Array 1 3918440-3916776 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP066851.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SH-2813-Parental 2 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                                                           	Insertion/Deletion
==========	======	======	======	=============================	==========================================================================	==================
   3918439	    29	 100.0	    32	.............................	GGGAAAAATCAATAAAATCAATGATAAGCAGT                                          	
   3918378	    29	 100.0	    32	.............................	GCTGGGTAGTGGAGTAATCATTATGTGTGGTG                                          	
   3918317	    29	 100.0	    32	.............................	CAGTGAGATGCCGCCAATTTGTCAAATAAAAT                                          	
   3918256	    29	 100.0	    38	.............................	CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA                                    	
   3918189	    29	 100.0	    32	.............................	CCTTTAATCGCCTCTTATCGCCTGGATTGGTT                                          	
   3918128	    29	 100.0	    32	.............................	TTAAATCCATATACGGGCCTTGCGGGTTTGCC                                          	
   3918067	    29	 100.0	    32	.............................	GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT                                          	
   3918006	    29	 100.0	    32	.............................	GCGCGCCAATAATTTTATTGACGATTTCATCA                                          	
   3917945	    29	 100.0	    32	.............................	CCGCTGACGCACTGGATCAACCTGACGCAACG                                          	
   3917884	    29	 100.0	    32	.............................	TTGCAGGGCGATATTGTTGTTGGTGAATGGGA                                          	
   3917823	    29	 100.0	    32	.............................	CGTCGCGGAAAATTTCGCATTGACGATAAAGA                                          	
   3917762	    29	 100.0	    32	.............................	TTACGTGTTTATTCATCTGTTGCATTAGATTC                                          	
   3917701	    29	  96.6	    32	............................T	GAGGCGTACAGGCTGTTAGATGAGAAATTACC                                          	
   3917640	    29	 100.0	    32	.............................	ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC                                          	
   3917579	    29	  96.6	    32	......T......................	GTTTGCCGTATCTTCGATCATACCGGAACGGT                                          	
   3917518	    29	 100.0	    32	.............................	TGGATTATCTGTATTTTACGGAAGTGGGCGCG                                          	
   3917457	    29	 100.0	    32	.............................	GTCGTTCATCAGGCACTACCGGCACTTTCTGG                                          	
   3917396	    29	 100.0	    32	.............................	ATATTCGCCGCTTTCCATTTACCGAACGTAAC                                          	
   3917335	    29	 100.0	    74	.............................	AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC	
   3917232	    29	 100.0	    32	.............................	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT                                          	
   3917171	    29	 100.0	    32	.............................	TTCTTGAATATGATTGCGGGTATATGTGGATA                                          	
   3917110	    29	 100.0	    32	.............................	TCTGGTTATAACATCGCAGCAAAATCAAAAGA                                          	
   3917049	    29	 100.0	    32	.............................	GCAACCCATTAATTAACTAAGCAGTAATAAAC                                          	
   3916988	    29	 100.0	    32	.............................	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA                                          	
   3916927	    29	  96.6	    32	.....T.......................	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC                                          	
   3916866	    29	 100.0	    32	.............................	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA                                          	
   3916805	    29	  96.6	     0	A............................	|                                                                         	A [3916778]
==========	======	======	======	=============================	==========================================================================	==================
        27	    29	  99.5	    34	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                                                          	       

# Left flank :   GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank :  TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT

# Questionable array : NO	 Score: 6.13
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 2 3935519-3934698 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP066851.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SH-2813-Parental 2 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   3935518	    29	 100.0	    32	.............................	TTCCAGAACCGTTTGACTTACTGTGGCCATTA	
   3935457	    29	 100.0	    32	.............................	GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA	
   3935396	    29	 100.0	    32	.............................	CTCCAGCGCTCGAATTTATTTGAGGCCACCAC	
   3935335	    29	 100.0	    32	.............................	TTTTGATACGTAGTATTCATTACGCCTCCTAG	
   3935274	    29	 100.0	    32	.............................	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC	
   3935213	    29	 100.0	    32	.............................	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC	
   3935152	    29	 100.0	    32	.............................	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA	
   3935091	    29	 100.0	    32	.............................	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC	
   3935030	    29	 100.0	    32	.............................	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT	
   3934969	    29	 100.0	    32	.............................	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT	
   3934908	    29	 100.0	    32	.............................	CAGGTTATGCGCAAAAATTAATTCATATTATA	
   3934847	    29	  96.6	    32	.................A...........	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA	
   3934786	    29	 100.0	    32	.............................	CGTTCATCGGCAGCGTCACGCAATATGAAGAT	
   3934725	    28	  82.8	     0	...............A.AA.....G-...	|                               	
==========	======	======	======	=============================	================================	==================
        14	    29	  98.5	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT
# Right flank :  TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//