Array 1 1560092-1559665 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB910517.1 Thermoanaerobacter indiensis BSB-33 B044DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1560091 30 100.0 37 .............................. TCGCCTGCTCCAAAAGTTGTTCCAATTACTGCAAAAA 1560024 30 100.0 36 .............................. TATCCTCCATGGCCGGGATCAATACATATTTTCATC 1559958 30 100.0 36 .............................. AAAGGACCGTGGTAGTCATTTGCTTTTTGTGGATAA 1559892 30 100.0 34 .............................. AGCATTTCTATATCTGAAAGATGTTTTTGAACAG 1559828 30 100.0 37 .............................. TCTTGCCGTTTGCGTCATATACATTGATACCATATTT 1559761 30 100.0 37 .............................. CTGAAACACTTCCCGAATTATTTCCTAAGGTTGAAGT 1559694 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : ATAGGTGCAGCTTTTAACAAAGTAGTAAATTCATTAGTTGTGGATGTTTTAACTCCACTGATTGGAGCAATATTTGGAGCTCCTGATTTTTCTGCCCTTAAATTAGGACCAATAGCCATAAGTAATTTCCTTAATGCTGTTGTTAACTTTATTATCGTATCTGCAGCCATTTATTTTTTCATAGTAGCTCCTATGAATGCTATTAGACTGCGAAAAGCAAAAGAAAAAGAACAAACACCACCTGAACCATCAGAGGAAGTAAAACTTTTAAGAGAAATATTAGAGGTATTAAAGGAAAAGTAAGGTAAGAATATTGATTAATATAAATTTGTCGTCGACCTAAGATAATGCAAAAAATGTTGAGGATCGACGACAAATTATTTTTTCAATTTTAGAAAATAGTTGATTTTGTCAAACAATATGGTATAATAAAGTTAAAATACTTGACAGATAAGATGAAAAAAGAAAAATTTGTTCTTTATTATATTTGATTATAATGG # Right flank : TTATTCCTCCATTGAATCTGCTATCAAGAATATCCATGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGTTAATAAAGTTAAATTAAAAGTTAAGACACTGCAGATTCGACCGTGACCTTAAGGCCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTTGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGACTTTTGTTTACCAGCACTTTCATTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2531781-2530417 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB910517.1 Thermoanaerobacter indiensis BSB-33 B044DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2531780 30 100.0 39 .............................. AGGAAATTGTCGTCGATTCATTCCAACTTACATCCATAC 2531711 30 100.0 37 .............................. AAGACAGCACAGGCAAACAATGGCGTTTTGCTATAGA 2531644 30 100.0 35 .............................. TTTAAAGAGGCAAGGGAAATTTTAGACAAGGCCGA 2531579 30 100.0 37 .............................. TTCAAACGCAAACCTAAAAATACAGTTTTGACGCTTA 2531512 30 100.0 36 .............................. CAATCATTGATGAAGAACTTGGTATAGACGTTAAGG 2531446 30 100.0 36 .............................. AGAAAGTCCAAGATCTCTGGTGCCAAGGTGTGGATA 2531380 30 100.0 37 .............................. ACAAGCCAATTACAAACACCTTATAGCCAAATAAGCA 2531313 30 100.0 36 .............................. TTATAAAGAGGGCCAGCTTTTAGTTTTTCCTCTTTT 2531247 30 100.0 37 .............................. CATGGCCTGCTGTAACCATCGTGTCCTGTCTGCTGTA 2531180 30 100.0 37 .............................. GAACACGCAGATGGTTTGCTATTTTACAATGAGCCAA 2531113 30 100.0 38 .............................. GGTTCAGCATGAAGTACATTTCTAACAAACAGTACCGG 2531045 30 100.0 37 .............................. ATATTTAGCCCACTCTTTATGCCATTCAAATATTCGT 2530978 30 100.0 37 .............................. GTAGACTACCTTTTAGGTAGAAGCGATATCCGAAATC 2530911 30 100.0 36 .............................. GCTTTAAGCTGCCGTACCTTCTCCCGGGCCCGCTCC 2530845 30 100.0 35 .............................. CCCATAGCTTGAGGTGAGTTAGATTCCAGTCAATT 2530780 30 100.0 36 .............................. GCGGAAAGGTCCCGGTTCTTTTGCTCCAGGGCGGCA 2530714 30 100.0 37 .............................. TAATACCGCTGACCAATAAGCATCCATTGTCGTTCTA 2530647 30 100.0 36 .............................. GGGTCATTCCAGAATGCTGCTTTTATCTGTCTGTTG 2530581 30 100.0 38 .............................. ACATGAAAGCTGGCCTTAAACCTGGTGACCGGGTGCTG 2530513 30 100.0 37 .............................. AGGTTAGAAGCGTTACCAATGTGCCGGTGGCCACGCA 2530446 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 21 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : TTCCATAGCAACAACAGAACAACCTTTAGCTTTAATAAATTCTTTTAATGCAATAAGGTCATCGGTCATAGTTGAAAAAGTGCGGATTTCTTTACCTTCTGGTGTTATTATACAAGCTACGACATTCTTTTTATGGACATCTAATCCGCAAACATGAGAATAAACTAAATCCATGAAAGAACCAACTCCTTTTTTAAAATTTGAACGATAGCGACTGTAAAATTGAAGAGCTGGTGCAACAACCATAAGGGGTTATTCTATCCTGCGTGCTTCCCGTAAAGGGAGCAACAATCTGTGGTGCACCTGGTCGTTGGAGTCTGTCTATGAGTCGGGCTCAAAGCACCAAGGTAAGAACGACCTTTCTTCACCAGCCGCTGTACTGATTATATCATCAAAAAAGGACATTTTCATCCTCTGCTGGTGCCGCATTTGCGGCATGGGAGTCTATAAGGAATTGAAACACAATATATTTCCTTGGGCTGGTATGCGTAGATGTAATG # Right flank : TATTGCCTTTGGCGTTGGGGGTGGAGCTGGGGTAACGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTGGTGATGATTGATCAAGCCTTTTAAAGCGCGTTTTAGTTCATCCATTTTATTTTTTAGCTTGCCTTGAGAAAGCTCAGCCAGGGTTTCGGGATTTTCTTCACCATTTATAATAGCCTCAAGTATAGAACGACTGGATGCCCCGTTGATATCAGAGACTACCGAAGACAGTTTGATATTAGCTCCTTCTAAAACCTTTTGTATGCGATTAAGTTCTCTTGATTTTTCTTCAATGAGACTTTTTCTATAGCGTACAAGCTCGCGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2533840-2533479 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB910517.1 Thermoanaerobacter indiensis BSB-33 B044DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2533839 30 100.0 38 .............................. CTGTTTCCACAGGTGATAAGCTTTCATCCATTGCTTAT 2533771 30 100.0 37 .............................. TTGAAAGTAATTTTTATGTTTTAAGAGAAACAAACAT 2533704 30 100.0 36 .............................. TAAATAAAACCTATAATACTTCCGAATATGAAATCT 2533638 30 100.0 35 .............................. TTAAAAACATTCCTAATTTTAATGCAGAAAAATTT 2533573 30 100.0 35 .............................. TTGCATTTATCCCTTTGGGTAAATGTATCCTTGAA 2533508 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : TGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGACTTTTGTTTACCAGCACTTTCATTATGACCTGGACACAACCCTGCCCAAGAACACAAATGGGCAGCAGAGGGGAACTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCTGTACTGATTATATCATCAAAAAAGGACATTTTCATCCTCTGCTGGTGCCGCATTTGCGGCATGGGAGTCTATAAGGAATTGAAACACTTCTCGTAGACGCTCAGCAACCTTTTTAGCACGT # Right flank : TAGAACCAGTATCAGCAATTTTTTTCATATTACTTGGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGTTAATAAAGTTAAATTAAAAGTTAAGACACTGCAGATTCGACCGTGACCTTAAGGCCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTTGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGACTTTTGTTTACCAGCACTTTCATTATGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.75%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 2536987-2534622 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB910517.1 Thermoanaerobacter indiensis BSB-33 B044DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2536986 30 100.0 37 .............................. TGTAAAGCCTGGGATAATCCAGTTTTGTGGCTAGCCG 2536919 30 100.0 38 .............................. CGATGTAGTTCTTGCAGATAAATGGTCGCTGAGGGAGA 2536851 30 100.0 36 .............................. GTTAATACGGCCGGCATGCTTGTCTTGCGAAGCACG 2536785 30 100.0 36 .............................. TGCCAAGGGACCCGTATAAGGAACTTGCTGGGCTTA 2536719 30 100.0 36 .............................. AACGCACTATCTTTGCCGTTCTTGGTGACATGCTCG 2536653 30 100.0 37 .............................. ATTGCAGATGAATATGGGCTTAAAAAACTTGAACAGA 2536586 30 100.0 36 .............................. TTAAGCCACGCTTTAATATCCTCTTCTTTGACACTA 2536520 30 100.0 37 .............................. TTAAGACGTATGTCTATCTCATTCGCACTTATATTCC 2536453 30 100.0 36 .............................. TAACACGCTTTTTGCGTGATGCTTTATATGAAAACG 2536387 30 100.0 36 .............................. TAGTATCACTTGTAACTATACTTTCTTTAAGAATTC 2536321 30 100.0 36 .............................. CTGGCAAATTTTTAGCTCTAGCAAACTCCTGCACCG 2536255 30 100.0 36 .............................. GATTAAAAGTTATAAAAGAAAACCCAATGAAATATT 2536189 30 100.0 38 .............................. CGCTTAAACCTGTTAGCATCGCTGTTTCCGTCACTTAA 2536121 30 100.0 37 .............................. AAATCGGGACTTTATTAAGTCCTTAAAAGCAAACATA 2536054 30 100.0 38 .............................. TATTAAGGAAGTACGGTAAAGGAAGGGAATAGCCATGC 2535986 30 100.0 37 .............................. ATGACACTGACGGCATCACTACTACCGACACGGCCAT 2535919 30 100.0 37 .............................. CGGTGAGTATGTGGATGCCCTGGTTGCCGACCGTGGG 2535852 30 100.0 36 .............................. GAAGAAAGCGATGAGGCACTGATTGCTCGCTATCTT 2535786 30 100.0 37 .............................. ACACTATTCGCGCCGGCGACAAGGTCCAACTCAACGG 2535719 30 100.0 38 .............................. AATTCAGACGTCCCAAGGCGAGGCCAATTTTGCTTCTA 2535651 30 100.0 35 .............................. CGGCCAGCGCGCGGCTCTCCGTGGTGGGCACTGGG 2535586 30 100.0 36 .............................. GCTTGACTACGCCGTAAAGGTGCTGGCAAACCTCCA 2535520 30 100.0 35 .............................. ATGTAATGCTTCCAATAAAGGTCTTTGCTGATATT 2535455 30 100.0 39 .............................. ATTGAGCCGATTGCATAAGCGCAGCTATAAAACTTATCG 2535386 30 100.0 38 .............................. ATAAACAGAGATTTGGATAATTGTAATAGTAGTTTAGC 2535318 30 100.0 38 .............................. TGGTTAAGTGTTGTTGATGATTTGATAAGGCATTATGA 2535250 30 100.0 37 .............................. TAATCACTTCGCCAACTGGGTTGTAGTATTTTTCTAC 2535183 30 100.0 35 .............................. TGGATTTTATACCGCTTATTACGTTTTGTACCAGG 2535118 30 100.0 35 .............................. ACTTTAACTTCTTGGATGCTGTTTCTTACATTCTT 2535053 30 100.0 37 .............................. AGTTCTGTTTCCTCTTTAATCACTTGACCAATTGCTT 2534986 30 100.0 37 .............................. AGAATTCAAAAATATAAAGAAGTTCTAAACTGGTACA 2534919 30 100.0 38 .............................. CTGTATAACTCTTCAACAGGTACATTCAAAACTTCTGC 2534851 30 100.0 37 .............................. ACGCATTTTGGCATATTCCCATGTGGCTGGGCATGAG 2534784 30 100.0 36 .............................. CCCAGCCCGAAGTTGCCTTGCTCGTCCCCACGCACC 2534718 30 100.0 37 .............................. AGGTCTTGCTGCGCTCGTTTGAACAGGACCTCCCCAT 2534651 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 36 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : ACTAGCCTGGGCAACGAGGGCACGGGCTACTTTAATGAGTTTTTAGCCTACCTATAAGGAATTGAAACCATGAATTTTGTGGCCGCTGCTCTGGCTGCTATCCAAGTTTTTAGCCTACCTATAAGGAATTGAAACTATTAAGGAAGTACGGTAAAGGAAGGGAATAGCCATGGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCAGCCGCTGTACTGATTATATCATCAAAAAAGGACATTTTCATCCTCTGCTGGTGCCGCATTTGCGGCATGGGAGTCTATAAGGAATTGAAACTATTCTTCGCTACCCTTGCCTGCCTTAAACGAGCGCCG # Right flank : TCCTCCTTTTTGCCGCCAAACAGTTTACCAATCTGCTGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGTTAATAAAGTTAAATTAAAAGTTAAGACACTGCAGATTCGACCGTGACCTTAAGGCCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTTGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGACTTTTGTTTACCAGCACTTTCATTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2539908-2537352 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB910517.1 Thermoanaerobacter indiensis BSB-33 B044DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2539907 30 100.0 37 .............................. TTAAGTGCCAATACAGGTAAGAATATGTTATCTGTCA 2539840 30 100.0 36 .............................. GTTTATCGCTTATTGAACAGTAGGTGGTGGTTGTAT 2539774 30 100.0 36 .............................. TTACCTCCCCAACAATTTTAATACCCGATCCAAAAG 2539708 30 100.0 37 .............................. CTAGAAGAGTACAAGCAACAAATGAATGGTTGGGCTT 2539641 30 100.0 36 .............................. AGAGATGTTTCGATTATAATTGATGTATTCGGTGGC 2539575 30 100.0 37 .............................. CAGAATGAAAAAGCTAAAGAATCGTTAGATAAACTTA 2539508 30 100.0 40 .............................. AGGTTTAGGGGTGTTTCTGTCACTAACAAGCGGACTTTTG 2539438 30 100.0 37 .............................. TTTAATACAAGATATTAATAATAAAGAAATTAACCTC 2539371 30 100.0 37 .............................. AGTTAAACAAGGCGCAAGCTGAACTTGCAAATATGGA 2539304 30 100.0 37 .............................. ACTTAATAGCTAAATCCTGCGTTGCCTTTGCGTCTGC 2539237 30 100.0 36 .............................. GGTGCATATTCAGATATACTGAACCCATCTTGGGTT 2539171 30 100.0 39 .............................. ATGTAAAAGTGACAGAACAAATCAATGGAGATTATGCCT 2539102 30 100.0 36 .............................. GAAGGATGCTAATGGGAATTGGATATGGCGGACGTT 2539036 30 100.0 39 .............................. AGCTCAAGTGTAATTTCGCCCAGCGACGATGCCGTCTCA 2538967 30 100.0 35 .............................. ATCCGATTTGTTTACTGATCCATACAAACCGCTCA 2538902 30 100.0 36 .............................. ACCCGAAGGCTGGGATTGGGCTTGGATATATTATCT 2538836 30 100.0 36 .............................. GCGAAGAAATTAGCCATAAATCAATTTGGCAACACC 2538770 30 100.0 36 .............................. TACCTTCTGCACCTCGCCCGTTGCCATGTCTGCCTC 2538704 30 100.0 36 .............................. CATTTTGGACACACATAAGCATTTATACCATCTATT 2538638 30 100.0 37 .............................. AATGGAAGCCGTATTCTTTTGCCCATCAATCCAGAAA 2538571 30 100.0 36 .............................. GATTTTGGATCTGGCTGCTGGTTTTCCCGCTCTCCC 2538505 30 100.0 37 .............................. TTGCTATACTCAGCAGGAATTGGAATAATGGCTCGAA 2538438 30 100.0 36 .............................. TCTTCTATTTGCCGTTCTAACATTCTATATAGTGCA 2538372 30 100.0 35 .............................. TTGTATTATTCACCCATGATAACAGACTTGTTTCA 2538307 30 100.0 38 .............................. ACAGCTATGTCACTCTTGACGAAGCAGAGCAATACTTT 2538239 30 100.0 35 .............................. TCTACATGCCGCTCCACGCTCAGCCTGGCAACCTG 2538174 30 100.0 35 .............................. CCAATAACGGTAAAGAAAAACGGGTCTGTTATTAC 2538109 30 100.0 35 .............................. TAGTCTCCCAGCAAGAATTCTTTTTTCAACGCCTC 2538044 30 100.0 37 .............................. CTTCGTCAAAGCGGTGTTTCGGGATAAAGTTTTTGAA 2537977 30 100.0 37 .............................. TTAGAAGAGTACAAGCAACAAATGAACGGCTGGGCTT 2537910 30 100.0 37 .............................. CTACATTTTGTTCTTGTAGTTTCGCCCTTGTGCTGTT 2537843 30 100.0 36 .............................. AGTGGTTCGTGTTTATCTTGCTCCCAGCTACGGAGT 2537777 30 100.0 36 .............................. GTTAATACGGCCGGCATGCTTGTCTTGCGAAGCACG 2537711 30 100.0 35 .............................. GAATGATGCGGGCAGACCGTCCCAGACGGTCCAGC 2537646 30 100.0 35 .............................. GTTAAAACATCGTGGTTGATTAAGCAATTCACAGG 2537581 30 100.0 37 .............................. CCAGTACGGGCAATTCCATTCCCCTGACGTTGTTCCA 2537514 30 100.0 36 .............................. TAGCCTGGGCAACGAGGGCACGGGCTACTTTAATGA 2537448 30 100.0 37 .............................. CATGAATTTTGTGGCCGCTGCTCTGGCTGCTATCCAA 2537381 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 39 30 100.0 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : AAATATGTGTATTTCCAAATTTGAATTAATTGAAGATGACTATTATAAAGTAGATGCATTTATTGAATTGAATGATGAAGCTAAAGAATTGTGGCATAAGTATGTTGAGCTTAAAGACATAAAAAATCTATTTGAAAGGAGAAATATTTTTAATCGATTTAAAGCTGACTTTTATAAATATGTAATATCAATACCTGCAACAGTGGAAAATATGCCTCCTGATATTTGGGGTTTTAAGTATGTAAATTATGATAGTTTAAATGATTATTATGACAAAGAAACAGGTTTTATAACAAAAGGAGTCACAAGTATATGGTAACAAATTTGTCGTCGATCCCAAATAAGGCAAAAACACCTGGGGATAGACGACATTTTTATTTTTCTGATTTTCATAAAGTAATTGATTTTATTGGACAATATGGTATAATAAAGTCAAGATACTTGACAGAAATTAAAAAATTGTAAGGTGTATAATGTGCTATTTATGCATGTTAGAATGA # Right flank : TATTAAGGAAGTACGGTAAAGGAAGGGAATAGCCATGGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCAGCCGCTGTACTGATTATATCATCAAAAAAGGACATTTTCATCCTCTGCTGGTGCCGCATTTGCGGCATGGGAGTCTATAAGGAATTGAAACTATTCTTCGCTACCCTTGCCTGCCTTAAACGAGCGCCGGTTTTTAGCCTACCTATAAGGAATTGAAACTGTAAAGCCTGGGATAATCCAGTTTTGTGGCTAGCCGGTTTTTAGCCTACCTATAAGGAATTGAAACCGATGTAGTTCTTGCAGATAAATGGTCGCTGAGGGAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //