Array 1 6768-6617 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARO01000014.1 Gilliamella apicola strain A-12-12 NODE_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6767 29 100.0 32 ............................. GGCAGGAAACTACGAGCGCTGAACCGTCGCTA 6706 29 100.0 32 ............................. AGCAGAATAATGGGCGATTTGTAACAATACCT 6645 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : AACTGACTAATTTCTATATTAGATTAGTCTAGAAAAGTATTTCTTATACATATAGATAAAACAGCTTTATTTGTAAATTAACCTAATTTAGGTTATTGGCATATGCATTAATTTATCATTTATCTATAATAATATATGGTTTTTTGTGTACCCAGTATGTACAGGGATAAACCGAATATGCCGAGCAGGCGAGAAAGCTGTCTCTGATGTTCCCTATATATACAGGGATAAATCGGGGATGCGTCAATATTACATAGCATTTTTTTGCTATTCAAATAATCGCAATTCTATATTTCATTGTTTACTATCTTTTTAATTATATGAAAAATATAAACTTATCGGTAAAATTTCGTAGAATCTAACTTTAATTTCCATCAATTTTAATTAATCAAATAAAAACATAAGGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTGGTAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : CCCTAGTGGCGGTTTTTCATTGCCCTTAATTTTTAAATAACATACCATTACCTAAAAAAGGAGATGGTATGAAAAGAATTGCATTACTAGGATTGGTTTGTTTTGCGTTGTCTGGTTGTGGTGATGATGGTGATGATGGTGGCGGTAAAGTTACTAATGAGTTTTTGGTTGGTAAGTGGGAGTGTAAATTGGACGGTTACAGATCAAAAATGAAAAATGGAAAATTTACTGATTATGTTAGCGATGGGTTTAATATAATAAGGAAGGTAGAATTCAAAATAGAAAATAATAAACTGTATAGTATAAGTAAAACTGAAATGGATGGACTTAGTTTTTGGGAATCGAATGATTGGGATGAAAGTGATATAACTATTACTCATACGGGGCAAACAGTAGAGAAAAAAGAAAATAATTTAATAGAAAAATCAACCAATTCTCTAATTAAAAAATCACATGATACATATTTAATGATTGAGGAATATATTAAAACTCCAAATGAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8624-8413 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARO01000014.1 Gilliamella apicola strain A-12-12 NODE_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8623 29 100.0 32 ............................. TATCGCGTAGGGCTGTTCGAGCTGGTGCTGTA 8562 29 100.0 31 ............................. GAAAGGGGGGGCGTTCGCCATACCTAACATG 8502 29 93.1 32 ............C.T.............. GCAGAACTAGACACAGAAGCAATCAGTGGATA 8441 29 82.8 0 GC...........G............T.A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TAGTATAAAAAAATCAATAAATAATTTATTTTAAATTTATGGTTATAAACAACACACCATGTTGAGCTAAGATAAACGTTTACTATTAATATTGAGTAATAGCTTACAAATAACAGCGTTTATAAAATTATTTCAATTCAAAAAAATATATTGAATTACTCAAAATTACAGAAATGCACTTTCAAAAAATGAGTACTTGAGATTAATTTGTGAAAATTTTATAACTAAACTACATCAACAAACAACTTAAAAAGTAGAGTTATTTTGATAACAACAAATCATTAAAAGCAGAACAATAAAAATTCCCATTTTTTAACTAAATGAAAAATATAAATTTATTGGTAGAATTCCGTAGAATCTAATTTTAATTTCCATCAATTCTAATTAATTAAATAAAAACAGTGTGTTATAAATACAGATTTTAATACAAAATAGCCTAAAAAATTGGTATAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TAATAGATTAGAAGTTGTTAATTTTATATGAATGGATTCTAAATATTATTTATACGACATATATTTGATTGATTAATGAGTTTTTAAGGTTTGCATGGTAAAAGTATAAAATAAATGAATTTTTACCTATCAGTATAGATAAGCAACTAAACTTATAAATACAAAGTTATTTTATTGATTATGCTCAATAGCGCTTACAGAATTTGTTTTGTTTATAACTGCATATTACGATCTCTTTCCATAAAATAGTTTATGAAAAGTCTTCATTTCAAAAGGAATTAATAATTTATTCACTTAACTGCTTTGGTGGTTTTTTATTGCCCAAATTATCTAAATAAAATACTATTACCCAAAATAAAATTTAAAGTATGAAAAAATTTAATTATTTTATCATCTGTTATTATTCAATAATAAATGGAAGTAAGGAATGAAAAATTTAATTGCAATTTCAATATTAACTTTGATCGGTTTCAACGCTTTTGCTAATGATAATGCAAAAA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 75226-74709 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARO01000010.1 Gilliamella apicola strain A-12-12 NODE_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ===================================== ================== 75225 26 100.0 35 .......................... CCGGTAACTAAGGTCAATAACACGGATGTTACGCT 75164 26 100.0 35 .......................... CCGGGTTAGAATTTAGTACATTTGCAGAATTAAAA 75103 26 100.0 35 .......................... CCGTTAGCAGTTTTCATAATATCATCAATAGATTC 75042 26 100.0 35 .......................... CCGACACGGATATTACCATAGGCGGAGATTTCGGT 74981 26 100.0 35 .......................... CTGGGCGTATAATTGATCGCCCTTAGTTAATAGGT 74920 26 88.5 35 .............G..T.T....... CCAAAAATGAAATCGATTACAGTTTTTGTGAAATC 74859 26 92.3 37 .........A......T......... CCGCTATAGTAATGGTACGCACAGATAATGCGTACGT 74796 26 96.2 36 ..............G........... CCGGTTATATATTTGCACTAAATTACGCCCTTCGGC 74734 26 96.2 0 ........................T. | ========== ====== ====== ====== ========================== ===================================== ================== 9 26 97.0 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCTTATTGAAGAAGTTTTGTCCGCTGGTGGTATCGAACCGCCTCTACCACCTGATGATGCCCTGCCACCCGCTATCCCAGAACCTCAATCTCTAGCCGATAGTGGCTTTAGGAGTCGCTAATATGAGTATGTGTATTGTGGTAACTGAAAATGTTCCACCACGATTACGTGGACGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATTGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTAGCAGAAGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGGTTGCCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : TAGTTAGATTAATTAGGTAAAGTAATGAAAGGCTTTTAGCTACAGGGTTATAAGCATATCTTCTCCTTAAAGTCTTAATAACGTTTTAACTTTATTTCTTTACCAATAATAGACATATATTTACTTTTATATTTTCATTAACATAAAAAATCGAATAATATTTATTAAAAATCTTGGATAGCTGTAAAATTCGTTTTAAAACACTAAAAATAAAGGTAACAGTTAACTAACTAAACTAATAATCAAAAATAGCGTACAATAGCGCGATATTAAACATATGATCATCATAAATAGTTTAGGAATTTAGCATGACAGGCAAATTTATTGTCATTGAAGGTATTGAAGGTGCGGGTAAAACGACAGCAGTCAATACCGTTGCTCGTATTTTAAATCAATATCATATTTGCGATTTACAATTTACTCGTGAACCAGGTGGTACACCAATTGCTGAAGCATTACGCAATCTTATTAAAAATGGTTTAGATGATGAACCTTTGACG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 138312-138101 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARO01000004.1 Gilliamella apicola strain A-12-12 NODE_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 138311 29 100.0 33 ............................. CAATCAGGCTAATCAACTAATGCAAATGCGCGC 138249 29 100.0 32 ............................. ATTTACAGGCTCAAATAGAGGTTTTGGAGAGC 138188 29 93.1 29 ...........G..T.............. GCTAGACACACACTACACAGACCCAGAGC 138130 29 79.3 0 ............C..........TTTT.T | T [138124] ========== ====== ====== ====== ============================= ================================= ================== 4 29 93.1 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TAACATTAACTTTATAGCATTAATTAGCCAGTAATAAAAATACCTGTTAAATCAAAACAATTTGCTTAAAAAACAACCCAAAAAGTTGGTAAAATTTTAATTCTCCTATTTTAATTATAAAACAAAAAGTTATAATTAGAGTGTTCCCTGTGCACACAGGGATAAACCATTGGAAAAACGCTAAAAATCAATCTTAGGTGCATGTTATCTGTACATACAGGGATAAACCGTCGATGTGTTAATATTACATAGCATTTTTTTGCTATTCAAAAAATCGCAATTCTATATTTTAATTTTATTGTTGACCATTTTTTAATTACATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTCCATTAATTTTAATTAATTTAATAAAAACATAGTGTTATGAATTATGATTTTGATGAAAAATATCTCAAAAAACCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAATATGTTATAATTGGT # Right flank : TTTATGCAAGATTTTGCTAATTTTTGTTAAAAAGTTTCAGGTTATGCCTACGTTTCAGTATAAAAATATATAAAATTAATCTAGTTAACTGATCAATTATCCGATGCACAGTAATACGTTATCAAGAGACATAATAACTAATGTATTAAAACCATACTTCAACAAAGTGAACAGTTAAAGTAACGTTTTGTTAGTTCTTGATGTTCATTGGTTATCTTCGTACAATAAAAAAAATTTTTATTTTGGTTTGTTATGCAATTACATTTAGTGGTTAATACGTTTGGATCTGACTTGCAGCATCGTTATGGAGAAAAGATCTATAAATTAACGTTACATGGTGGATTTAGTTGTCCAAATCGTGATGGTACTCTTGGTGTTGGCGGTTGCACTTTTTGTAATGTTGCGTCAATTATCGATGAATCTATCCAAGTTAAATCTATTTCTGACCAGCTTGCAACTCAAGCGCATCAAATGAAAAAATCAAAGCGTTATCTTGCCTA # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.40,-10.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //