Array 1 87226-88068 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFHD01000005.1 Gemmiger sp. An87 An87_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 87226 33 100.0 35 ................................. ACCGAGTATGAGTATGAGAGGACAAAAGACGGGGA 87294 33 100.0 34 ................................. GTCCCACAGCGGGACGAACTCGGTCAACTTGAAC 87361 33 100.0 34 ................................. TGTTGGGTGATAAACCGGTTGAAAAAGTTGCTGC 87428 33 100.0 33 ................................. TCCTTGCGGTATTTCCCTTTCTCCTTGTTCCAG 87494 33 100.0 36 ................................. CACGTAACTCCCCAGCGACCGGCGAATCACCGGGGT 87563 33 100.0 36 ................................. CTCGATAGGCATTTCCCCGGCTACAGGCCACTCCAG 87632 33 100.0 33 ................................. TTCAATCTCTGAAACATAAGCGCCCTCACAGCA 87698 33 100.0 34 ................................. TGACGATCATGCACTTATATTCCCAGCTAGGGCC 87765 33 100.0 35 ................................. TTGCTCATCAGTCCGTTTCCCACCAGCAGTATGCC 87833 33 100.0 34 ................................. TTGTTCGTCATATGACTTTTTTAGTCGATCATAC 87900 33 100.0 34 ................................. TTCCTGCGCCTGCCGGTCGCCCAGAAGAGCTCGC 87967 33 100.0 35 ................................. AAAATACCAAAAATACAATTTTCGCGGGAGGAGGT 88035 32 81.8 0 ....................AT.CT.-.....A | A,C [88055,88065] ========== ====== ====== ====== ================================= ==================================== ================== 13 33 98.6 34 GTCGCTCTCCGCGAGGAGAGCGTGGATAGAAAT # Left flank : AAAGGCATCTGGAGAAACATGGAATAAAGACAGCAACAGGGAAAGATATTTGGAGCACATCAACCATCGACCGTATGCTGAGCAATGAAAAGTACATTGGTAATGCGCTGATGCAGAAAATCTATACGCCTGATTTTTTAACGGGTAAGCAGGAAAAGAACGATGGGACTTTCAGTATGTTTTTCGTGGAGAATGCGCATGAAGCAATTGTTGATAAAGAAATATTCGAAAAGGTTCAAGAGAGGAAAAAAGCGCATTCAAAAAAACTTGAAATTTTTGTCTTGAGGCGTATGGTTAGATGGAGACTAGAAAAGATTGTTTTTACTCTAGTGCGAGTATGAAAAGAACATCAAAACCCAGGAGTCTTCGCACCAAAGAAGTGCCTTTTGAAATGTATAAAACGTTGAAAGGACTTTGACAAATCTCTAAAAATCGCGTATGGTAATGGTAGTATAGCAAGTTTGACTACAAAAAGAACCGATTTTTTGTAGCATTTTGCT # Right flank : AGCGTAGTTTTCGGTTTAGCATTGTGCTGAAAACTACGCTTTTGTTTGTTTTGACGTAATATTTAGGAACAGGTAATAATTTAAAAAGCTTTATGATAAGTAGGTTGGAATGGGAAAATCAGGAAATAAATCCGTACTATTGGACATTCAGCGTGTTATACTTTAGAAAAGAGTTACAGTTGAATGCGGAGGTGAAAACATGAACTCCATGGATGAATCCTATAGATTGGCACATGTTTCTGAGGATGGGTTACGCCAGCAAACGATTTTGGAACATTTGAATGGAACGGCAAATCTGGCTTCCGGTTTTGCAGAACCCTTTGGTGCTGCGGCACAGGCGTATCTGGCGGGAATGCTGCACGATATCGGAAAATACAGCGATGCGTTCCAAAAACGACTGGCTGGTGGGGAAAAAACAGATCATTCCACTGCCGGTGCGCAGGAGGCCTTTTCCATGAGGCAGCTGGAGGTGGCTTTTGCAGTGGCAGGACACCATGGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCGAGGAGAGCGTGGATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCGAGGAGAGCGTGGATAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 95914-98304 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFHD01000005.1 Gemmiger sp. An87 An87_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 95914 33 100.0 38 ................................. TTGGTCGTAGCTTTGGCCGTGCCGCCGCATGCAGGGCA 95985 33 100.0 35 ................................. TTGCATGCGTCTCCAGCGACACCGCAATATCATCG 96053 33 100.0 34 ................................. CGCTGGTTTTTGATAAGACCATCAAGCCCGGGGA 96120 33 100.0 34 ................................. TGCAATGTCCAGTATATCATACTTGCATCGTCTA 96187 33 100.0 36 ................................. AGGCTGGAAAACCAAAGAATCATAAACCCGCAAGAT 96256 33 100.0 35 ................................. ATACCACAAAATGCCGATATGACCAAACGGCGGTT 96324 33 100.0 33 ................................. ATACCACAAAATGCCGATATGACCAAACGGCGG 96390 33 100.0 34 ................................. ACAGTTTGCGTATCGCCAATGTGTCACGGCTTAA 96457 33 100.0 36 ................................. TTCTGGAAAACACCACGAGCCACAAGGAGGACTAAG 96526 33 100.0 35 ................................. TACACCGAGGGCAGCAACCCCGCGACCTACACCCC 96594 33 100.0 35 ................................. CACCATCAACGGGTAAAGCTCATCCCAGATAGAGA 96662 33 100.0 34 ................................. CAGTTGAACGACGGTGTAACCTCCGGCCAGACCG 96729 33 100.0 34 ................................. CGAGGAGCTGGAAGTCAAGAACCTGGACGGCACG 96796 33 100.0 33 ................................. TTGTCCATGGTGGAGCAGGCCGGTTACTACGGC 96862 33 100.0 33 ................................. AGCTCGGCCAGCATCAGATGGCCGGAGTGATAA 96928 33 100.0 33 ................................. CATAGAGCTGCGCGGCAAACTGAGAGATGGACA 96994 33 100.0 33 ................................. TGCATCCTCGGCGCTGGTGGCGCTGGGCTTGGG 97060 33 100.0 35 ................................. CTGGACAATCTCCCGAGCCTGCACAGACAGCGCCT 97128 33 100.0 36 ................................. CTTCAGAACCTTCTGCACAAACTCGTCCAGCGGCTG 97197 33 100.0 34 ................................. TCTTGCCCCTATCCTTGCCCGCCTTCGCATACAG 97264 33 100.0 35 ................................. CACCAGCATAAAGCGCGGATATTTTGCCACCAACC 97332 33 100.0 35 ................................. GCTTCGTCCTTGGAAATGTAGTTCACCGACAGGCG 97400 33 100.0 34 ................................. CTCGTACACGCGGCAGATTTTGGGGTACTGGGCC 97467 33 100.0 34 ................................. CTTCCAGTGTGGGGCGGCAGTGCAGCCTAAGGCG 97534 33 100.0 33 ................................. CACGTAACTCCCCAGCGACCGGCGAATCACCGG 97600 33 100.0 35 ................................. TTGATGTCAGCCAGAGTGATGGTGATGTCCTCGCC 97668 33 100.0 34 ................................. AGCCTGGACGACAGAACCAAACCCGGCCAGCCCA 97735 33 100.0 33 ................................. CGCTAACGTCCATTGTTCGCTGCCGTCAAACGT 97801 33 100.0 34 ................................. TCGGTCGTACCGTCTGGTGCGCCCGGTTTTGCCG 97868 33 100.0 35 ................................. CTTTCTTTCTTCGAAGAAGAAGAAACAGGCTCAGG 97936 33 100.0 34 ................................. TGTACGGCAAGGGTGCCGCATCCAAGATGCCCAT 98003 33 100.0 34 ................................. AAAAAGCGGGCGGCGAATATGTGGTACTTTTCCC 98070 33 97.0 34 ..........A...................... GACAAAAACATGAACCGCACCACCGGCGTAGCCC 98137 33 97.0 35 ..........A...................... TGGAGGCCCTTACGGGATATGCCCCGGCACTGGAT 98205 33 93.9 35 ..........A.....................C TTTTCGGAGCTGCGGGGCGGCACCGGGCGCTTCAA 98273 32 78.8 0 .............T...AA.T....G.-....G | ========== ====== ====== ====== ================================= ====================================== ================== 36 33 99.1 34 GTCGCCCTCCGCACGGAGGGCGTGGATAGAAAT # Left flank : AAATGAAGCAAAAGAGGTGTGTGATATGCTGGTGCTGATCACCTACGATGTAAACACAGAAACACCGGCTGGACGCAAACGTCTGCGCAAGGTTGCAAAGACTTGTATCGATCATGGGCAGCGCGTGCAAAATTCAGTGTTTGAATGCCTGCTGGATGCGGCTCAATATGCGGTTTTGAAAGCAAAACTGACGCAGTTGATTGATCCGGAATGCGATAGCCTGCGCTTTTACTGTTTGGGAAACTCTTACAAGAAGAAGGTGGAGCATATCGGGCGCTGCCCGCAGTGGTCGCAGGACGATGTGTTGCTATTGTAGCGGGTGCGAACATAAAGTATACAGAAAAATACAGGGAGCTTCGCACCAAAAGATAGTTGAAAAATGATGTAAAAGAACGCGAAATAGTTTTGATAGAACCAGAGAGGAGATGCTTTGGAATATCAGAACGATGAATTTTCGTGTTTGTGCTGCAAAAGAAAACAATATTTTGTGAACTTTTGCT # Right flank : GTCTTATTTTGATAAGTTAGCCATGACTTGCAGTGCTGACCTTCTGTACGCAGTACGTATGTGGAGTTTGTGTGGTGGAGCCCCCACCTATGGAACAAGAAGGGAATAAGGCATCAATTTCATCCCACAAACTCAAAAATCCCGAATGCGAGAGCGTTCGGGATTTTTTTCGTATTCACTATTCATTTATTGCTCTTTATTGAGCGATACCGCCTATTCAGAATTTTGGAAGCGAGGAGAGAGTACAGCCTTGGTTTTCATGCGATGCCGTCGCAGTCAAGAATTCGAATCAGAATCTTCGTAATATAATTCTGGGGGTTTACCTCCACAAACTGATCGATGATATTGATGCAGATGACATCCTCGGCCAAGGGCAGTTCGGTGGAGGTGCGCATCCGGGTGAAGGTATCCCAGATCGTGGAGTAAGGCCCGGAGTGGTAACCGGTCAGATAGGTTCCGGCGGGAATCTTGTGTACCTCGTGCTGCGAGGCCTCGGGAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGCACGGAGGGCGTGGATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCTCCACACGGAGGGCGTGGATAGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //