Array 1 1077059-1078245 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LR588408.1 Klebsiella pneumoniae strain NCTC11698 chromosome 1		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   1077059	    29	 100.0	    32	.............................	CGTCCAGCAGGGCGCTTTTTATTTGTTAATGC	
   1077120	    28	  96.6	    32	.....-.......................	GTGCCGGTTAAACCTACGAGGGAGATTCTCGA	
   1077180	    29	 100.0	    32	.............................	GGCAAATCAAGTTGCACCGAGATCGCCGCGCG	
   1077241	    29	 100.0	    32	.............................	TGTTGCAGGGCTGGACCCCCACCCCGGCGAAT	
   1077302	    29	 100.0	    32	.............................	CGGCGCCTCAGCTTCTCGGTCGTTTGGCTAAA	
   1077363	    29	 100.0	    32	.............................	GAAAATTCGAGTAATTTTCGGGGGATTTCGTG	
   1077424	    29	 100.0	    32	.............................	CTGATCCCCTCCAACAACACGCCAGGCACAGC	
   1077485	    29	 100.0	    32	.............................	CAGGCAACTATTGAAAGTTACGGCATCTTACA	
   1077546	    29	 100.0	    32	.............................	CTATGTGCAGGACTTGTTTGGGATGGAAATGC	
   1077607	    29	 100.0	    32	.............................	GTGAGAAACATCTGTGCTGACCTGACAATCGC	
   1077668	    29	 100.0	    32	.............................	CTGCGCAGCGCATTAACCGTATTTTCAGTAAT	
   1077729	    29	  96.6	    32	...........C.................	CCTACGATTTCGGCTTTCAAGAGTTTTTTCTG	
   1077790	    29	  96.6	    32	........T....................	TCCGTAAATAACGCCAGAATCGGTATCTTTTA	
   1077851	    29	 100.0	    32	.............................	ATGGTTTACGGGCTGTTCGTTTTCGAGCTTTC	
   1077912	    29	 100.0	    32	.............................	CTCAAACCCGTTATCGCGGCAATGATTAAAGA	
   1077973	    29	 100.0	    32	.............................	TTCATTGTTTTCTCCGTATTGAGTGCGGGTAG	
   1078034	    29	 100.0	    32	.............................	CTCCTCCATGGGCGAACTAATGACGACGCTCA	
   1078095	    29	 100.0	    32	.............................	CCAGGCGACCGTATCTGGGTGCGTGAAACGTG	
   1078156	    29	 100.0	    32	.............................	ACTGATATCACCGAACTGGCTCGGGCCATGAA	
   1078217	    29	  75.9	     0	...........ATTC...A......G..C	|                               	
==========	======	======	======	=============================	================================	==================
        20	    29	  98.3	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGAACCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTATTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT
# Right flank :  CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGTTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCATCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGTGCCATCTCATAGCCTGTCAATT

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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