Array 1 761247-764071 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPJ01000001.1 Flavobacterium branchiophilum strain DSM 24789 Ga0242564_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 761247 36 100.0 27 .................................... GTTTATCCGAAGAGAAACGTCCTGTTT 761310 36 100.0 26 .................................... ACATATAGTAAGATATTATTTTTTCG 761372 36 100.0 27 .................................... AAGAATAGTAATTTTTTTGAGGCATTG 761435 36 100.0 27 .................................... AGTGCGACTTGAAGCTACAAATAAAGA 761498 36 100.0 27 .................................... ACAATTATTTTAGCGGTATTAATCTTG 761561 36 100.0 27 .................................... GAGCATGGGAAAAAGCATTCAAAAAGA 761624 36 100.0 27 .................................... GCTAAAGAAACGGATACTATCGAGCTT 761687 36 100.0 28 .................................... GTTTCTAAATGCAAGCATTTTATTTTAT 761751 36 100.0 26 .................................... TCCAAGCCGTTTTTGATGTTTACGCT 761813 36 100.0 26 .................................... AGTTAATTCTTCTGAATATTGTTCTT 761875 36 100.0 27 .................................... AACTTCTAAGATATTCGTACTTTCTGA 761938 36 100.0 29 .................................... TTCTCATGTTTTATTTATTTTTTACAAAA 762003 36 100.0 29 .................................... TGGAAAATCTGTAGTTGATGATAGAATTG 762068 36 100.0 27 .................................... TTAGATAACTTTTTGGATATTAAATAA 762131 36 100.0 28 .................................... GACGACAGGGGGCGTACGATTGGTTTTG 762195 36 100.0 27 .................................... ATTTCGGCCTGTTTGCTGGGAGCTTGT 762258 36 100.0 28 .................................... TTTTGGTCTACTTTAGTAAGTTTTACCC 762322 36 100.0 27 .................................... GTATTTAAGTTTTAGATCTTCAAATGT 762385 36 100.0 28 .................................... GGATTGAATTTGCAACACTTGAAAAACA 762449 36 100.0 26 .................................... TTATGGTAAAGAGTTCCAACTTAAAG 762511 36 100.0 27 .................................... AATCGTAGTACTTCCTAACCAATTTAT 762574 36 100.0 29 .................................... GCGTAGTGTGCATCTTGAGCCGATAATAG 762639 36 100.0 28 .................................... ATTCAATGGCACTCATACCTAATTCCTT 762703 36 100.0 27 .................................... TACTAAAAAGCTAATTAGTATTCCAAT 762766 36 100.0 27 .................................... GTTGGGATTGATCCCGACATTAAAAAA 762829 36 100.0 26 .................................... TGGTACCGACACTCACGGAATAAAAA 762891 36 100.0 27 .................................... GTTGATCTTGCCACTTCAACGAATTAA 762954 36 100.0 28 .................................... GTCAATTGGCTATAATGTTTAAATTGAA 763018 36 100.0 28 .................................... GCTGGGTATCACGGTTGGGTAAAAACTA 763082 36 100.0 28 .................................... ACGTTATTAAAATGTTTGCAGGAATTTT 763146 36 100.0 28 .................................... CGTTAGCTTCAATCACATTTCCTTTGAT 763210 36 100.0 28 .................................... GGATGGTGTACTTTTAGCATATCTTCTT 763274 36 100.0 29 .................................... TAGTTGAAAACGTTGCTAAAGTGAATTAT 763339 36 100.0 27 .................................... AATTGTGTGTACTGGACTACGCTCATT 763402 36 100.0 28 .................................... TCCCCTGCAATTTCTCGGAACTTTCTCG 763466 36 100.0 26 .................................... CTCTTGGATGAATGCTTGTTTTTTTA 763528 36 100.0 27 .................................... TGGCACATTTTACCAAAGAACCTTCGT 763591 36 100.0 27 .................................... GAGTTAAACTATTACAGTCCAACCAAG 763654 36 100.0 28 .................................... ATAGTACAATACCTGTCGCTAAAGTTGA 763718 36 100.0 28 .................................... AATATCTATGGGCGGCCAGCATCAGACT 763782 36 100.0 27 .................................... CAAAAACAATTCAAAGATCATCTTGGA 763845 36 100.0 29 .................................... AAACGCCTTTGTAAGTGAAATTAGCATCG 763910 36 100.0 27 .................................... CTTGAAACTATACAGAACCTAAAAACG 763973 36 100.0 27 .................................... GTTGATGATGCTACGGGCAGGCATCAC 764036 36 94.4 0 ..................................TA | ========== ====== ====== ====== ==================================== ============================= ================== 45 36 99.9 27 GTTTAAAACCACTTTAAAATTTCTACTATTGTAGAT # Left flank : AAAAATAAAAAGTAAAAAATATGTTATTAGTATCCTACGACATCAGCAACAACAAAACACGAACCCATTTTTCAAAATATTTGAGCAAATTTGGTCATCGGTTGCAATATTCGTTGTTTGAGATAGACAACAGCAAGCGGATTTTGAATTTGATTCAAATTGAAATTAAGACCAAATATGCCAAACAATTTGAAGAAACGGATAGCATTATGATTTTTCAGATGAGTCCGAGTTGTGTTATTACAAAATATGGTTATGCCAAGCATCAGGACGAAGATTTGGTTTTGTTTTGAAAAAAAAAACTTTGAATTAGAGAAAAAAAGTTATAGGTTTGCATCGGATTGCATGGTTACTATTGTAAAAAAATGCAAACCTGGGTCTTAATAATAATAATACTGACAAAAGGCATGAAAACAAGCTTTCGAATGCTGTTTTTTTATTTAAAAGCAACCAAAAACGGTAAAAAAGGGTTGTTTTTGTGTCATTTTGGCAGTGTTAGA # Right flank : AGAAAATGCCACAGATGCACAGATGTTTTTTTTTAAATCTCGAATTTCTACTATGGGGTTGTGGTTGATGATTGGTGGTTTGTGGTTGATGGTTGATGGTTGATGGCTGATGGTTGATGGTTGTTGGTTGATGGTTGTTGGTTGATAGCTGAAACTTGAAACTTGAAACCTGAAACTTGAAACTTCTAACCTCTAACTTCTAACTTCTAACCTGAAACCAAAGAGTGCCGTCAAAAGTTTGGCTATCGGAGCCATTTTTTGGCTTTTTCTTGAATGATGGCGGCTACTGTTCTGTTTTCGATTTTGCTTTCGAGCCACGAAATGATGTCTAAATACAAAAAGGCTCTTTTTTCATAAGGGTGGTTTTCGTATTGCAACAATTGGGTGTGTAGTTTTTTAAACGCTGATTTGAGTTCGCTTGGGTATATTTTGTCTAAATTTTTCAAAAACTTGATCATTTCTTTCTGAACTTCGTGCAAATCGTTCATTTTGATCAAATA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACCACTTTAAAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 3393858-3392210 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPJ01000001.1 Flavobacterium branchiophilum strain DSM 24789 Ga0242564_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================== ================== 3393857 36 86.1 78 .AAT.TA............................. CAATAGTACAAACACAATCATCACTGCCTTGTTGTGGTTTACAAACACCAAAATAATATTTTTTATTGGAGTGTTTGT 3393743 36 86.1 78 .AAT.TA............................. TGGTGCTACTTTTGGAGCAATAGTGGCTGGGTTGTGGTTTACAAACACCAAAATAATATTTTTTATAGGTGTGTTTGT 3393629 36 86.1 30 .AAT.TA............................. TGAATGGATTCTTGCTAGAGAAAAAGACAT 3393563 36 100.0 30 .................................... TGAATCCATTGAATCAATGTCCGCAGATAC 3393497 36 100.0 30 .................................... TGCACGGATAACCGAAAAAATAAGTCTGAT 3393431 36 100.0 30 .................................... CTTTGCCTTCAAATGAATTAATGGCATCAA 3393365 36 100.0 30 .................................... AGTTTCTAAATTGAAAGATTTAGAACACTT 3393299 36 100.0 30 .................................... AATGGTTAAGACGGCTTGGAGGCTCTGAAA 3393233 36 100.0 29 .................................... TACATTGGAACTGCACCGTGTTAGCAGTT 3393168 36 100.0 29 .................................... CGTACTTTTAAGGAGCAGACTGATTTATG 3393103 36 100.0 30 .................................... AGATAGAAGCTACATCAGCTTATTTCGACA 3393037 36 100.0 30 .................................... AACGCAGTAATAGTTAAATCAGACCTTGAT 3392971 36 100.0 30 .................................... TTTTGTACCTGTGGAATTAAAGTTACCCCG 3392905 36 100.0 30 .................................... AATGCAACAAAAGGAATTTCAAACCAAAGT 3392839 36 100.0 30 .................................... TCGTTTGAGAATTATAAACATTTCCTGTCT 3392773 36 100.0 30 .................................... GTACCGCTCTCCGCTAATGAAAAAGCTATT 3392707 36 100.0 30 .................................... TCAAATATGAAAATATCCAAAGCAAGAAAA 3392641 36 100.0 30 .................................... GCATTTTTCAAAACAAAATAAGAAAGGCTT 3392575 36 100.0 30 .................................... TTATCTCGTGTGAACTGGATGAGACCGACA 3392509 36 100.0 30 .................................... TTTACAGCCGATAAGTTGGAAAGCATTTCC 3392443 36 100.0 30 .................................... TTTACAGCCGATAAGTTGGAAAGCATTGCC 3392377 36 100.0 30 .................................... ATAGTAAGCCTAATTTTTCTAGGCGTGGCA 3392311 36 100.0 30 .................................... GTTTTGAATTTAAAAGAAAAAACCCTTAAA 3392245 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================================== ================== 24 36 98.3 34 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATG # Left flank : TTTCGCTCAACTTATTACATTGGAATGACAAATAACTTGGGATTGCGATTACTTCAACATAAAGAAAATATAGAAAAAGGAATTAAAACATTTGCCTCTAAATACAATATTGAGTTTTTGGTATTTTACGAAAAGTTTACTTGGGTTCAAAAGGCAATAGAAAGAGAAAAAGAATTAAAAGGGTGGAAAAGAGAAAAAAAATTAGAATTAATTAGAAATTTTAATCCAAATTTTGAATTTTTAAACGATCGATTTATGTAAGAAAATAAATGATTCGATTTGTCATTCCGACGAAGGAGGAATCACATAACATGAGTAACAAATGCGATTCCTCCTCCGTCGGAATGACAAAAAGGAGACAAAAAGTTCTTTGACATACGTTTTCATGGTCTTAAACAGCCAAACCACAAAGACGATGTAAGAGTAATCTGTGCATCAGTGGCAATTTTAAAGTTGTGGTTTACAAACACCAAAATAATATTTTTTATTGGTGTGTTTGT # Right flank : AGTTGGCTTGTTGCCTTCTGATATTCAAGGGATTAATTGTAAATATCGTTATAAAAAATGCCTCTTTATAGGACTGATAACCCTATATTGAGGCATTTTTTGTTTTCTAAAACAGCTCTAGCTGTACAGGCATTGGTACTTTTGGCAACGGAGCTTGGCCCCAATAATTCATAATATTGCCAAACTGTTTGTCGGTTATCCGTACAACACTCACCTTGCCTAGTGGGGGCAACAATTGTACGATACGTTTTTCGTGTACGTCGGCACTCTCGCTACTGGCACAATGTCTTGTATATACAGAATATTGCATCATCGTAAATCCGTCGTTCAATAATTTGTTTCTAAAAACCGAGGCATCTTTACGGTTTTTTTTTGTTGCTGTGGGCAGGTCAAAAAATACAAACAACCACATTATCCGATATCCGTTGAGTTCCATAACTTGGCATATTTTATTTTTTTGCGTTCGCCCGTATAACATTGTTGTAGCGAGCTGGCTGTTT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //