Array 1 4056654-4059477 **** Predicted by CRISPRDetect 2.4 *** >NC_009434.1 Pseudomonas stutzeri A1501, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 4056654 32 100.0 36 ................................ AACCCCAGCGCCGGCGAGGTCAGCGAGACGCGCCAC 4056722 32 100.0 34 ................................ AACAGGGCCGGGCTTGCCCGCGCCAAGCTGGACG 4056788 32 100.0 35 ................................ AACGCTACGCCGGCGGATATCGCGGCGGTGGTCAA 4056855 32 100.0 38 ................................ ACATTCCAAAATTTGAGGTAGCGACATGGCCCGTAAGC 4056925 32 100.0 34 ................................ CACTTCTCCCAATAAAAAGGGGCGCGGTTTGACC 4056991 32 100.0 34 ................................ TGCTTTTGGAGGTGCCGCATGAACCCTCTCCAAC 4057057 32 100.0 34 ................................ ACCTGCTGCTCAACTCCTCCTCGCCCGTTCCGTT 4057123 32 100.0 34 ................................ CTGGCCGGTGACGGCGCCCTGGTAGATATCGACG 4057189 32 100.0 35 ................................ TGGCATACGGTGTCGCCGGAGATCGTGCCGATCAT 4057256 32 100.0 34 ................................ AAGAGCAAGTACGCCGACTTGGCTGAGATCCTGA 4057322 32 100.0 34 ................................ AATAGTAGCCTTGTTGTTGACGGCATCCTCCGTC 4057388 32 100.0 34 ................................ AAGGCAAGCCGCCAGATCCTGGACGACTCGTCTG 4057454 32 100.0 34 ................................ TTCTAGAGACTGTCGAAACCTACGAACTGGATGC 4057520 32 100.0 35 ................................ ACCTAACTCATGAAGCGCCGTATCGCGATGAAATG 4057587 32 100.0 34 ................................ ACCGAACTGGTGGCGGAGACGAAGTGTGAGACGG 4057653 32 100.0 34 ................................ TTAGTCTCTTCCTCAACCAGCCCCATTCCACCGA 4057719 32 100.0 37 ................................ TCCCATACGCCATGCGGCAACACCCCGCGCTGGCGCT 4057788 32 100.0 34 ................................ ATGGTGAAGTCGCGATGCAGTTTCGAGTGACACG 4057854 32 100.0 34 ................................ TGGCCGTCTCGCACAGCCTTTGCCAGCGCCTCGA 4057920 32 100.0 33 ................................ ATTTCGCCGGGGTCGCCCTTGAACTCGCTAGAC 4057985 32 100.0 34 ................................ AGGTCAGCCGCTTCGGTAATCCTGAACTCCGCCC 4058051 32 100.0 34 ................................ TTTGATGGTGTTCAGGGTTTTGCCGTTGCCTTGC 4058117 32 100.0 33 ................................ AGCGCGTACAGGCCGCAGACGGCCGCCCCGATC 4058182 32 100.0 35 ................................ ATCGACAACGGCACCATCCGCAGCACCGCGGCGCC 4058249 32 100.0 35 ................................ TGGATCGTCGACGCCGACGCGGTGCCGGCCGATCG 4058316 32 100.0 35 ................................ TGGGCAGTGGACAAGCCCATGCACCCGTCCCTGGT 4058383 32 100.0 37 ................................ ATCGCGGCGAGCATCGACCAGGACAGCCGGATCCGCT 4058452 32 100.0 35 ................................ CAGTAGGCCCTACCGTCCTTGATCCCTGCCACATA 4058519 32 100.0 35 ................................ GAGGCGTGGTGGGACAGGCAGCCTCACCGCGAGCA 4058586 32 100.0 35 ................................ CTGTGCCTCTGCATCTGCTTTCTCCGTTGCGGCCT 4058653 32 100.0 37 ................................ ATGGGATCACCGCTCGAAGGATGTGAGGCCCGACCAT 4058722 32 100.0 34 ................................ CTCGAGTCGGGCACGCTGCTGGCGGTCTACTCGG 4058788 32 100.0 35 ................................ AACGATAACCTGACTCGCATTGGTGAGGCCTCTAG 4058855 32 100.0 33 ................................ AGGATCGTATTCGCCAGGGCTCGCATGGCCTCC 4058920 32 100.0 33 ................................ CTCTTGCGGTTGATTAAAAATGCGCCCCACTGC 4058985 32 100.0 34 ................................ GTTCCGAGCAGAACGACATTGCCCGCGAAGCCAA 4059051 32 100.0 33 ................................ GATCTGTTCATCGCGCCAGGCGTCGCCGTGGTG 4059116 32 100.0 35 ................................ TAACCGCCCAGGGGTTGAAGCGCGCCGACGCGGAG 4059183 32 96.9 34 .................A.............. CCCGCACCTCGCCCTTTTCCAGGGTGGCGCGCAC 4059249 32 100.0 34 ................................ TTCGAGAGTGGGCACCGTCGCGCCTCCTATGTGA 4059315 32 100.0 34 ................................ GGGGTCCACGCGACGGTACGGCCGTTGGGATACA 4059381 32 96.9 33 .................A.............. CTTGTGGCTCTGTTGTTGGCGATCAGGGGGAGC 4059446 32 93.8 0 .........................A.A.... | ========== ====== ====== ====== ================================ ====================================== ================== 43 32 99.7 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : CACCGTTCTTATGGAAATAGTTGAAGCCGATGATGATCCTGGTCAGCTATGACGTGAGCACGCAGGAAACCGGTGGTGACAAGCGCCTACGTCGCCTTTCCAAAGCCTGCCGTGATTTCGGGCAGCGCGTGCAGTACTCGGTTTTTGAAATAGAGGTCGACGCCGCTCAGTGGACCGTCCTTAAACAGCGCCTGTGCGATTTGATCGACCCCGAACAAGACAGCCTGCGTTTTTACTACCTCGGCAGTAATTGGCAGGCTCGCGTCGAACATGTCGGTGCCAAGCCAGTGCTCGATTTGAATGGACCGCTGATTTTTTGACCCAATTGCGAACCCAAAGCGACCGATGAAACCCGAGAGGTTCGCATGCTACTAACCTATTGAAATCTTTATTTATTTTATTTCCCGGCCGCCGCCTGGACCCACAGATGTGCCTCGTCGACGCCGCTTCGCAAAATGCCCAGTTTTTCTTCACCTAGCACAACGGGTTATAAACCCGTG # Right flank : CACCTTAATGGCATTCCTGGCGCAAACCGGCCAGCATCGAGCTCCACGAAGACACCCACAACACCGCGGAGGGCGCCGGCGCCGCCGCACTGGCTGCCGCCATTCAGGAACGCGCGCTTAACACGGGGGAACGCATTGCCGTCGTGCTCAGCGGCGCCAACATCGATCGCCGTGTGCTGGCGGAGATACTGGCTGACCACGTGCGGTGTTCCGACTGACGTGTGCGATGCCTGCAAGGCAGAAGGCTGCCTGTTAAATCAGGAAACGAGTCCGTCGCCGCAGGCAATTCCCGTCTGGCCTGCGCAACGCCATACTCGCGCCCGCCCGGCTCAGCGTGCGCCTGCGAGGCGCCGGCCGGGGCATCGATCGACAGACAGGTAGGCATCATGCAGGTAGCACATCCGGAAACGAGCCGCAGTCGTCTCGGCCAGTTCATCGAACGGCCAGCGTTCCAGCGCGGCATTCTGCTGCTCATCGTGATCAACGCGGCGATTCTCGGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //