Array 1 63420-63107 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIVT01000001.1 Zymomonas mobilis strain NRRL B-14022 Ga0314520_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63419 28 100.0 33 ............................ GAACAGAAGGATTTTTGCCCGGGACAAAATTTT 63358 28 100.0 32 ............................ TACCCCAGCTTTGCGCTTTAGCGTTGCGGTAA 63298 28 100.0 32 ............................ AGAAACTCCAAGAAGAGATCGCAACCGAGCGA 63238 28 100.0 32 ............................ GATTAAAAAGACACGATATGCGATGTGGCCTA 63178 27 89.3 17 .....................A.C-... TTATCAAAACCGATGCC Deletion [63135] 63134 28 67.9 0 .A...TAT..C..........C.TC..C | ========== ====== ====== ====== ============================ ================================= ================== 6 28 92.9 29 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCGAGCCGCCTAATCTACATCAGGAGAAATAGCCAATATATTTCTGGATATATTGGCTATTTTCTTCAAAAAGAAAAAACGCTATCAAAGACAACACTGCTTTTTGATATTGTAAAGAATACACCGCCTCAATTTTTGCCCCTAATTTGACCATCTTTTTTCGAGACATTTAAAAATCGTTTAAAATCAACAGCTTAAAAGCAAGCCTCTTTTTTAGGGTCATTTTGCTTATTTGGCATAATATCCCTTTATTTTAGGGAGATTTCTATAAATCTCTTCTA # Right flank : ATAAAAACATTTAAAAACAAATACTTAACCACCAACATATTACACCCTTTAAAAAATATTATACATTTTTTCAAAGATTTAGGTTGACGAAAGCCAAAAATCCGCGCATTTGCGCTTGAGGTGGCTCGATGGCGGAGTGGTTACGCAGAGGACTGCAAATCCTTGCACGCCGGTTCGATTCCGGCTCGGGCCTCCAGATTTCTTTTTATCGGCTGAAGGCAAACGGCCTCACCCCGCCGATATCTCCTAAATTTATCCTCCTAATAGATACATCCTGCCATAATGGGACAGCTGTCAGCTATCCCCTCAACACCACCGTTCTATTTCAAAACATTCTTTTCGCTTTTCTTTTCACTATCCCGATACCCCTCATATCCTCTCTTTTCATCGCTTCGATCGCCCTCTTTTGATATAGATGCGAAACCACTATATTACGTCTTCACAGGCTGGCGATATGGCCAAAACACAGTCCACAAGCCATCCGTCTGTTCACGACCTCC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 28752-28424 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIVT01000016.1 Zymomonas mobilis strain NRRL B-14022 Ga0314520_116, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28751 28 100.0 33 ............................ TGTTGAGCTGCGACGTTATGCTGAAAAATTGGC 28690 28 100.0 32 ............................ AATGCTCAAGCAAAGCCAGCAATGTCACAAGA 28630 28 100.0 32 ............................ ACCTTGCTTGTCAGTGACGATAATATTACCTT 28570 28 100.0 32 ............................ TACTCGGATCATGGTATCCGGCCCGACTGTCG 28510 28 100.0 32 ............................ TGATCGTCGCAGAGTTATTATCGAAGACACGC 28450 27 78.6 0 .............T...T..A..-.T.C | ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCCGAACAGGTGGCTATCGCCTAATCGCTCAAATATATTGAGATTTGAAAGAGGGAGTCCGTGAAAAGGCTCCCTTTTTTATTGATGATTATTGACGAGAAGTAAGTTTTAAGCGGCCAATTTTAGGCTTTTTTCTATTCTAGAAGTCGAGATAAAAAGGCCTATTCCTTTTGCAGAGGAGACAGTGAGAATGAGGTTTTTATTGGTCAATCGGAATAATTATGATCGGTAGAATATGGGGTAAATAAATAACCTAATTTCATTCTTGCCATAATTTCCGATCGTTTCCTTTTGTAAAAGCCAAAAGAAGCGTTAAGATCGCGATCTGTTTTTTGACATCGTGAAGTCTTTTTGACCCTTTATTTGACCCTCTTTTTTGGGCATGTAAAAAAATCCTTTAAAATCAATAGGTTAAAAATAGGCTCTATTTTTAGGGTTATTTGGCTATTTTTGCCCGATATTCCTTTCATTTAGGGGAGTTTTTAATTATTTACTCTA # Right flank : TTATTTAAGTGTTGTTTTGTTTCATGGTTGGGGAATGTTTTATCGAAGGCTATTCTGTTCTCAAAATATGTCGCTGTTACTTCTTTTTCTTCTCTGTTTTCTCTTTTTAGTTATTCCGACCAGAATAGGATTATTTGTGGTTTCAAAATAGCGGTTAAAAAGTAACGCTTGCTCCGTCATTTTGAGTTATTGGCGGAATCTGTTTTTCATTTCTTTTTATGGCTCTTATGAAAATAGAGAAATGTATTTTTCTTATTTTCTATTTTGTTAGAAAATTTTTTATTCATTTTATTGAAATGATATTTTAACCATAAGAAGCCTATGACCCATCGACCTCTTTCCGATCAAATTGCCCTTGTCACCGGTGCCAGTCGCGGGATTGGTGCGGCAACCGCCAAAGCGTTGGCTGAAGCGGGGGCGCATGTCATTCTGGTTGCGAGAACGGCAACCGATCTCGATAAAGTCGAAGAACAGATTTATCAAAAAGGCGGATCAGCGAC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 46437-46896 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIVT01000010.1 Zymomonas mobilis strain NRRL B-14022 Ga0314520_110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 46437 28 100.0 33 ............................ TAATTTGAAATTGTTAAAGAATCTAATAACGCT 46498 28 100.0 32 ............................ TCCCTGCCGCATCATATGACCGCTGCCCATAT 46558 28 100.0 33 ............................ AAACAACAGATCAGCCAGATCACCGCATATCAG 46619 28 100.0 32 ............................ AGCGTGCTTTTGTCGATGCTTTAATCGATTGG 46679 28 100.0 32 ............................ AGTAACCATATCCCATAAGCTAATAGACGATG 46739 28 100.0 32 ............................ GGATTGTGGGCATGGGGCAATCATCAGCATAC 46799 28 100.0 43 ............................ TGCTAGAGCAAATTCAGGCAATGTTGGCCGAAATGCGGATGAA 46870 27 82.1 0 ....................-..GCTT. | ========== ====== ====== ====== ============================ =========================================== ================== 8 28 97.8 34 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTGGATTAGACACCGCTGTATATTTTGAAGCATAGCCGAAATTGAGTTTAATTTTGGCCTGTTGCTGCATGGCTGCCTTTGTAAGCCGTTTTAACCGCGGATAATGCGCGATATCCTATTTTCTGACGTTGGCATCCTTATGGCCGAGTGAAGGTCTTGGAATGGATGCGTTTAGTTTTCAGCCCTAGCATAGCGAAGATAGACGGTAATAAGAGCCATTCAATGCTGCACATCGCCGAAAATTGGTCGAGAGAATAGCGGTGTGTATTAGCCTTGAGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAAGACTCTTGCGGGATCAGATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTCAATTCAATATGTTACATATGGGCGTATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGCAATTCTATCTTTTGCCTCTA # Right flank : AGAATTTATTGTATTGGGGTGGTTTTAAAGAGGGCATAAAGCCCTCTTTTTTTAAGATTTTTATTGAAAAAACGGTTTGTTTTTTATTGGGGATTAGTCTTCTGCAACGACGAGGTCGGTCTCTTTTTTACGGCGTTTTTCGCCAAAAAGCATAGCGAGCAAGGCCATTTCATAAAGCAGGATCAGAGGCACCCCAAGCAATAATTGTGAAACGATATCAGGCGGGGTTAAAACCGCAGCGATGGCCACAGAGGCGACGATCGCATAGCGACGGCCTGCAACCAATTGTTGGCGGGTAACAAAGCCTGCCCGTTCCAGCAGCAGCAGCACGAGGGGCAGAAGAAAAGCGACACCAAAGCCGAAGATGAATTTTGTCACAAAATTCAGGTAATTACCGACTGCGGGTAGCGCCATTTGCTGCACGCCGCCAATATTGCCTTGATAGCCGAGCAGAAAATGAAGGGCGATGGGCATGGCGACATAATAGGCCATAGAGGCAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //