Array 1 239-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKYZ01000308.1 Klebsiella pneumoniae strain AS012253 AS012253_309, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 238 29 100.0 32 ............................. CGCTGGCGAGCCGTCATAGATGTTCAGCCGGA 177 29 100.0 32 ............................. CCTGGCAACACGGTCGGCGTATTCGGCGCGTC 116 29 96.6 32 .G........................... GCAGATCGGCAACCGCTCTCCTACGAACAGGT 55 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTGCCCCGCCTGCGCGGGGATGAACCG # Left flank : CCCAATTCGGGTTGAACG # Right flank : GGCTACCTGCGCGAGGCCTATGACTAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGCCCCGCCTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCCTGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [16.7-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6054-5176 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKYZ01000047.1 Klebsiella pneumoniae strain AS012253 AS012253_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6053 29 100.0 32 ............................. TCACTTTGCGCGCAGCTGGGACATGTAAGTTA 5992 29 100.0 32 ............................. CTGACCTACTGACGGAAATCCCGCCTGCTTGA 5931 29 100.0 32 ............................. TGAGGAGCTCGTTGACCTGCAGGCACATCCCT 5870 29 100.0 32 ............................. TAATTCAGGAAATGAATTCTAAAATCGACTCT 5809 28 89.7 32 .....-......CA............... GCCATGCAACGTCTGAACGTCCGAAACATCCC 5749 29 93.1 32 ............CT............... CGAATCCTCAGCGCGTGTCACGGTGACTGACC 5688 28 89.7 30 .............A..T....-....... TTACTTTAAGTAGTGCATTTTTTTGTGTTT 5630 29 93.1 32 ............CT............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 5569 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 5509 29 89.7 32 ............CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 5448 29 96.6 32 .............C............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 5387 29 100.0 32 ............................. AATCGACATCTCGTCCGTGGATGCGAAAAACA 5326 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 5265 29 93.1 32 ............CA............... GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG 5204 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 95.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCTTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : GCTGGATTTCCGTCAGTTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTTTCCGGCAGTGGATTAAAGTATTCCCCCCGCTTGCGGGGGTTATCGGTGACTTTTAAAAAAAATCAGCTGAAACAGCCGGTATTCCCCCGTGTGCGGGGGTTATCGGTTCCGGACTCCTGTTTCCGGCAGTGGATTAAAGTATTCCCCCCGCATGCGGGGGTTATCGGCACTACCAGATCCGAATGGACACCCGTAATGAGTATTCCCCCCGCACGCGGGGGTATCGACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGATAAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //