Array 1 3101-4047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAAJC010000013.1 Halococcus salsus strain ZJ1 scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================================== ================== 3101 30 93.3 36 ........C.......C............. AGATGGTCGTGGTCATGTGTTGGAAGGAGTGGTCAG 3167 30 93.3 35 ........C.........G........... GGCAACGAGGGGACGTTCGGTGATGCGCCCGCGGC 3232 30 90.0 95 ........C..G.................T GCACAGCAGTTCGCGGTGGACGTAGAGGATCTTGGTTGTTACAGACGGACCCCTAAGCAACGTCCGTATCAGCGACGAGGACTTTGATGAATACC 3357 30 86.7 36 ........C.....TC.A............ ACCCGACGCATATCCCGGTCTATCGAGTACGACCTG 3423 30 90.0 37 ........C......C..G........... AATCACGAACTCAATCCGCGAACGAACAACCAGCCTA 3490 30 100.0 35 .............................. TTGATGTTCCCCACGATGCGGACCGAGGGGTCGCC 3555 30 100.0 37 .............................. GGGATGTTGGAGATGCGGTCCGAGCCAATATTGTAGT 3622 30 100.0 35 .............................. GTGCAGTGGTTCTGGTTGTTGTCTCATGGTTTCGT 3687 30 100.0 36 .............................. TGATAGCACGCCGGGCATCCCACCTGGACGCACAGT 3753 30 83.3 37 .......GCA.......AG........... ATACCGTACGAGTGGACCATACTAAGTCTATACCAGA 3820 30 90.0 37 ........C........TG........... TTCTGCGCAAGGGCATCCGTCGCGGTTGCCATGTCAA 3887 30 93.3 36 ........C.......C............. ACGAAGGTTCGCGAGCGCGTGGTCGAGGAATACGAC 3953 30 90.0 35 ........C.....T...G........... CGACCAACGTTTGCCCACACGGCACGCGAACTCAC 4018 30 93.3 0 ........C......A.............. | ========== ====== ====== ====== ============================== =============================================================================================== ================== 14 30 93.1 41 GTTACAGATGGACCCTTGTAGGGTTGAAGC # Left flank : AAGACCTTGCAAGTGTACTTTCAGAAATCAGCGAGAGTGATGACATTCTTCTCCAGGCGTACAGTCGTGGTGATGGCCGGACGCTTCGTGAAGCTTCGCTGATCGAAGACTTGTTCGAAGTCGATGTTGTAATTTGCGCTACGGAGGGCGATTTCGCTCTCGTTGAAGACTACCGAGAGGCTGTTAAGGAAGAACAATGGGAGACAGCGACGCATTTGCGCCGCCAGCTTACACAGCTCTCTGTCGCCGTCACCGTCTATTCGTTTGACTCCGACCGATGGGAGACCCTTAGCGAGCTCAGTCAATTACTACCAGAGAGCGATGGAGATGAGCGCGTGGTCGCTCGCTCAAGCTTAATTGTCGACGAGCGTAACGGAATTCAATTCAACTGACTCGTGGTGAGTTGTCGACCCCTGGGGATTGAGAAGGTATTGAGGGTCGACGGATTGTAGGTGTCATGACCGGAGGGATTAAGCTGTGAGACCCGCCATGTGGCAATG # Right flank : CGACACTTGGCTCTTGCATTACCGGGACGGACACATTATAGACGAGCTGTCCGTCACAGGCAATCTCAGACAAGCGCCCCGCGCTCAGTCGGCCCTGGTATGAAGCTAAAGTTTTCTACCAGACTGGCGGAAAGTGGGGTAGCTATAAGTCAAATGCGGGGGTGGCAGAAAGTAGTGGACCCGGAAGTTGAGAATTTGATTACTGTAGCGGCACTGTGACCGGTTTTTCATTCGTGTTCACTCTGAAATTCGGGCTCCTAAGGCTCGTAGCCGACCTTCGCAGTGAAAATTCTCTATAGAGGTTACACAACCACGAGGTGGAGATAGCGCGACCGCTCACCAGATTGCTCGCACTGCGGGAGTTCTCAGCTATCCAATACCGGTCTTCTTCACTATCGTCAGGACGTCGTTTGCAGTCACAAGCGGAGCTGATGAGACATCATCAAACAGCGAGAGTTGAACAAGTAGGTCGACCAATCGCCAGATCGAGTACAGTAGGC # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.38, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGATGGACCCTTGTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //