACCGACGTGTCTTTCACGCACAGGGGGACACCCCGTGTGCGAAATGAAATCCCGAACGAGGTTCACTCGGCGTCAATCATGCCCTCCAAAGAAATCCTTGACCTGCGTGTTGACTATCGACCTGAGCAAGCCTTCGTCACGTTCGACATCTTCGAGTCTGATATCTGTCTCGAGAGTCTCAGCGACGACTTCGGGATCATCAATGAATGTGTATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGAACCCAGAAAAGCCACCACGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : NA // Array 1 95024-95860 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035119.1 Halorussus sp. RC-68 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 95024 30 100.0 35 .............................. CCTCGTAGCCGGGGAGCGGGCCGGTATTCGCTATG 95089 30 100.0 38 .............................. TCGCGGGCACACTCTCGGTCCTCCGGCACCTCGACCTG 95157 30 100.0 37 .............................. CGAAAGACGCTCTCGAAGAGGACGGGCACGTTGACCC 95224 30 100.0 37 .............................. ACGACCTCGGAAGCGACAGACCTGGCGGATGGCCCTT 95291 30 100.0 37 .............................. ATGCGCTACGCGGTCCGAGAGACCCTTCGGCGCGAGC 95358 30 100.0 38 .............................. TACGAGAAGATAGACGAGGAGATACGGGACACGGAGTG 95426 30 100.0 33 .............................. TGAGTATTGTAGTATGTAGGCCTATCCGACTAT 95489 30 100.0 35 .............................. TACAACCGATACTGCGAAGACGACATCGCAGAACT 95554 30 100.0 37 .............................. ACCGACGCGATAGAAGACTTGCGAGAGCTAGAGGACG 95621 30 100.0 36 .............................. ATTCGCCAGCAACGCAACACGTCCTACGGCGTCCAC 95687 30 100.0 36 .............................. TCTCGTCGCCCGAGCAACAAGCTGCGGACGCTCAAA 95753 30 100.0 48 .............................. TGCCCGAAAGCACTGGAACAACGGGGGTGTCAACCGCCAACCGGAGTT 95831 30 80.0 0 ...C...........CGA..C.......A. | ========== ====== ====== ====== ============================== ================================================ ================== 13 30 98.5 37 GTTTCAGCAGAACCCTTGTGGGTTTGAAGC # Left flank : ACGACGAAATCGCGGCGTTCCGTGGCCGGGTGTATCTCCCCGACGGGAAGTAATTTATTTGTCCTTTCCGACCTTACGACCGACCGCACACGGGTGTTAGCATGGACAGGAGAGCAGTTCTCGGTAAGTCCAAGGCGGAACTGGTCATGGCACGAATCGGAGAACTGATGGCGGCGTCCTACCTCCTATTGCTGTTGCCAATTCTTCCGTTCCTGCTGGCGTACGTCGCCATCCAGAAGGTACTGGCGCTGTTCACCGGGCAGTCGAACGAGCGCCAGCGGTTCGACCCTCGGTCGGGGACGCCGCCGTCGTAGTCGCCCGAACATCGTCGGTGTCCACGCGGCGAGCGGAACAGACGACGTATCGGACGCCGAGGACCCCGGCGGTCGATTTCCGTAGTTTTCGTCGACCCCCGTGGGGTTCGAGGCCTATTGCGGGTCGACGGAAATGTTGATGTGGGTTCGGCCGCCAGTGGGCGTATGGCCGGGAAATCCGGCATG # Right flank : CACGTCGCGGGACCACTCGCCCAGCATGGCGGAACGTTTCACAACACTCACTCGAACGCACCGAAAGCGACGCCTCACGCACGCTCGCGGAGGTCTTCCAGCACCGAGAGCGTGCCCTCGGAGTACGACTCCTCTAGCACCACGTCGGCGGCGCGTTGGGCCTTGGCGTCGGCGTTGGCGACCGCGTAGGACTCGCCAGCGACGCCGAACGTTGACACGTCGTTCTCCGAGTCGCCGACGGCGGCGAACTCCTCGGGAGTGCGGTCGAGGAGCGGCGCGAGCGACTTCAGGCCGAGTCCCTTCTCGATGCGGGGCGATTTGACGTGGTAGGCGAATCCGGTGTCTACGACCTCCAGTCCGTGTTCGGCCGCGAGTTCTTCGAGCGGGCCGAGCGGTTGGTCCCGAGCGACCGCGATTTCGGTCTCGCGCCAGCGGTTCGTGAGGTCGGTCTGACCCCACCCGATGTCGTGTCCCGCCGCGACGTACTCCTCGGCGACGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGCAGAACCCTTGTGGGTTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2826453-2825027 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035119.1 Halorussus sp. RC-68 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================== ================== 2826452 30 100.0 37 .............................. ACCGAACCCTTCACCGTAATAGGTGGCTAACAGGAAA 2826385 30 100.0 51 .............................. CAACGATGTTCGTCAGACTCATGGCGAGAAGGACGTTCGGACCGAGGTCGA 2826304 30 100.0 37 .............................. GCCACGACGGCGAACACGGTCAGAATCGTTAGCAGTT 2826237 30 100.0 38 .............................. GTCGGAATCGGGTGCGTCGCGTTGGTCCTGCACCCAAG 2826169 30 100.0 37 .............................. TGTTGCCAGTCGGGATGGGTGCGCTCGGTGATGTCCG 2826102 30 100.0 36 .............................. GCGTGGTTCGTGTCGGTGCTCGCGGTCGGTTTGGTT 2826036 30 100.0 35 .............................. GTCGTCCAACTCCTCAGAGAGAAAGGCATCAAGCG 2825971 30 100.0 36 .............................. ACAGACTGTCTTGCCGAACCAATCCGACTCGTTCTC 2825905 30 100.0 33 .............................. GTGGCCGACGACGGCGAGCGCGGCGTCTTCCGG 2825842 30 100.0 35 .............................. CCTCAGTTTCCACAAGGAGAAGCTCCGACTCGGCA 2825777 30 100.0 39 .............................. GCTCAATTTGCTGATGTCGAAGCTTGGTAGCGTGGTCTG 2825708 30 100.0 37 .............................. GGGTCACTGTCGAAGTCTACCGATATGCCTCCATCGT 2825641 30 100.0 33 .............................. AGCCCGGCGACGCGGTGGCGAGTGGCTTCGAAG 2825578 30 100.0 33 .............................. CCGGAAGCGACGCGCTTGAAGGCGGACTGGAGG 2825515 30 100.0 36 .............................. ACGCAGACAGACCTCTCCGAGTCACGACAGTGGGGT 2825449 30 100.0 36 .............................. ATCATTACTGTCGAACCCTCACTCTCGAACTGCCCG 2825383 30 100.0 36 .............................. CAAACGTCAGTCCCTCCCGAGAGTTCGCCGACAACG 2825317 30 100.0 36 .............................. AACAGCCAGCAGAAGCCGTACGTATGGGGTGAGACG 2825251 30 100.0 34 .............................. GGATAATTGTCGGTCTCCATGACGCCGGTCGCGT 2825187 30 100.0 36 .............................. CGAGCGAGCTGTGGTCTCAGATAGACAATTTCGTGA 2825121 30 96.7 35 ................C............. CTGAATGAGCAGAACCACGCGGTTGAACCCGCCTT 2825056 30 73.3 0 ........A.C..T..C...A....C.GA. | ========== ====== ====== ====== ============================== =================================================== ================== 22 30 98.6 37 GTTTCAGCCGAACCCTTGTGGGTTTGAAGC # Left flank : TCGCGCTTCGTCTGGAGATCGCGGGCGACGTGGCTGAGTAGTTCCTCGTTGGGGGACGCGACGAGCAGCGTTCGCTGGTCGCCTTCCGCCATATCTCTCGGTGGAAACGGGTTCGAGTAACAGAACTCCGAGGGGACGTTAGCGTCGTGGCGGTCCTCGAACTCAGTCCCTTCGAGGGCCTTCCAGAGCCGCCCGCGAAGCTTGTGGTGATACGCGTCGTCGTACACGGTGTCGGCGCGTGCCGACAGTCGAACTAAGAGCCGCATCCCGAAGCGGTCACCTCCGACCGCTCCACGTATTGTGTCGCATGTCCGAACGAATCGAACGCATGTTATTAATGGTTTGGGTATTGGAATTTTAGGGGTTTTGGGGCGGGCGTCCGGCCGTCGAGAGCGCCGTTTCGTCGTCGACCGCCGGGGGTACAGAGGGTATCGAGGGTCGACGGAAATGTTGATGTGGGTTCGGCCGCGAGTGGGCGTGTGGCCGGGAAATCCGGCATG # Right flank : GACGTGGTCTACGAGGTGACGCTGTTCGACGGACACCCTTTCTAAACAACATAATTTATACACAGAGGAGCTTATTTTCTCTTTATGGAGAAAGAAGATAACGTACAGTCCTGTGGAATCGGTATCCGGGGCGTAGCGATGGCGATTGACACCGTCATTTGGTTCGCGCTGTTTTTCGTCGCCACGTTCCTGATTGCCTCGGTTTCGGGAGACATAGTAACCAGTAGCACGGGCGCGGACGCGGACCTGACGGGAACACCGGCGCTGGTGGCGCTCATCCTCTGGCTCGGACTCTCGATAGGGTACCACACGATTCTGGAGTGGCGATACGGAAAGACCATCGGGAAGGGTCTCGTGAACATTCGGGCCGTGAAAGACGACGGCTCGTCGTTGACGTTGGGGTCGTCGTTGACCCGGAACGTTCTGCGACTGATCGATTTTCTGCCGCTGCTCTACGTGATCGGCATCGTCTTCATGATCTTTTCGAGCCGAGACCAGCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGCCGAACCCTTGTGGGTTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2836096-2837972 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035119.1 Halorussus sp. RC-68 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 2836096 30 100.0 37 .............................. CCGTGAGCGACGCCATCCTGTACGCGGCCGCCGCGGT 2836163 30 100.0 34 .............................. GCCTTAGCCCGACCGAGCGACCACGTGGACCCGA 2836227 30 100.0 35 .............................. TGGCTCGCACCCTCCGGGATTCGGAGCGTTTTGCC 2836292 30 100.0 35 .............................. CTACGAAGACACCCCCATTGACGACCCCCGGCCCC 2836357 30 100.0 37 .............................. CAGCGCGAGCAGGCCCGCGAGAAGCTTCGCCAGCAGG 2836424 30 100.0 34 .............................. TCGGTCTCGAAATCCATCGAAGAAGACGACACGT 2836488 30 100.0 37 .............................. ATTGAGCTACCGGCCCTAGTATAGAACGCATGGGACT 2836555 30 100.0 34 .............................. CGCGGCGACCGCGGAACTATCGAATTGGAGCCTC 2836619 30 100.0 36 .............................. ATGTGGTTCGAAAAGCGAAGCGCAAGAAAAGGTCGG 2836685 30 100.0 42 .............................. CCGGAGCGGGGGGCGGAGGCGGCGGAGGCGGCGGCTCCGGCG 2836757 30 100.0 34 .............................. CTGTTGCTCGCCGTCGGCGGTCTCGACGGTGGTT 2836821 30 100.0 35 .............................. CAGGTGACGACCTACGCCGGGGGCGACCGCTACGT 2836886 30 100.0 35 .............................. CAGGTGACGACCTACGCCGGGGGCGACCGCTACGT 2836951 30 100.0 37 .............................. GCTCCAGAGGAGTTTTCGAGGGTTGGGAAGCTTCCAG 2837018 30 100.0 38 .............................. CGCCGCAACCACTTCAGCAACGCTCCCGCCGTCTGCCG 2837086 30 100.0 40 .............................. CCTACCTCCCGACCCGAACCTTTAACTCCCCACATTGTGA 2837156 30 100.0 36 .............................. AAGTGGTGGTCCGCGTGGTCTCGCGGGTCGCACGCC 2837222 30 100.0 35 .............................. CCGTTCGTCTCTAACGTCCAATCGAGAGTTATCCG 2837287 30 100.0 37 .............................. TCGCGGCCGACGCGATTCACCTCGGATGGAGTCACCG 2837354 30 100.0 35 .............................. CCGATGGTCCCGGCGATGAAGACGAGACCTCGCTG 2837419 30 100.0 35 .............................. TAAGTAACTCAGAGTGTCACTTAACCCCGAGTTGA 2837484 30 100.0 38 .............................. GACCTCTCGGACAGCAAGGCCCGCACCGCTCGGAAGCT 2837552 30 100.0 36 .............................. AGGTACACGGCGTGTTGGCTTCGCTTACCTGCCATG 2837618 30 100.0 35 .............................. TTCATCGGGTCGGTGCCGCGCGTTCGGACCGAGCG 2837683 30 100.0 34 .............................. ATCGGGCAACCGTTCGACCAACTCGACTCAGCGA 2837747 30 100.0 35 .............................. ATCCAATCGCTGAATACGCGAATTGTCGGCGGTTT 2837812 30 100.0 35 .............................. GTTGAGTCCGACCCCGCGGCGGTCATCTCGACGAC 2837877 30 100.0 36 .............................. TGCTTGTGGTACCGCTTCGCGCCGAGGGGCGCGTCG 2837943 30 83.3 0 ..............G...C.C....A..C. | ========== ====== ====== ====== ============================== ========================================== ================== 29 30 99.4 36 GTTTCAGCAGAACCCTTGTGGGTTTGAAGC # Left flank : TCAGCTATCAGTACCTCCTGCGACTGGAAGCGTACAAGCTCAAAAAGCACCTGCTGACCGGTGAGAACTACGAACCCTTCGAGCGGTGGTGGTAGCGTGGTGTACGTAGTCGTCGTCTACGACGTGCAGGCCGACCGCACCCACCTCCTGCTCAACTTCCTCCGCCAGTACCTGACTCACGTACAGAACTCGGTCTTCGAGGGCGACGTGACCGAAGGCGACCTCGAAACCATCGAGAACCGGCTCGACTCGCTTCTCGAACCCGACGAATCGACCATCATCTACGAAGTCTCCTCGGAGAAACTACTCGACCGGTCGGTGTTCGGCGAGGACCCTACCGAAGACCGGCGCTTTCTGTAACTCTTCGTTAGGGGTTCGCTTCCGGAGTGTTCCGTGAACGCGTCATCGACCTCGGGGGGTACAGCGGGTATCGAGGGTTGACGAAAATGTTGATGTGTCGTCGGTGAGTAGACCGGGGTGAGGCCCGCGAATCGGGCATG # Right flank : CAGCCTATAACCTTGGGAAACGCGAAACGAAATCGACGGCATCAGACCTTGGCAGGTCGTCAGCCGAGTTCCGAGACCGGTGGGTTGGCAGTGTCGAGGTGCCGGAGCGTCCGGCGGGTTCCGTTTCCTCGACGCTCCAGCGAAATCGATGAGACGCCCAGAGCGCTTCCGAGCAGTCCGGACCGGTCCGTCGCGTCCGTGACCTGTCCGCGTTCGACGCGCCACTGCGGTTCGTCCAGCAGACAGTCGTAACAGACGACGACACCCTCGTACACTCGGTACTCCAAGTGCCCCCACCGGAGGTCTTTCTCCACGAGCGTGTGTGCGACTGTTACTATCACAACTACGCTCGCACCGACGACTGCCCACATCGTCCCGGCAACGACGAACCCGAGGAAGGCGGTGACGCCCGCCGCGGCGAAGCGCCGGGGGTTCAACATTCCGAGGAGTCCATCGACGACCGCGCTGAGCCACACCGCGCGGCGATTCGTGTGAAATAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGCAGAACCCTTGTGGGTTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.50,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //