Array 1 3918440-3916776 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CP066851.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SH-2813-Parental 2 chromosome, complete genome Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ========================================================================== ==================
3918439 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT
3918378 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG
3918317 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT
3918256 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA
3918189 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT
3918128 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC
3918067 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT
3918006 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA
3917945 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG
3917884 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA
3917823 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA
3917762 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC
3917701 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC
3917640 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
3917579 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT
3917518 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG
3917457 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG
3917396 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC
3917335 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC
3917232 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
3917171 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA
3917110 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA
3917049 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC
3916988 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
3916927 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
3916866 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
3916805 29 96.6 0 A............................ | A [3916778]
========== ====== ====== ====== ============================= ========================================================================== ==================
27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT
# Questionable array : NO Score: 6.13
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.92 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 3935519-3934698 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CP066851.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SH-2813-Parental 2 chromosome, complete genome Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
3935518 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA
3935457 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA
3935396 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC
3935335 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG
3935274 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
3935213 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
3935152 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
3935091 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
3935030 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
3934969 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
3934908 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA
3934847 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
3934786 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT
3934725 28 82.8 0 ...............A.AA.....G-... |
========== ====== ====== ====== ============================= ================================ ==================
14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT
# Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC
# Questionable array : NO Score: 6.19
# Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.65 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//