Array 1 17836-20881 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNAH010000038.1 Harryflintia acetispora strain D54t1_190329_B8 NODE_38_length_29798_cov_34.2345, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 17836 33 100.0 34 ................................. GTCTATGACGATATGGGAACCACGGCTGAGCACG 17903 33 100.0 33 ................................. GTACATTCTGAAAGCGCTCGTTGGAATGGTTGG 17969 33 100.0 34 ................................. GTGTACCGATCTCCTAAAAGCTGGTCAGCCAGTG 18036 33 100.0 34 ................................. TTTGCAGAAATGAAAGCTATGGCAGATTAGCATA 18103 33 100.0 35 ................................. CCCTCACCCCCTCCCGTCTGAGCCTGCGCGAGCTG 18171 33 100.0 35 ................................. GGCTGGGTCATCACACGGGACATAGGCACGAGCTC 18239 33 100.0 33 ................................. AATGATCCCGATGAGCAGCAGCGCGATGCCATG 18305 33 100.0 34 ................................. CTGGACCAGGTCGGGCTCAACGACAACTACAACG 18372 33 100.0 33 ................................. ATATCCCCCTCTACTCTGATATTGTTGAATACC 18438 33 100.0 33 ................................. AGCCATTCAGAATCACGATCAGCGAGGACGTCG 18504 33 100.0 35 ................................. ATCTGCTGTTGGACCGAGGAATGAAAAAGGGCGAC 18572 33 100.0 33 ................................. AAAGATGAATACGGTAACGCTTATTTTACTTCA 18638 33 100.0 33 ................................. TCAAAATCCCGTTGAGCGTCATAGTCCTCGCAG 18704 33 100.0 36 ................................. TCTCATTGGCCAGCAGACCCAATGCCTCGCGCGGCC 18773 33 100.0 34 ................................. ACTAACTCTCCCTTTCTTAGCGGGGTTGTGACCG 18840 33 100.0 34 ................................. CCGTAACAAACAGAATTCCAGTAGTTAGCCCCTA 18907 33 100.0 36 ................................. ATTGCGCAGCTCGGGGCGGTGCAGTGCCTCCACCGA 18976 33 100.0 34 ................................. ATCAAACTGCTTGATGGCCTTATCCATGTACCGT 19043 33 100.0 34 ................................. ATCAAAGCCAAGGCGATAGTTATACAATCAAAAG 19110 33 100.0 33 ................................. GTTTCCGTATCGAGATATGGAACACATCGGGTC 19176 33 100.0 32 ................................. GTCAAACGAGGGGCCTTCTTCTTCGGGATCGG 19241 33 100.0 33 ................................. TCCAGGCGTATACTTCCTTGCACAGGCAACAAA 19307 33 100.0 34 ................................. AATCCACAAGCCATGATAGCCGCCTGTAGGATAG 19374 33 100.0 34 ................................. ACCTTGTTCCCGATGGTGCGGGGAGTGTCGTCGC 19441 33 100.0 35 ................................. CCGGTAAAAACGCCCGTGATAAAGTCAATCAGGCC 19509 33 100.0 36 ................................. ATCCCCGTCCGTCCCAGTTTCAGCACGGGGTATTTT 19578 33 100.0 34 ................................. TCCGCCACTTCGATGTACTTGGGGTTGATGTCGA 19645 33 100.0 36 ................................. GAGTTATCGGCAATATATAAAGTGTCTGAGTCCCCG 19714 33 100.0 33 ................................. CAAACGTCGCGCCGGTTGCGCAGAGGCCGGAAG 19780 33 100.0 34 ................................. CAAATGATTTGCGGCAAAAGACCAGTAGGAGCGA 19847 33 100.0 35 ................................. ATCGTTAGAAGCCGAGAATTGCACAAATAGCTTGC 19915 33 100.0 33 ................................. CTATGGCGGGCCGGAAGAACCAGGTTACCCAGC 19981 33 100.0 34 ................................. AACAAAAAGGGAGAGACACCGAGAAGACGGCTGT 20048 33 100.0 33 ................................. CCCATTGGGCACAGTCTAAATGCAGCATAACCA 20114 33 100.0 35 ................................. GCCCTCTCGCACAACAAACGTTCCTTTTGCGTCTC 20182 33 100.0 35 ................................. AACTAGGGCGACGATGATTGCAATAAGCGCTACAA 20250 33 100.0 33 ................................. GAGTTTGGAACAGCGGACGGAAGCACGCTCGAA 20316 32 93.9 33 ..........-.C.................... TCGGGCAAACTTCCCCATATGCCAGCAATCCGC C [20330] 20382 32 93.9 34 ..........-.C.................... ACCGTCGTCGTAGATGTCCAGGTAGACCATGGGG C [20396] 20449 32 93.9 33 ..........-.C.................... GTGAGGGATATGATATAAATCAAATTCGCCGTA C [20463] 20515 32 93.9 33 ..........-.C.................... TTTCCATTGGCGGCGGTGGTGGCGATCCTGACG C [20529] 20581 32 93.9 35 ..........-.C.................... ATCTTGGAGAGCATCACAACCCCGGAGGGGGATGT C [20595] 20649 32 90.9 34 ......T...-.C.................... CATTTATTGCTAAAAGACGAGCAGACGGCGGCCT C [20663] 20716 32 93.9 34 ..........-.C.................... ACGGGCGGTAATATCCTCACCACCTGTGTACTGC C [20730] 20783 32 93.9 33 ..........-.C.................... TATATAAAAACAATGTGCGTAAGTGGATTTGCC C [20797] 20849 32 93.9 0 ..........-.C.................... | C [20863] ========== ====== ====== ====== ================================= ==================================== ================== 46 33 98.7 34 GTCGCACCCCGTGAGGGGTGCGTGGATAGAAAT # Left flank : TTTTTATGGAAATAAAGGGGTTTAACGATGTTGGTTCTCATCACCTATGATGTCAGCACCGAGGACGCAGCAGGCCGTAAACGCCTGCGTCAGATTGCCAAACAATGTGTCAATTATGGCCAACGTGTTCAGAATTCGGTATTCGAATGTCTATTGGATGCTGCGCAATGCCGCTTGCTCCAATCCAAACTTTGTTCTATTATAGATACCGAACAAGACAGTTTAAGGTTTTACTATCTCGGAAATAAGTATGATACTAAAATTGAGCATTTTGGCGCCGGCAAAAGCTATCAGCCCGAGGGCCCGCTGATCATCTGAGCTGTGCGAAGCACAAGCAAACACCTTTTCACTGATGTTTCGCACTTATCTTTTTTATTAAAAAGCTATATTTTAAGAAATTTTATCTGTTTTAATCGTTTAGATGGGCTATTTTATTTGATATTCCCATTGATATTTGACAAAAGTGGCAAAAGATTAAAGCTATATCTGTCATTTTTGCT # Right flank : TACCAATGAAAGATATTATACATTTAAGCGCACAAGACGAAGAAAGTTCTCAAGTAGATCAAAGAGCGGGATTAAATAAGCCATTACAATCAAGAGCGGTGTTTTTTGATAATAAAAGAATACCTTATCAGAAGAAACCCTGTGAGAGCATTCAATTCTTTTGGAAAAAGCTAAGGGATACTGGTAGTGATGTCTCTTTTCCTGTTAAGATTTATGAGAACAAAGGGAGGGGCTTATTTAAGTTCTCTAAGTATACAGCAAAGGAGGATATTGAAAATGTATTATTCTCAATTATTGATGCTCAGTAATAGTTTTTCAGAGAATACACTTGATAATATGGATAAATACCTTTCAGGCTTGTCTCCCGCAGCTCAAAAGCTAATTACTATTTCAAAAGTGTCTGACGCTCTCCAACTTGATTATCAGACAACTTCAGAATCACCTAAAAAAGTGCTTGGATATAGGATTATTCAAGAAAAGATACGCATTAAAATGCCATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGTGAGGGGTGCGTGGATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //