Array 1 108713-108550 **** Predicted by CRISPRDetect 2.4 *** >NZ_NADR01000011.1 Geobacillus sp. 46C-IIa scaffold_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 108712 30 100.0 35 .............................. ACGGTGACAATGAGTGGGCGGCAAGCTCCAGTTTC 108647 30 100.0 38 .............................. TGTATTGGATTGGGATGAAAATGATCAACATGTCGAAG 108579 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 98.9 37 GTTTTTATCGTACCTATGAGGGATTGAAAT # Left flank : GAGACGATGGATGGGAGAAAGAAAACGCAATTTTTTGATCCTGATGATGAGGTATTCCCCCACTTGATTGAATTGAATTTCTGTCACAAATATGCAGCGTACTATGGTGTTCCGCCAGCGGAACGATTATCGATTCAACCGATCTATGTTCATCGGCGTCATCGTGTGGTCACACTATTCAAGGACATGTATATTACAGGCTGGATGGGACATTATCGCCTTTGTTCTTCGCCAGAACAGTTGACATTTTTGTACCACGTCGGTCTTGGCAGTCGAAATTCACAAGGGTTTGGAATGTTTCGCCTCGCAAGTGGATAAACCAGCCGCAAGATTGTCGTCGACCTCCAATCCTGCAAAAACCCCGGGGGATCGACGACAATAGTTTTTGGCGGCTCAGACTTACAGCCATCGAGGTTGAAGGTTATTGACAGAATTTTTGGAACTTGGTATACTGAAAACAGTGCTAGAGCGAAATGCTTGATACAACAAGCATTTTTGGG # Right flank : TTTGAAATAAAAGAATCATTCGAACCGGATGAGTAGGTACAGACTGTTGGGTTGCAGCCAAACCAAAAAAATGATGATGTCGATTCAACAAAGATATGGAAAAAATATTTGGGAATTTATCATCTCCCGCCGAGGAGACCCCCACTTCCACGCGTGAGCGTAGGTGGGAGAGCGTTCAATGTCCAAGCTTATGGTTCGTTTGGAGTTGTTTCCATCAGTTGGCTTTACATCATTCGGAAGTAAACGGAGGTTGCAATGCGCTCTAAACTTCGCGATCTCGGGTTTTCCATCGGCACGCTTCCAGTGGGGAAGCGGAATCAAATCACGGATGTGGCTGGGGTAAAGGTTGGGCATGCGACCATTCGGGAGGAACTGGATGAACGGACGGTGATCCGCACTGGGGTGACGGCGGTGTTGCCGCATGGGGGCAATTGGTTTTTGGAAAAGGTGCCCGCGGCTTGTTTTGTTTTGAACGGTTTTGGGAAAACGGTCGGGTTGGT # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 115272-117082 **** Predicted by CRISPRDetect 2.4 *** >NZ_NADR01000011.1 Geobacillus sp. 46C-IIa scaffold_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 115272 36 100.0 29 .................................... AATATGTCTTGTATGTGTTGCTCGGTAAG 115337 36 100.0 28 .................................... TACGGTACTGTTTGGAAACAAAGCTCGT 115401 36 100.0 29 .................................... CGGCCAAGCGGCGGTTATCAACCGTGATT 115466 36 100.0 29 .................................... TAAAGCGACCGGCGTACGTCATGATGTCA 115531 36 100.0 29 .................................... GTCGAACTCGGCGTGAACCCGGCTGTTTG 115596 36 100.0 29 .................................... GGTCGTTCCGTCCGTGCGAGTCGTCAACA 115661 36 100.0 29 .................................... ACTCCGTCCGCCCAAAAGGTGAGCGTTTA 115726 36 100.0 30 .................................... CCTTTCCGCGTGCTTCATGAAAACCTTGTA 115792 36 100.0 30 .................................... GTGGGTTCGGGTGTTACTGGTAATATATAT 115858 36 100.0 30 .................................... TCGTCGGAGGCGAATAGCAACCGAAACTAC 115924 36 100.0 30 .................................... CGTCCCTGTCGTACGATTTGCGTACACCGG 115990 36 100.0 30 .................................... ATTGATCTGCTCCTTTTGCTGTTCCTGATA 116056 36 100.0 30 .................................... TACGAAGGCGGATGTTATCTAGTCGAGGTG 116122 36 100.0 30 .................................... CTTATCGCCCCAAAAATCTTCTTCAGTAAT 116188 36 100.0 30 .................................... TATTCCCATGCAGTGGGCATCCGTGCCAGA 116254 36 100.0 30 .................................... AAAAAGACGAAGAAACCGACGAAAAAGATG 116320 36 100.0 30 .................................... CCACTCACCGTCATGAAACATTTTACCGAA 116386 36 100.0 30 .................................... GATGTTTTTGTAACGGTGAAACCAGAAACT 116452 36 100.0 30 .................................... CGATGCCGGCGTCGCGTAAGTACGTGGCCA 116518 36 100.0 30 .................................... CGATAATGTAAAGGTGTTCAACATTAAACG 116584 36 97.2 30 ..............................G..... GAAGGGGACATTGTGGACGATGACGAAGCA 116650 36 100.0 31 .................................... TTGAGCAATGATCTGATTGAACGGGAGCATT 116717 36 100.0 30 .................................... GCAGAAAGGCCAGTAATTTCACGAACCCGC 116783 36 100.0 30 .................................... CGTGCTTGTGCGCGATTGGCTTCGCGTACG 116849 36 97.2 30 ..............................G..... CCGCGTCTACTGTTACCGTGCCGCCGATAA 116915 36 100.0 30 .................................... TATCGAACGCTTCTTCTTCAGACAGCCACT 116981 36 100.0 30 .................................... CGTACATCCAGACTGTCATCCGCGCATATG 117047 36 97.2 0 ..............................G..... | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 99.7 30 ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Left flank : AAGCTTCGTCACTGCAAGCCGGAGCCAAGACCCTTCGTTGTTGAAATTGCCGGAACTTCTCCCGTTGCAACTGCACGTATATGAGTAAGTTTATGCGGTTGCTCGTCTTTTTTGATCTCCCCGTCGTGACCAACCGGGAGAAGCGTGAATACCGGCGATTTCGCACATTCCTACTGAACGAAGGGTATGATATGTTGCAGTTTTCAGTCTACAGCCGCGTCTGCCACGGACACGAAGCAACGGATAAACACTTGACAAGATTAAAACGCAACTTACCCCCTCAAGGATCGATTCGGGCGATGGTCGTAACGGAAAAGCAGTACGCAAAAATGCAGCTGCTTCTCGGGGAACCAACGGCACAAGAAAAGAAAATGACATCCACCCAGCTAACACTTTTTTAAAAAACGGAAAGGGTTCCCCCTTTTTGCATAAGCACATTTGCATTTTTTGAAAGCAAAAAAGCCTGCGATCCTTGAGATTGCAGGCTTTTTTGGATACGT # Right flank : CAAGAGCGGAGTTTATCGCCTCCATCCAGACATAAAAATCACGACTCACCAGTGTGATTTTCACGGAAAAAGCGGCTGAAATCGAACATCATGAAAAAAGGCGGTGGTTGACCGCCTTTTTGTTCTTTTCCTCTTACTCATTCAACGGGAAACACCGAGGTAAGATGGATATTCTGCCCCTTTTCTCTTACTCGCTCAGCAAGCGGCGAATTTCTTCTTCAGAAAGATCGACCAACCGGGCAATCTCGACGGCCGTCATCCCTTTTTGTGCCATCGTCTCAATGAGCCGCTTCATTCCTTGCTCAAGGCCGCGTTTCCATCCTTCTTCCATCCCTTCCTTCTTCCCTTTTTGCTCGTAGGAGATGATCAGCTCCAGCACTTTCTCTCTTTCTTTCGTTTCCATCGCCTTCACCTCGCTTTGCAGCTGTTGTTCCTCTTCCTCCGTCAACTTCACGTACGTCTCAAAAAACCCAAGCAGCAACCGCTGCCTCGCCTCATCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 41660-38909 **** Predicted by CRISPRDetect 2.4 *** >NZ_NADR01000013.1 Geobacillus sp. 46C-IIa scaffold_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 41659 29 100.0 36 ............................. GAAGCTTATGGAACAAAAACTAAATGGGATGAATTA 41594 29 100.0 36 ............................. TTTTCCAGCCAAGCCAGAGCCGCAGCGGGCGCACTT 41529 29 100.0 35 ............................. TCAGAGCAACTGGAAATGATAATGGAGCAAATCAA 41465 29 100.0 36 ............................. AGTGTTGAAAAGTGTTGAGGAAGAAATCAGCTTAGC 41400 29 100.0 36 ............................. TTTACAGCAAGTACATTTCTTGAGAAGGGGCTGACA 41335 29 100.0 35 ............................. ATGAATCGGGACGTATGGATTTAGTTGATTATTCG 41271 29 100.0 36 ............................. GGAAGAAAAAATCGCCCTCTATCAAGAGGAACTTCC 41206 29 100.0 37 ............................. CATTGCTATACATGGCTCGCCCGGACGAAACAAGAAT 41140 29 100.0 35 ............................. TCTAGGGCTTCTTTTGGAAGAAAAGTGGACAAACA 41076 29 100.0 34 ............................. CGAGCTTCTCACCATCCGGGGACGTCTCTTCCTT 41013 29 100.0 34 ............................. GGCATTGGATAAACGGGATGAGGAGTGGTTTCAT 40950 29 100.0 34 ............................. TCAAATGGTTTAACGAACAAGACTGGGAGAGATA 40887 29 100.0 36 ............................. CAAGGGATCGAGCGATATAGGCAAAAACGTGATAAG 40822 29 100.0 36 ............................. TTGGAAATGAGAATATGTGCTTCTTTTAATTATTAT 40757 29 100.0 36 ............................. AGCTCTGCTTTTATGATTTGATTGGCGTCGATCGTG 40692 29 100.0 36 ............................. TTTTCGTGATGTAAAATAGCCCCCGTCATACCCTTG 40627 29 100.0 35 ............................. CTCGTCCTATCCGTAAAAGTCTTTTCTGTCAACAA 40563 29 100.0 35 ............................. AAGAAGAGGAAAAGTTGGTTATTGACGGGGTTGTC 40499 29 100.0 37 ............................. GAAAGATTGTTCTGCAAAAAAGATGGAACTGTTTGGC 40433 29 100.0 36 ............................. TGCCGAACCGGAACCGATAAGGTATATACAGATTGC 40368 29 100.0 36 ............................. AGGATGGAGCTGTTGCTTGATATTGTTGAGATGATC 40303 29 100.0 35 ............................. TGTGAAAAATCGTGGATTGCTGACAGCATAGGAAA 40239 29 100.0 35 ............................. TTTTCGTGATGTAAAATAGCCCCCGTCACACACTT 40175 29 100.0 36 ............................. GTGTATGAAGAAGTTGACGGCGACTTTGAAATCATA 40110 29 100.0 38 ............................. TTAAACTTCTCTTTTTTGTCGCTGATAATCGTTCGGAA 40043 29 100.0 36 ............................. TGGGCATTACGACTATTAGGGGGGGCGTGCAGATTG 39978 29 100.0 36 ............................. AGCAAGCTTATGAGCGTTTTATGCGAGAGGAGGAGC 39913 29 100.0 38 ............................. ATGAAAATCGCAAACAAAAAAGAGAAACGATTGATTGA 39846 29 100.0 36 ............................. AATTATAAAAGAACTGCGGTTCAAGCAAACAAGTCT 39781 29 100.0 35 ............................. TGGCTTTGGCCGGAGCAAGAAGAACGGCACGTGTT 39717 29 100.0 36 ............................. ATTGATGAAAAAGAACGGAACACCGTTTTGGATACG 39652 29 100.0 35 ............................. CAATCTTCCGATACGTCTTTTCCCCAATCCCCTGC 39588 29 100.0 36 ............................. CTCTAATCCGTTCCCATTCCCTGCTATGATAGAACG 39523 29 100.0 36 ............................. GCTGTACGGGATAAATACAGGCATTTATTCCTTATC 39458 29 100.0 35 ............................. TCAATCTCCTCGCCTGTGACCGCGTCGATCACAAC 39394 29 100.0 36 ............................. TTCAAATACATTAATCATATGTTGATCAATATCCTC 39329 29 100.0 36 ............................. GGACATGGTTGGTGACGCATGCGGGAATGGTTAGGG 39264 29 100.0 35 ............................. CCTTTTCATCCGGTGTCAGCATCGTCAAAAACTCA 39200 29 100.0 35 ............................. TCCGTAAAAGTCTTTTCTGTCGACAACCTCGAAAG 39136 29 100.0 37 ............................. ACGAATTACCGGAAATCTTTAAATTTTGGAGCAATAA 39070 29 100.0 37 ............................. TAATTTAATCGTGTTTTCGGGATATAAGTTCATGAGG 39004 29 100.0 38 ............................. ATAATTAGGAGAAGTGTCAATCGTGTTCAATGGAAAGC 38937 29 93.1 0 .T..........................C | ========== ====== ====== ====== ============================= ====================================== ================== 43 29 99.8 36 GGTTTATCTGAACGTAGTGGGATTTAAAT # Left flank : GGATGAACTATATAAACCGTTGAAAGCGTGGTGGTGAAACATGTTTGTTATCATTACGTATGACGTAGCGGAAAAGCGGGTCAACAAAGTTTGCAAAAAATTAAAGGAATATCTGACTTGGACGCAAAATAGCGTATTTGAAGGGGAGATTTCGAAAAGCCTGCTGATGAAGTGCATGTATGAATTGGAGATGATCATTGATAAAGAAGAAGACTCCATTTACTTATACGAAGTAGGAAATCCGAAGAATATAAAAAAGCGGGTATTTGGTCAGGAAAAGAATTTTGATGAGTTATTTCTTTGAGTTTTAACAATTTGCAGTGAACCCCATTTCAGTGGATAAATGGGGAAATGCTTGATTTATCAAGGGAAGTGCCTCATTATTTGTATAACACGGAAAACACGATTACCGCTTTACTGCAAAATGAGGTATAATGGACTGTGTAGGTGATAGCGCAAATTGCCTACTACATCAATAATTTTATTTTGTGATCGACAGG # Right flank : AAAGGTTGTGTAAATGTATCGGTATTTAGGGTACCGTCAAGAATTTTGTGTAATGTAAGATAGATAGGGTATATCTGAAATGGATTTATATACATGCAACATGAAGAGTTAACTTCTCAATCATCCTGCACACCCCAAGCGCTGCAGCACTTCCTCTGGACGTTCGTGGATGTAGTGGACAAACCGAATAATGGCTTGAATGATATCATGGCGATCTTTGTGAAACACATTGGCCCTCACTGTATCTTTCCGCCATTTCCATAAGCGTTCGATCGGATTCAGTTGCGGTGAATATGGGGGAAGGTAAATAAAGTGAAAACACTGCCCTTCTTTCGGCAAAAACTCCTTGACCATTTTGGCATGGTGAATGCGGGCGTGATCCAACACCAAGATCATGAGGCGGTCCGGATTGCGCTCTTTGAGCATTCTCAAGAAATCCAAGAACGTCGCGGCATGGGCAGCGGTCGTTTGATGAAGTACCGTTTCGCCATCGTGTATGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTATCTGAACGTAGTGGGATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 50662-50244 **** Predicted by CRISPRDetect 2.4 *** >NZ_NADR01000013.1 Geobacillus sp. 46C-IIa scaffold_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 50661 29 100.0 35 ............................. CGCAATAGCCGACCACATGCGGCTCTTCCTGACGG 50597 29 100.0 35 ............................. GAAAATAAATATCGCCATTTTCCACTAACACTTGC 50533 29 100.0 36 ............................. ATGACTTTATTGCGGCAAAGTTGACGAAAGAACAGC 50468 29 100.0 36 ............................. TCACGAGGGTTTCGCCGTATCGTTCGGACCCGCCTC 50403 29 93.1 37 ............T..............G. GTGTATACGGGCGCATACGTCCGCACTCTCGGCCGTC 50337 29 100.0 36 ............................. CTGAAAGCAACAACTTCGTCCTAAAAGGGATTGCCC 50272 29 75.9 0 TT.....T.....C...C...C......T | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 95.6 36 GGTTTATCTGAACGTAGTGGGATTTAAAG # Left flank : GGTATTTAACGGAAAAAGAATACCGGAAGCGTATCGATTTTTCCGATGGGGAAACGAGACGTATTTGGGAGTACGATGAGGAAAAGGTGAGCAAATTGATTGCCCGCATGCCGATGACAAAATGGAGCAGCAGTTCAAGGGGGCTGATCTCCTTTGAAAACAACGTGTTTGCACTCCAATTTTCCATCGCGCATGAACATGAAGAAATCTTGTACAATTGGACGAAAGAAGTTTGCGAGTATCGGTTGCATGTGTATTTTGAAAGGAAAGAGAGATGAAAAATTGATATATACAGTTGTTTCATTGGACGTTAAAAATCTGCAGTGAACCTCATTTTGATGGATAAACGGGGAAAGGCTTGGTTTATCAAGGGAAGTGACTCATTATTTGTATAACATAGAAAACACGATGATCGCTTTACTGCAAAATGAGGTATCATAGCTGTGTAGACGTTAGCCAGAATTGTGCATTACAGCAATAGTTTTGTTTTGTGATCGACA # Right flank : TTAAATAAAAAAGTACTTTATAAAGAATATCGTGCATGGAGCAGTGGTGACTATGTAGTGATGGGTAAAGCCATCGACAGGGGGGCACATTGCCTGAACGCATGAGGATCAATATGTAAAACAATGCTTGACATGATAAGTCTGAAACGGGCGAATCGACTCATTGGCAGAATGCTTTGATAGGAGGCATTCTGCTTTTTTGTAGCAACAAATACAAAAAAACAACAAGGCTTATCTAAAAATTTTATTAAGTGACAAATTGCGACAAAATTTTTATCTATAACAAGATAATATATAGGTAAAAAGGAGGTGCATCATGAGACTTATCTGTTCTTTTGTTGCTGAAAAAATGCCTATTTCATACCGGATGATGTTAGTATCTGTGATAAAGGAGTCATTACGAATATCGGATGAACAATATTATAAGCGTTTTTATGAAAACACATCCATGAAACCGTTTGTGTTTTCCACATATTTGAAAGACTTTCATTTTGTTGATC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTATCTGAACGTAGTGGGATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 57594-57743 **** Predicted by CRISPRDetect 2.4 *** >NZ_NADR01000015.1 Geobacillus sp. 46C-IIa scaffold_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 57594 30 100.0 22 .............................. GAAGCGGAGGATCGCCGTGTTA 57646 30 100.0 38 .............................. ATAAGCTCCACAACCGGCATAAACGCGGCGGTGATCTT 57714 30 90.0 0 ..........................CCC. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 96.7 30 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AACACGCCGCTGGTGGTGGACGGTCGGAATTGCTACGACCCGAAGGCGGCGGAAGCCGCCGGCTTAATCTACGAGTCGGTCGGGCGGCCGGCCGGCTCGGGACTGCGGGCGGAGGATGAGGCCGCTGATGTGCAGCGGCAGGTGTAAGGAATTGAACTAGGAAGGAAACAAGGGCATCAACAAGAGATCGCGGAAGGCAACCTCGACGTGGCGAAGAGAATGCTGGCGAAAGGACGCGATGTCGACGCAATCCGTGAACTGACCGGGCTTCTGGTGGAGAAGATTGAAAAGGTGAAGAGGTAGGCCGGCCCTTCGCTGCTGGTCCAACTGTTGTCGTCGATCCCCAATCGTGCAAAAAACCTGGGGGATCGACGACAATTCGTTTATGCGCTTCAACCTTACAGGCATCAGGGAAGAAGCTTGTTGACAGAATTTTTAAAACGTGTTATTCTGGAGGCGAGAAAAGAACGCAAGGCTTGATATATTAAGATGTTTTTGGG # Right flank : CCCTGTTTAACAGTCAAATCACGTGGTACGGGGACAGTTTTATCGGCAACTTATAACGAATCGAACTCTACAGCGCGCTGTTGTTGTCTCTTTTGCGTTGGGTATATTTTATGATCCTAAAACTGGGAAACCCCCACTTCTGATCGGATCAGGGGAATTGTGGAATATGCCGAGAAGGCTTGATTCATAGTCTAGTGCAGGGTGGGTGTTTGCCAAAAATCTCCCGCCTTGAAACGTAAGTGGGGGGCATTCTTGGCGCGTTTTATGAAGGAATGAAACGCATATTTTCCATCTCCATGTACAGGATGCCCCTATCCTATGATGGAAACGAGAAAGAGCGGCTTTTCAAGAGGCTGCTTTTTTGTTTTTGTTGTGAAACGTTTTAAAATTTCAGTCAATTCGTTTATAATTTTATTATCTAGCACTGTTTCTGCTCACAAAATGAGTTCAAAGCAGGGAATGAATTCATGTCTGTTGCTAGGTGGGTATTTGTACGTATT # Questionable array : NO Score: 7.59 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.59, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //